Conservation of cofitness between CSW01_01045 and CSW01_09560 in Vibrio cholerae E7946 ATCC 55056

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01045 DNA helicase RecQ 1.0 CSW01_09560 orotidine-5'-phosphate decarboxylase 0.64 13
Klebsiella pneumoniae MKP103 0.67 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.68 KDGMDA_19655 orotidine-5'-phosphate decarboxylase low > 95
Escherichia coli ECRC100 0.67 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.68 OKFHMN_02550 pyrF orotidine-5'-phosphate decarboxylase low > 79
Escherichia coli ECRC62 0.67 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.68 BNILDI_18365 pyrF orotidine-5'-phosphate decarboxylase low > 75
Escherichia coli ECRC102 0.67 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.68 NIAGMN_26720 pyrF orotidine-5'-phosphate decarboxylase low > 80
Escherichia coli ECRC99 0.67 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.68 KEDOAH_26215 pyrF orotidine-5'-phosphate decarboxylase — —
Escherichia coli ECRC98 0.67 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.68 JDDGAC_05095 pyrF orotidine-5'-phosphate decarboxylase low > 87
Escherichia coli ECRC101 0.67 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.68 MCAODC_15715 pyrF orotidine-5'-phosphate decarboxylase low > 87
Escherichia coli ECOR38 0.67 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.68 HEPCGN_25650 pyrF orotidine-5'-phosphate decarboxylase low > 88
Escherichia coli ECOR27 0.67 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.68 NOLOHH_20215 pyrF orotidine-5'-phosphate decarboxylase low > 76
Pantoea sp. MT58 0.67 IAI47_18360 ATP-dependent DNA helicase RecQ 0.63 IAI47_09275 orotidine-5'-phosphate decarboxylase low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.64 ECOLIN_RS07730 orotidine-5'-phosphate decarboxylase — —
Escherichia fergusonii Becca 0.67 EFB2_04815 ATP-dependent DNA helicase RecQ 0.68 EFB2_02644 Orotidine 5'-phosphate decarboxylase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.68 OHPLBJKB_02401 'Orotidine 5'-phosphate decarboxylase' transl_table=11 low > 74
Escherichia coli BW25113 0.67 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.69 b1281 pyrF orotidine 5'-phosphate decarboxylase (NCBI) low > 76
Escherichia coli BL21 0.66 ECD_03701 ATP-dependent DNA helicase 0.68 ECD_01258 orotidine-5'-phosphate decarboxylase low > 61
Klebsiella michiganensis M5al 0.66 BWI76_RS01245 DNA helicase RecQ 0.69 BWI76_RS11965 orotidine-5'-phosphate decarboxylase low > 92
Dickeya dianthicola 67-19 0.66 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.64 HGI48_RS12580 orotidine-5'-phosphate decarboxylase low > 71
Erwinia tracheiphila SCR3 0.66 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.62 LU632_RS12500 pyrF orotidine-5'-phosphate decarboxylase low > 73
Serratia liquefaciens MT49 0.66 IAI46_00770 ATP-dependent DNA helicase RecQ 0.67 IAI46_13915 orotidine-5'-phosphate decarboxylase low > 87
Pantoea agglomerans CFBP13505 P0401 0.66 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.64 PagCFBP13505_RS06900 orotidine-5'-phosphate decarboxylase low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.63 DZA65_RS13030 orotidine-5'-phosphate decarboxylase low > 75
Erwinia amylovora T8 0.66 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.63 OLJFJH_13570 orotidine-5'-phosphate decarboxylase low > 58
Dickeya dadantii 3937 0.66 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.64 DDA3937_RS12525 orotidine-5'-phosphate decarboxylase low > 74
Erwinia tracheiphila HP pepo 2.2 0.66 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ 0.62 IJEDHG_23775 pyrF orotidine-5'-phosphate decarboxylase low > 61
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.67 EX28DRAFT_0954 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) — —
Enterobacter sp. TBS_079 0.66 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.68 MPMX20_02494 Orotidine 5'-phosphate decarboxylase low > 85
Rahnella sp. WP5 0.65 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.64 EX31_RS09855 orotidine-5'-phosphate decarboxylase low > 89
Pectobacterium carotovorum WPP14 0.65 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.65 HER17_RS09390 orotidine-5'-phosphate decarboxylase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF248 ATP-dependent DNA helicase RecQ 0.63 GFF2704 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 low > 78
