Conservation of cofitness between CSW01_13280 and CSW01_13735 in Vibrio cholerae E7946 ATCC 55056

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13280 phosphoglycolate phosphatase 1.0 CSW01_13735 3'(2'),5'-bisphosphate nucleotidase CysQ 0.45 15
Klebsiella michiganensis M5al 0.42 BWI76_RS26065 phosphoglycolate phosphatase 0.30 BWI76_RS02735 3'(2'),5'-bisphosphate nucleotidase CysQ low > 92
Shewanella oneidensis MR-1 0.42 SO0293 gph phosphoglycolate phosphatase (NCBI ptt file) 0.55 SO0191 cysQ-1 cysQ protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.42 Shewana3_3887 phosphoglycolate phosphatase (RefSeq) 0.55 Shewana3_0170 3'(2'),5'-bisphosphate nucleotidase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.42 Sama_3361 phosphoglycolate phosphatase (RefSeq) 0.52 Sama_0184 cysQ protein (RefSeq) low > 62
Enterobacter asburiae PDN3 0.41 EX28DRAFT_4157 2-phosphoglycolate phosphatase, prokaryotic 0.31 EX28DRAFT_3401 3'(2'),5'-bisphosphate nucleotidase, bacterial low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF634 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.32 GFF868 '3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)' transl_table=11 low > 78
Pseudomonas stutzeri RCH2 0.41 Psest_3651 2-phosphoglycolate phosphatase, prokaryotic 0.33 Psest_3960 3'(2'),5'-bisphosphate nucleotidase, bacterial low > 67
Shewanella loihica PV-4 0.40 Shew_0220 phosphoglycolate phosphatase (RefSeq) 0.52 Shew_0130 3'(2'),5'-bisphosphate nucleotidase (RefSeq) low > 60
Serratia liquefaciens MT49 0.40 IAI46_23680 phosphoglycolate phosphatase 0.30 IAI46_01745 3'(2'),5'-bisphosphate nucleotidase CysQ low > 87
Klebsiella pneumoniae MKP103 0.40 KDGMDA_06890 phosphoglycolate phosphatase 0.30 KDGMDA_11220 3'(2') 5'-bisphosphate nucleotidase CysQ low > 95
Enterobacter sp. TBS_079 0.40 MPMX20_04274 Phosphoglycolate phosphatase 0.31 MPMX20_00492 3'(2'),5'-bisphosphate nucleotidase CysQ low > 85
Pectobacterium carotovorum WPP14 0.40 HER17_RS01800 phosphoglycolate phosphatase 0.30 HER17_RS03955 3'(2'),5'-bisphosphate nucleotidase CysQ low > 75
Pantoea sp. MT58 0.40 IAI47_01915 phosphoglycolate phosphatase 0.33 IAI47_02695 3'(2'),5'-bisphosphate nucleotidase CysQ low > 76
Pantoea agglomerans CFBP13505 P0401 0.40 PagCFBP13505_RS21680 phosphoglycolate phosphatase 0.33 PagCFBP13505_RS11290 3'(2'),5'-bisphosphate nucleotidase CysQ low > 74
Dickeya dianthicola 67-19 0.40 HGI48_RS19655 phosphoglycolate phosphatase 0.30 HGI48_RS17235 3'(2'),5'-bisphosphate nucleotidase CysQ low > 71
Dickeya dadantii 3937 0.40 DDA3937_RS19525 phosphoglycolate phosphatase 0.30 DDA3937_RS17180 3'(2'),5'-bisphosphate nucleotidase CysQ low > 74
Escherichia coli BW25113 0.40 b3385 gph phosphoglycolate phosphatase (NCBI) 0.31 b4214 cysQ PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) 0.38 56
Escherichia coli BL21 0.40 ECD_03237 phosphoglycolate phosphatase 0.31 ECD_04086 3'(2'),5'-bisphosphate nucleotidase 0.38 39
Escherichia coli ECRC98 0.39 JDDGAC_20765 gph phosphoglycolate phosphatase 0.31 JDDGAC_15675 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 87
Escherichia coli ECRC62 0.39 BNILDI_02595 gph phosphoglycolate phosphatase 0.31 BNILDI_07225 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 75
Escherichia coli ECRC101 0.39 MCAODC_07665 gph phosphoglycolate phosphatase 0.31 MCAODC_02550 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 87
Escherichia coli ECRC99 0.39 KEDOAH_11005 gph phosphoglycolate phosphatase 0.31 KEDOAH_16120 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ
