Conservation of cofitness between CSW01_03410 and CSW01_13810 in Vibrio cholerae E7946 ATCC 55056

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03410 polyribonucleotide nucleotidyltransferase 1.0 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.84 4
Pantoea sp. MT58 0.78 IAI47_17005 polyribonucleotide nucleotidyltransferase 0.77 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) low > 76
Klebsiella michiganensis M5al 0.77 BWI76_RS25065 polyribonucleotide nucleotidyltransferase 0.79 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) low > 92
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS09100 polyribonucleotide nucleotidyltransferase 0.77 PagCFBP13505_RS18350 phosphoenolpyruvate carboxykinase (ATP) low > 74
Dickeya dadantii 3937 0.77 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase 0.81 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) low > 74
Klebsiella pneumoniae MKP103 0.77 KDGMDA_05875 polyribonucleotide nucleotidyltransferase 0.81 KDGMDA_06970 phosphoenolpyruvate carboxykinase (ATP) low > 95
Enterobacter asburiae PDN3 0.77 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase 0.79 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) — —
Dickeya dianthicola 67-19 0.77 HGI48_RS03260 polyribonucleotide nucleotidyltransferase 0.81 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS03255 polyribonucleotide nucleotidyltransferase 0.81 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase 0.81 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) low > 74
Enterobacter sp. TBS_079 0.77 MPMX20_04068 Polyribonucleotide nucleotidyltransferase 0.79 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli BW25113 0.77 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) 0.81 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) low > 76
Escherichia coli BL21 0.77 ECD_03031 polynucleotide phosphorylase/polyadenylase 0.81 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.81 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 78
Escherichia coli ECOR27 0.77 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase 0.81 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) low > 76
Escherichia coli ECRC100 0.77 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase 0.81 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) low > 79
Escherichia coli ECRC98 0.77 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase 0.81 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli ECRC102 0.77 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase 0.81 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC101 0.77 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase 0.81 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli ECRC62 0.77 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase 0.81 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) low > 75
Escherichia coli ECOR38 0.77 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase 0.81 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC99 0.77 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase 0.81 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli Nissle 1917 0.77 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase 0.81 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) low > 55
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_13960 pnp polyribonucleotide nucleotidyltransferase 0.78 IJEDHG_11970 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia fergusonii Becca 0.77 EFB2_00659 Polyribonucleotide nucleotidyltransferase 0.81 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Erwinia tracheiphila SCR3 0.77 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase 0.78 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Rahnella sp. WP5 0.76 EX31_RS08520 polyribonucleotide nucleotidyltransferase 0.79 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) low > 89
Erwinia amylovora T8 0.76 OLJFJH_07265 polyribonucleotide nucleotidyltransferase 0.78 OLJFJH_04150 phosphoenolpyruvate carboxykinase (ATP) low > 58
Pectobacterium carotovorum WPP14 0.76 HER17_RS18190 polyribonucleotide nucleotidyltransferase 0.80 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) — —
Serratia liquefaciens MT49 0.76 IAI46_01955 polyribonucleotide nucleotidyltransferase 0.81 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) low > 87
Shewanella loihica PV-4 0.74 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.37 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) — —
Shewanella amazonensis SB2B 0.73 Sama_0966 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.38 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) — —
Alteromonas macleodii MIT1002 0.73 MIT1002_01888 Polyribonucleotide nucleotidyltransferase 0.36 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] — —
Shewanella oneidensis MR-1 0.72 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.36 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) — —
Shewanella sp. ANA-3 0.72 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.36 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_0104 polyribonucleotide nucleotidyltransferase 0.76 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas aeruginosa PUPa3 0.63 DQ20_RS52590 pnp;go_function=polyribonucleotide polyribonucleotide nucleotidyltransferase 0.34 DQ20_RS50285 phosphoenolpyruvate carboxykinase — —
Pseudomonas aeruginosa MRSN321 0.63 DY961_RS09440 pnp;go_function=polyribonucleotide polyribonucleotide nucleotidyltransferase 0.34 DY961_RS11825 phosphoenolpyruvate carboxykinase — —
Pseudomonas aeruginosa PA14 0.63 IKLFDK_29900 polyribonucleotide nucleotidyltransferase 0.34 IKLFDK_27515 phosphoenolpyruvate carboxykinase low > 98
