Conservation of cofitness between CSW01_02445 and CSW01_10775 in Vibrio cholerae E7946 ATCC 55056

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02445 hypothetical protein 1.0 CSW01_10775 AI-2E family transporter 0.49 2
Rahnella sp. WP5 0.62 EX31_RS02695 YggT family protein 0.60 EX31_RS22725 AI-2E family transporter low > 89
Serratia liquefaciens MT49 0.58 IAI46_21420 YggT family protein 0.59 IAI46_18795 AI-2E family transporter low > 86
Alteromonas macleodii MIT1002 0.56 MIT1002_03063 YGGT family protein 0.55 MIT1002_02210 pheromone autoinducer 2 transporter low > 70
Shewanella loihica PV-4 0.55 Shew_1135 protein of unknown function YGGT (RefSeq) 0.51 Shew_1843 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.55 SO3355 conserved hypothetical protein (NCBI ptt file) 0.49 SO2867 permease PerM, putative (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.54 Sama_2479 protein of unknown function YGGT (RefSeq) 0.51 Sama_1911 hypothetical protein (RefSeq) — —
Klebsiella michiganensis M5al 0.54 BWI76_RS24105 resistance protein 0.58 BWI76_RS20920 AI-2E family transporter low > 92
Escherichia coli ECOR27 0.52 NOLOHH_11120 yggT osmotic shock tolerance protein YggT 0.58 NOLOHH_13490 perM Putative permease PerM low > 75
Escherichia fergusonii Becca 0.52 EFB2_00950 hypothetical protein 0.57 EFB2_01405 Putative transport protein YhhT low > 86
Escherichia coli BL21 0.52 ECD_02782 putative inner membrane protein; compensates for loss in K+ uptake 0.58 ECD_02385 putative UPF0118 family inner membrane permease — —
Escherichia coli ECRC98 0.52 JDDGAC_22880 yggT osmotic shock tolerance protein YggT 0.58 JDDGAC_25785 perM Putative permease PerM low > 86
Escherichia coli Nissle 1917 0.52 ECOLIN_RS16420 osmotic shock tolerance protein YggT 0.57 ECOLIN_RS14160 AI-2E family transporter — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00764 hypothetical protein 0.58 OHPLBJKB_01233 Putative transport protein YhhT low > 73
Escherichia coli ECRC99 0.52 KEDOAH_08890 yggT osmotic shock tolerance protein YggT 0.58 KEDOAH_06380 perM Putative permease PerM — —
Escherichia coli ECOR38 0.52 HEPCGN_18555 yggT osmotic shock tolerance protein YggT 0.58 HEPCGN_21005 perM Putative permease PerM low > 87
Escherichia coli ECRC100 0.52 OKFHMN_19250 yggT osmotic shock tolerance protein YggT 0.58 OKFHMN_21840 perM Putative permease PerM low > 80
Escherichia coli ECRC102 0.52 NIAGMN_17015 yggT osmotic shock tolerance protein YggT 0.58 NIAGMN_19610 perM Putative permease PerM — —
Escherichia coli ECRC62 0.52 BNILDI_09700 yggT osmotic shock tolerance protein YggT 0.58 BNILDI_12300 perM Putative permease PerM low > 75
Escherichia coli ECRC101 0.52 MCAODC_09770 yggT osmotic shock tolerance protein YggT 0.58 MCAODC_12370 perM Putative permease PerM low > 87
Escherichia coli BW25113 0.52 b2952 yggT predicted inner membrane protein (NCBI) 0.58 b2493 yfgO predicted inner membrane protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3055 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.57 GFF2176 Putative permease PerM (= YfgO) low > 78
Shewanella sp. ANA-3 0.51 Shewana3_1192 protein of unknown function YGGT (RefSeq) 0.49 Shewana3_1651 hypothetical protein (RefSeq) low > 73
Enterobacter sp. TBS_079 0.50 MPMX20_03810 hypothetical protein 0.58 MPMX20_03343 Putative transport protein YhhT low > 85
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2990 Predicted integral membrane protein 0.59 EX28DRAFT_0179 Predicted permease low > 76
Pseudomonas stutzeri RCH2 0.37 Psest_0282 Predicted integral membrane protein 0.48 Psest_1512 Predicted permease — —
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_08170 hypothetical protein 0.38 AO353_17655 permease low > 101
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2340 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.44 Pf1N1B4_3329 Putative permease PerM (= YfgO) — —
Pseudomonas sp. S08-1 0.35 OH686_10985 YggT-like protein 0.14 OH686_19010 Putative permease often clustered with de novo purine synthesis low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0475 Protein of unknown function YGGT 0.45 Psyr_1545 Protein of unknown function UPF0118 low > 86