Dickeya dianthicola ME23 0.39 DZA65_RS20740 phosphoglycolate phosphatase 0.31 DZA65_RS18320 3'(2'),5'-bisphosphate nucleotidase CysQ low > 75
Escherichia coli ECRC100 0.39 OKFHMN_17135 gph phosphoglycolate phosphatase 0.31 OKFHMN_12035 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 79
Escherichia coli ECOR38 0.39 HEPCGN_15955 gph phosphoglycolate phosphatase 0.31 HEPCGN_10230 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 88
Escherichia coli ECRC102 0.39 NIAGMN_14905 gph phosphoglycolate phosphatase 0.31 NIAGMN_09885 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 80
Escherichia coli ECOR27 0.39 NOLOHH_08925 gph phosphoglycolate phosphatase 0.31 NOLOHH_04295 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00318 Phosphoglycolate phosphatase 0.31 OHPLBJKB_03819 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 low > 74
Escherichia coli Nissle 1917 0.39 ECOLIN_RS19340 phosphoglycolate phosphatase 0.31 ECOLIN_RS24480 3'(2'),5'-bisphosphate nucleotidase CysQ low > 55
Escherichia fergusonii Becca 0.39 EFB2_00443 Phosphoglycolate phosphatase 0.31 EFB2_04314 3'(2'),5'-bisphosphate nucleotidase CysQ low > 86
Erwinia tracheiphila SCR3 0.39 LU632_RS22845 phosphoglycolate phosphatase 0.32 LU632_RS02085 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 73
Erwinia tracheiphila HP pepo 2.2 0.39 IJEDHG_12055 gph phosphoglycolate phosphatase 0.32 IJEDHG_06835 cysQ 3'(2') 5'-bisphosphate nucleotidase CysQ 0.74 5
Pseudomonas segetis P6 0.37 MPMX49_00888 Phosphoglycolate phosphatase 0.36 MPMX49_04384 3'(2'),5'-bisphosphate nucleotidase CysQ
Rahnella sp. WP5 0.37 EX31_RS04700 phosphoglycolate phosphatase 0.30 EX31_RS08720 3'(2'),5'-bisphosphate nucleotidase CysQ low > 89
Alteromonas macleodii MIT1002 0.36 MIT1002_02231 Phosphoglycolate phosphatase 0.48 MIT1002_03993 3'(2'),5'-bisphosphate nucleotidase CysQ low > 70
Erwinia amylovora T8 0.34 OLJFJH_04070 phosphoglycolate phosphatase 0.32 OLJFJH_02410 3'(2') 5'-bisphosphate nucleotidase CysQ low > 58
Acinetobacter baumannii LAC-4 0.32 RR41_RS17615 phosphoglycolate phosphatase 0.26 RR41_RS12260 3'(2'),5'-bisphosphate nucleotidase CysQ low > 55
Marinobacter adhaerens HP15 0.29 HP15_3287 phosphoglycolate phosphatase 0.33 HP15_2405 3'(2'), 5'-bisphosphate nucleotidase
Acinetobacter radioresistens SK82 0.28 MPMX26_00198 Phosphoglycolate phosphatase 0.24 MPMX26_01312 3'(2'),5'-bisphosphate nucleotidase CysQ
Agrobacterium fabrum C58 0.27 Atu1614 phosphoglycolate phosphatase 0.23 Atu2428 exopolysaccharide production protein PssB low > 89
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.4534.1 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.35 Xcc-8004.1562.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) low > 74
Rhizobium sp. OAE497 0.25 ABIE40_RS10530 HAD family hydrolase 0.22 ABIE40_RS14720 3'(2'),5'-bisphosphate nucleotidase CysQ low > 107
Azospirillum brasilense Sp245 0.25 AZOBR_RS09685 phosphoglycolate phosphatase 0.27 AZOBR_RS09435 3'-5'-bisphosphate nucleotidase low > 97
Azospirillum sp. SherDot2 0.25 MPMX19_04508 Phosphoglycolate phosphatase 0.30 MPMX19_01084 3'(2'),5'-bisphosphate nucleotidase CysQ low > 112
Sphingobium sp. HT1-2 0.24 GFF2443 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.14 GFF4917 '3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)' transl_table=11 low > 95
Bosea sp. OAE506 0.24 ABIE41_RS20995 phosphoglycolate phosphatase 0.17 ABIE41_RS23120 3'(2'),5'-bisphosphate nucleotidase CysQ low > 77
