| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12875 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 1.0 | CSW01_19595 | | DNA-binding response regulator | 0.43 | 20 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_03802 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.44 | OHPLBJKB_00677 | | Transcriptional regulatory protein QseB | low | > 74 |
| Escherichia coli ECRC62 | 0.71 | BNILDI_07315 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.44 | BNILDI_00855 | | Transcriptional regulatory protein QseB | low | > 75 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_15580 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.44 | JDDGAC_22515 | | Transcriptional regulatory protein QseB | low | > 87 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_16215 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.44 | KEDOAH_09265 | | Transcriptional regulatory protein QseB | — | — |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_11940 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.44 | OKFHMN_18880 | | Transcriptional regulatory protein QseB | low | > 79 |
| Escherichia fergusonii Becca | 0.71 | EFB2_04300 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.44 | EFB2_00788 | | Transcriptional regulatory protein QseB | 0.44 | 33 |
| Escherichia coli ECOR38 | 0.71 | HEPCGN_10140 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.44 | HEPCGN_17740 | | Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC | low | > 88 |
| Escherichia coli BL21 | 0.71 | ECD_04101 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | ECD_02897 | | quorum sensing DNA-binding response regulator in two-component regulatory system with QseC | low | > 61 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_02445 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.44 | MCAODC_09395 | | Transcriptional regulatory protein QseB | low | > 87 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_04200 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.44 | NOLOHH_10660 | | Transcriptional regulatory protein QseB | low | > 76 |
| Escherichia coli BW25113 | 0.71 | b4233 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | 0.45 | b3025 | qseB | DNA-binding response regulator in two-component regulatory system with QseC (NCBI) | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.71 | KDGMDA_11310 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.44 | KDGMDA_17065 | | two-component system response regulator PmrA | low | > 95 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_09790 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.44 | NIAGMN_16645 | | Transcriptional regulatory protein QseB | low | > 80 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS24560 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | ECOLIN_RS23805 | | two-component system response regulator BasR | low | > 55 |
| Serratia liquefaciens MT49 | 0.70 | IAI46_01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.43 | IAI46_01870 | | two-component system response regulator PmrA | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF881 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.45 | GFF1469 | | Transcriptional regulatory protein basR/pmrA | low | > 78 |
| Klebsiella michiganensis M5al | 0.70 | BWI76_RS02820 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | BWI76_RS08795 | | DNA-binding response regulator | low | > 92 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_00515 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.44 | MPMX20_03863 | | Transcriptional regulatory protein QseB | low | > 85 |
| Enterobacter asburiae PDN3 | 0.69 | EX28DRAFT_3420 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.45 | EX28DRAFT_3235 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 76 |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS18580 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | DDA3937_RS19350 | | two-component system response regulator PmrA | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS02615 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.42 | HER17_RS02000 | | two-component system response regulator PmrA | low | > 75 |
| Erwinia amylovora T8 | 0.69 | OLJFJH_02365 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.47 | OLJFJH_07175 | | two-component system response regulator PmrA | low | > 58 |
| Dickeya dianthicola 67-19 | 0.68 | HGI48_RS18515 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | HGI48_RS19450 | | two-component system response regulator PmrA | low | > 71 |
| Dickeya dianthicola ME23 | 0.68 | DZA65_RS19650 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | DZA65_RS20570 | | two-component system response regulator PmrA | low | > 75 |
| Erwinia tracheiphila HP pepo 2.2 | 0.67 | IJEDHG_06780 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.45 | IJEDHG_13855 | pmrA | two-component system response regulator PmrA | — | — |
| Erwinia tracheiphila SCR3 | 0.67 | LU632_RS02135 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | LU632_RS21175 | pmrA | two-component system response regulator PmrA | low | > 73 |
| Rahnella sp. WP5 | 0.67 | EX31_RS08665 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.48 | EX31_RS08605 | | two-component system response regulator PmrA | low | > 89 |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_00168 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.46 | MIT1002_00810 | | Transcriptional regulatory protein BasR | low | > 70 |
| Shewanella oneidensis MR-1 | 0.64 | SO3805 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) | 0.44 | SO2104 | | DNA-binding response regulator YgiX, putative (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_0791 | | UDP-N-acetylmuramate (RefSeq) | 0.44 | Shewana3_1885 | | two component transcriptional regulator (RefSeq) | low | > 73 |
| Pseudomonas sp. BP01 | 0.64 | JOY50_RS23075 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.49 | JOY50_RS03360 | | response regulator | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.63 | GEMAOFIL_05114 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.39 | GEMAOFIL_04104 | | Transcriptional regulatory protein QseB | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.63 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.53 | PFLU_RS15245 | | response regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.63 | PS417_24800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.54 | PS417_13595 | | XRE family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.63 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.53 | PFLU_RS15245 | | response regulator | low | > 109 |
| Pseudomonas orientalis W4I3 | 0.63 | QF045_RS27085 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.40 | QF045_RS09800 | | response regulator | low | > 93 |