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0475 Protein of unknown function YGGT 0.45 Psyr_1545 Protein of unknown function UPF0118 low > 86
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04033 YggT family protein 0.17 H281DRAFT_04709 Predicted PurR-regulated permease PerM low > 103
Pseudomonas putida KT2440 0.33 PP_5096 putative factor involved in shape determination 0.42 PP_1234 putative permease low > 96
Paraburkholderia graminis OAS925 0.33 ABIE53_003258 YggT family protein 0.16 ABIE53_000873 putative PurR-regulated permease PerM low > 113
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS03230 YggT family protein 0.18 QEN71_RS26450 AI-2E family transporter low > 153
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS36110 membrane protein 0.10 RR42_RS28465 permease low > 128
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_13415 hypothetical protein 0.44 AO356_04545 permease low > 104
Pseudomonas simiae WCS417 0.32 PS417_26735 membrane protein 0.43 PS417_07150 permase — —
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4599 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.45 Pf6N2E2_2750 Putative permease PerM (= YfgO) 0.23 97
Pseudomonas sp. RS175 0.31 PFR28_04244 hypothetical protein 0.43 PFR28_00696 hypothetical protein 0.27 56
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS28380 YggT family protein 0.42 PFLU_RS07260 AI-2E family transporter low > 109
Marinobacter adhaerens HP15 0.31 HP15_286 protein of unknown function YGGT 0.43 HP15_2029 permease perM low > 73
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_1009 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.42 PfGW456L13_4510 Putative permease PerM (= YfgO) low > 87
Pseudomonas fluorescens SBW25 0.31 PFLU_RS28380 YggT family protein 0.42 PFLU_RS07260 AI-2E family transporter low > 109
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS15440 membrane protein 0.16 BPHYT_RS03635 ABC transporter permease — —
Ralstonia solanacearum GMI1000 0.30 RS_RS23805 YggT family protein 0.15 RS_RS13150 AI-2E family transporter low > 80
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS18295 YggT family protein 0.15 ABZR87_RS00920 AI-2E family transporter low > 80
Acidovorax sp. GW101-3H11 0.28 Ac3H11_1537 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.11 Ac3H11_3555 FIG00931248: hypothetical protein low > 79
Ralstonia solanacearum PSI07 0.26 RPSI07_RS06140 YggT family protein 0.16 RPSI07_RS12015 AI-2E family transporter low > 81
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_0198 Predicted integral membrane protein 0.53 B158DRAFT_2441 Predicted permease low > 40
Variovorax sp. SCN45 0.23 GFF3880 Cell division integral membrane protein, YggT and half-length relatives 0.11 GFF3827 UPF0118 membrane protein SMc00793 low > 127
Dechlorosoma suillum PS 0.22 Dsui_0601 putative integral membrane protein 0.14 Dsui_1518 putative permease — —
Ralstonia solanacearum UW163 0.22 UW163_RS21640 YggT family protein 0.16 UW163_RS08340 AI-2E family transporter — —
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS17510 YggT family protein 0.16 RALBFv3_RS05285 AI-2E family transporter low > 76
Rhodanobacter sp. FW510-T8 0.20 OKGIIK_11140 YGGT family 0.16 OKGIIK_02325 AI-2E family transporter low > 52
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS01900 hypothetical protein 0.13 HSERO_RS03160 ABC transporter permease — —
Acinetobacter radioresistens SK82 0.19 MPMX26_00573 hypothetical protein 0.15 MPMX26_02205 hypothetical protein low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.18 GFF4919 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.13 GFF3435 Putative permease often clustered with de novo purine synthesis — —
Dyella japonica UNC79MFTsu3.2 0.17 ABZR86_RS10430 YggT family protein 0.15 ABZR86_RS19880 AI-2E family transporter low > 74
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS04265 YggT family protein 0.15 LRK54_RS12955 AI-2E family transporter low > 59
Rhodanobacter denitrificans MT42 0.14 LRK55_RS04035 YggT family protein 0.15 LRK55_RS12655 AI-2E family transporter low > 63

Not shown: 8 genomes with orthologs for CSW01_02445 only; 23 genomes with orthologs for CSW01_10775 only