Marinobacter adhaerens HP15 0.62 HP15_3063 polynucleotide phosphorylase/polyadenylase 0.36 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas sp. S08-1 0.62 OH686_17165 polyribonucleotide nucleotidyltransferase 0.32 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) low > 80
Pseudomonas stutzeri RCH2 0.61 Psest_0986 polyribonucleotide nucleotidyltransferase 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas sp. SVBP6 0.61 COO64_RS15150 pnp polyribonucleotide nucleotidyltransferase 0.33 COO64_RS00660 phosphoenolpyruvate carboxykinase low > 93
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_07390 polyribonucleotide nucleotidyltransferase 0.32 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] low > 104
Pseudomonas sp. BP01 0.61 JOY50_RS26855 pnp polyribonucleotide nucleotidyltransferase 0.33 JOY50_RS18315 phosphoenolpyruvate carboxykinase — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_3349 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.32 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.29 92
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_1156 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.34 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) — —
Pseudomonas sp. RS175 0.61 PFR28_00094 Polyribonucleotide nucleotidyltransferase 0.34 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_5084 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.33 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) — —
Pseudomonas sp. DMC3 0.61 GFF4992 Polyribonucleotide nucleotidyltransferase 0.33 GFF4175 Phosphoenolpyruvate carboxykinase (ATP) low > 89
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_05540 polyribonucleotide nucleotidyltransferase 0.33 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] — —
Pseudomonas segetis P6 0.60 ACVTMO_RS05975 pnp polyribonucleotide nucleotidyltransferase 0.32 ACVTMO_RS03850 phosphoenolpyruvate carboxykinase — —
Pseudomonas simiae WCS417 0.59 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.34 PS417_01210 hypothetical protein low > 88
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_04941 Polyribonucleotide nucleotidyltransferase 0.35 GEMAOFIL_00469 Phosphoenolpyruvate carboxykinase (ATP) low > 96
Pseudomonas orientalis W4I3 0.59 QF045_RS26205 polyribonucleotide nucleotidyltransferase 0.35 QF045_RS04340 phosphoenolpyruvate carboxykinase — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Agrobacterium fabrum C58 0.55 Atu0082 polyribonucleotide nucleotidyltransferase 0.42 Atu0035 phosphoenolpyruvate carboxykinase — —
Rhizobium sp. OAE497 0.55 ABIE40_RS00355 polyribonucleotide nucleotidyltransferase 0.40 ABIE40_RS19415 phosphoenolpyruvate carboxykinase — —
Sinorhizobium meliloti 1021 0.55 SMc00324 polynucleotide phosphorylase/polyadenylase 0.41 SMc02562 phosphoenolpyruvate carboxykinase — —
Bosea sp. OAE506 0.54 ABIE41_RS04595 polyribonucleotide nucleotidyltransferase 0.40 ABIE41_RS02665 phosphoenolpyruvate carboxykinase — —
Xanthobacter sp. DMC5 0.54 GFF2302 Polyribonucleotide nucleotidyltransferase 0.40 GFF4136 Phosphoenolpyruvate carboxykinase (ATP) — —
Sphingomonas koreensis DSMZ 15582 0.54 Ga0059261_2140 polyribonucleotide nucleotidyltransferase 0.39 Ga0059261_0913 phosphoenolpyruvate carboxykinase (ATP) — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_2997 Polyribonucleotide nucleotidyltransferase (RefSeq) 0.39 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.53 TX73_002245 polyribonucleotide nucleotidyltransferase 0.42 TX73_001865 phosphoenolpyruvate carboxykinase — —
Sphingobium sp. HT1-2 0.53 GFF2343 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.40 GFF3825 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) — —
Phaeobacter inhibens DSM 17395 0.52 PGA1_c33000 polyribonucleotide nucleotidyltransferase Pnp 0.39 PGA1_c01140 phosphoenolpyruvate carboxykinase — —
Fusobacterium nucleatum SB010 0.45 HUW76_01280 polyribonucleotide nucleotidyltransferase 0.39 HUW76_06485 phosphoenolpyruvate carboxykinase (ATP) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_04880 polyribonucleotide nucleotidyltransferase 0.44 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) — —
Bacteroides thetaiotaomicron VPI-5482 0.40 BT2563 polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.73 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) — —
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS04155 polyribonucleotide nucleotidyltransferase 0.72 ABI39_RS06685 phosphoenolpyruvate carboxykinase (ATP) — —
Bacteroides ovatus ATCC 8483 0.40 BACOVA_01641 polyribonucleotide nucleotidyltransferase 0.72 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) — —
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS12555 polyribonucleotide nucleotidyltransferase 0.72 HMPREF1058_RS10065 phosphoenolpyruvate carboxykinase (ATP) — —
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS00815 polyribonucleotide nucleotidyltransferase 0.72 HMPREF1181_RS01170 phosphoenolpyruvate carboxykinase (ATP) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_3436 polyribonucleotide nucleotidyltransferase 0.42 Echvi_2957 phosphoenolpyruvate carboxykinase (ATP) — —
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS08985 polyribonucleotide nucleotidyltransferase 0.41 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) — —
Parabacteroides merdae CL09T00C40 0.38 HMPREF1078_RS17715 polyribonucleotide nucleotidyltransferase 0.72 HMPREF1078_RS07235 phosphoenolpyruvate carboxykinase (ATP) — —
Cellulophaga baltica 18 0.36 M666_RS08550 polyribonucleotide nucleotidyltransferase 0.43 M666_RS03005 phosphoenolpyruvate carboxykinase (ATP) low > 67

Not shown: 41 genomes with orthologs for CSW01_03410 only; 0 genomes with orthologs for CSW01_13810 only