| Pseudomonas putida KT2440 | 0.63 | PP_0547 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.49 | PP_2713 | | DNA-binding response regulator | low | > 96 |
| Pseudomonas segetis P6 | 0.63 | MPMX49_01032 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.51 | MPMX49_03735 | | Transcriptional regulatory protein QseB | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.63 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | Psyr_3511 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Pseudomonas aeruginosa PUPa3 | 0.63 | DQ20_RS48085 | mpl;go_function=acid-amino | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.46 | DQ20_RS52405 | pmrA;inference=COORDINATES | two-component system response regulator PrmA | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.63 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | Psyr_3511 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.63 | COO64_RS15685 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.54 | COO64_RS20755 | | response regulator | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.62 | IKLFDK_20730 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.46 | IKLFDK_29710 | | two-component system response regulator PrmA | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.62 | DY961_RS12755 | mpl;go_function=acid-amino | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.46 | DY961_RS09640 | pmrA;inference=COORDINATES | two-component system response regulator PrmA | low | > 100 |
| Pseudomonas sp. RS175 | 0.62 | PFR28_03883 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.53 | PFR28_02328 | | Transcriptional regulatory protein QseB | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_06550 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.43 | AO353_23010 | | XRE family transcriptional regulator | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_0673 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.50 | Psest_3476 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 67 |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_1344 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.53 | PfGW456L13_3169 | | Two-component system response regulator QseB | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.62 | Pf6N2E2_4982 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.52 | Pf6N2E2_1539 | | Two-component system response regulator QseB | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_15235 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.53 | AO356_23845 | | XRE family transcriptional regulator | low | > 104 |
| Pseudomonas sp. DMC3 | 0.62 | GFF3860 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.52 | GFF3603 | | Transcriptional regulatory protein QseB | low | > 89 |
| Pseudomonas sp. S08-1 | 0.62 | OH686_09400 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.54 | OH686_04665 | | Two-component system response regulator QseB | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2676 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.52 | Pf1N1B4_4454 | | Two-component system response regulator QseB | — | — |
| Methylophilus sp. DMC18 | 0.60 | GFF2071 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.40 | GFF2662 | | Transcriptional regulatory protein QseB | — | — |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS11275 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | RPSI07_RS07290 | | DNA-binding response regulator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS13915 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.46 | RS_RS24590 | | DNA-binding response regulator | low | > 80 |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS07655 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | UW163_RS17155 | | DNA-binding response regulator | — | — |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS01630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | ABZR87_RS22890 | | response regulator transcription factor | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS05970 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | RALBFv3_RS16415 | | DNA-binding response regulator | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS27145 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | QEN71_RS02475 | | response regulator | low | > 153 |
| Marinobacter adhaerens HP15 | 0.57 | HP15_616 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.41 | HP15_3968 | | two component transcriptional regulator, winged helix family | low | > 73 |
| Cupriavidus basilensis FW507-4G11 | 0.57 | RR42_RS17675 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | RR42_RS30345 | | XRE family transcriptional regulator | low | > 128 |
| Dechlorosoma suillum PS | 0.56 | Dsui_0384 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.47 | Dsui_3448 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | low | > 51 |
| Burkholderia phytofirmans PsJN | 0.56 | BPHYT_RS16990 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.47 | BPHYT_RS16220 | | transcriptional regulator | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_003563 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.47 | ABIE53_003418 | | two-component system response regulator QseB | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_06288 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.47 | H281DRAFT_04180 | | two component transcriptional regulator, winged helix family | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS01965 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.49 | HSERO_RS21985 | | transcriptional regulator | low | > 78 |
| Rhodanobacter sp000427505 FW510-R12 | 0.55 | LRK53_RS01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.42 | LRK53_RS00905 | | response regulator | low | > 59 |
| Variovorax sp. OAS795 | 0.51 | ABID97_RS06355 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.45 | ABID97_RS14955 | | response regulator | low | > 91 |
| Variovorax sp. SCN45 | 0.51 | GFF4445 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) | 0.45 | GFF1175 | | Two-component system response regulator QseB | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS10690 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.42 | ABCV34_RS11770 | | response regulator | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_4032 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.43 | Ac3H11_3946 | | Two-component system response regulator QseB | low | > 79 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.14 | CA265_RS10785 | | peptidoglycan synthetase | 0.35 | CA265_RS00370 | | DNA-binding response regulator | low | > 88 |
Not shown: 17 genomes with orthologs for CSW01_12875 only; 3 genomes with orthologs for CSW01_19595 only