Rhodospirillum rubrum S1H 0.24 Rru_A3031 2-phosphoglycolate phosphatase (NCBI) 0.23 Rru_A0445 3(2),5 -bisphosphate nucleotidase (NCBI)
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS14395 HAD family hydrolase 0.25 HMPREF1058_RS02960 3'(2'),5'-bisphosphate nucleotidase CysQ low > 67
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS10015 HAD family hydrolase 0.26 ABI39_RS02275 3'(2'),5'-bisphosphate nucleotidase CysQ low > 72
Lysobacter sp. OAE881 0.23 ABIE51_RS13485 phosphoglycolate phosphatase 0.35 ABIE51_RS05275 3'(2'),5'-bisphosphate nucleotidase CysQ low > 62
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS08825 HAD family hydrolase 0.25 HMPREF1181_RS04320 3'(2'),5'-bisphosphate nucleotidase CysQ low > 56
Sinorhizobium meliloti 1021 0.23 SMc00151 phosphoglycolate phosphatase 0.25 SMc01952 transmembrane protein low > 103
Dinoroseobacter shibae DFL-12 0.22 Dshi_2760 phosphoglycolate phosphatase (RefSeq) 0.24 Dshi_3574 3'(2'),5'-bisphosphate nucleotidase (RefSeq)
Rhodopseudomonas palustris CGA009 0.22 TX73_010205 HAD-IA family hydrolase 0.20 TX73_008350 3'(2'),5'-bisphosphate nucleotidase CysQ low > 86
Bacteroides thetaiotaomicron VPI-5482 0.22 BT4184 phosphoglycolate phosphatase (NCBI ptt file) 0.27 BT0411 CysQ, sulfite synthesis pathway protein (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.21 BACOVA_05034 HAD hydrolase, family IA, variant 1 0.24 BACOVA_01765 hypothetical protein low > 96
Dyella japonica UNC79MFTsu3.2 0.20 ABZR86_RS08775 HAD-IA family hydrolase 0.31 ABZR86_RS10205 3'(2'),5'-bisphosphate nucleotidase CysQ low > 74
Sphingomonas koreensis DSMZ 15582 0.20 Ga0059261_3662 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 0.16 Ga0059261_0811 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family low > 68
Caulobacter crescentus NA1000 Δfur 0.20 CCNA_02390 phosphoglycolate phosphatase 0.23 CCNA_03582 3'(2'),5'-bisphosphate nucleotidase CysQ
Caulobacter crescentus NA1000 0.20 CCNA_02390 phosphoglycolate phosphatase 0.23 CCNA_03582 3'(2'),5'-bisphosphate nucleotidase CysQ
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_09515 gph phosphoglycolate phosphatase 0.38 OKGIIK_10995 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ low > 53
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS02460 phosphoglycolate phosphatase 0.35 LRK54_RS04130 3'(2'),5'-bisphosphate nucleotidase CysQ low > 59
Rhodanobacter denitrificans MT42 0.19 LRK55_RS02215 phosphoglycolate phosphatase 0.35 LRK55_RS03900 3'(2'),5'-bisphosphate nucleotidase CysQ low > 63
Rhodanobacter sp000427505 FW510-R12 0.19 LRK53_RS07485 phosphoglycolate phosphatase 0.35 LRK53_RS05795 3'(2'),5'-bisphosphate nucleotidase CysQ low > 59
Kangiella aquimarina DSM 16071 0.18 B158DRAFT_1769 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 0.36 B158DRAFT_2344 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) 0.45 33
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS13105 HAD hydrolase-like protein 0.25 HMPREF1078_RS01685 3'(2'),5'-bisphosphate nucleotidase CysQ low > 61
Phaeobacter inhibens DSM 17395 0.17 PGA1_c10250 phosphoglycolate phosphatase-like protein 0.25 PGA1_c34500 3'(2'),5'-bisphosphate nucleotidase CysQ
Synechocystis sp000284455 PCC 6803 0.16 SGL_RS06975 HAD-IA family hydrolase 0.17 SGL_RS16880 3'(2'),5'-bisphosphate nucleotidase CysQ

Not shown: 22 genomes with orthologs for CSW01_13280 only; 28 genomes with orthologs for CSW01_13735 only