Shewanella sp. ANA-3 0.59 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.64 Shewana3_1981 orotidine 5'-phosphate decarboxylase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.64 SO2398 pyrF orotidine 5`-phosphate decarboxylase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.58 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.66 Shew_1958 orotidine 5'-phosphate decarboxylase (RefSeq) — —
Shewanella amazonensis SB2B 0.57 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.65 Sama_1740 orotidine 5'-phosphate decarboxylase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.54 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.62 MIT1002_02184 Orotidine 5'-phosphate decarboxylase low > 70
Xanthobacter sp. DMC5 0.47 GFF753 ATP-dependent DNA helicase RecQ 0.29 GFF2226 Orotidine 5'-phosphate decarboxylase — —
Pseudomonas sp. SVBP6 0.46 COO64_RS21845 recQ DNA helicase RecQ 0.55 COO64_RS06575 pyrF orotidine-5'-phosphate decarboxylase low > 93
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS00140 recQ;go_function=DNA DNA helicase RecQ 0.58 DY961_RS02610 pyrF;go_function=orotidine-5'-phosphate orotidine-5'-phosphate decarboxylase 0.53 87
Pseudomonas aeruginosa PA14 0.45 IKLFDK_17145 DNA helicase RecQ 0.58 IKLFDK_14615 orotidine-5'-phosphate decarboxylase — —
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS40870 recQ;go_function=DNA DNA helicase RecQ 0.58 DQ20_RS32985 pyrF;go_function=orotidine-5'-phosphate orotidine-5'-phosphate decarboxylase — —
Marinobacter adhaerens HP15 0.45 HP15_1718 ATP-dependent DNA helicase RecQ 0.65 HP15_1370 orotidine 5'-phosphate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.57 PfGW456L13_2056 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) — —
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.57 PFR28_03064 'Orotidine 5'-phosphate decarboxylase' transl_table=11 — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.56 AO356_19850 orotidine 5'-phosphate decarboxylase — —
Pseudomonas segetis P6 0.45 MPMX49_02936 ATP-dependent DNA helicase RecQ 0.62 MPMX49_01902 Orotidine 5'-phosphate decarboxylase — —
Pseudomonas sp. S08-1 0.45 OH686_20670 ATP-dependent DNA helicase RecQ 0.55 OH686_00580 Orotidine 5'-phosphate decarboxylase low > 80
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.56 Pf6N2E2_5887 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.55 Pf1N1B4_514 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.56 Psyr_1836 orotidine-5'-phosphate decarboxylase — —
Pseudomonas sp. DMC3 0.44 GFF2380 ATP-dependent DNA helicase RecQ 0.55 GFF4798 Orotidine 5'-phosphate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.56 Psyr_1836 orotidine-5'-phosphate decarboxylase — —
Pseudomonas sp. BP01 0.44 JOY50_RS01155 recQ DNA helicase RecQ 0.56 JOY50_RS15880 pyrF orotidine-5'-phosphate decarboxylase — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.58 AO353_01670 orotidine 5'-phosphate decarboxylase — —
Pseudomonas putida KT2440 0.44 PP_4516 ATP-dependent DNA 3 0.54 PP_1815 Orotidine 5'-phosphate decarboxylase — —
Pseudomonas simiae WCS417 0.44 PS417_19950 ATP-dependent DNA helicase RecQ 0.56 PS417_09055 orotidine 5'-phosphate decarboxylase — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS21920 DNA helicase RecQ 0.58 PFLU_RS09110 orotidine-5'-phosphate decarboxylase — —
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ 0.56 GEMAOFIL_01940 'Orotidine 5'-phosphate decarboxylase' transl_table=11 — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS21920 DNA helicase RecQ 0.58 PFLU_RS09110 orotidine-5'-phosphate decarboxylase — —
Pseudomonas orientalis W4I3 0.44 QF045_RS22070 DNA helicase RecQ 0.56 QF045_RS11745 orotidine-5'-phosphate decarboxylase — —
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.57 Psest_1714 orotidine 5'-phosphate decarboxylase, subfamily 1 — —
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.33 ABIE40_RS01345 orotidine-5'-phosphate decarboxylase — —
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.33 Atu0298 orotidine 5 low > 89
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.27 Xcc-8004.5259.1 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) — —
Methylophilus sp. DMC18 0.43 GFF2139 ATP-dependent DNA helicase RecQ 0.59 GFF737 Orotidine 5'-phosphate decarboxylase — —
Magnetospirillum magneticum AMB-1 0.43 AMB_RS21505 DNA helicase RecQ 0.35 AMB_RS20255 orotidine-5'-phosphate decarboxylase — —
Dinoroseobacter shibae DFL-12 0.43 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.21 Dshi_0615 orotidine 5'-phosphate decarboxylase (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.25 PGA1_c32450 orotidine 5'-phosphate decarboxylase PyrF low > 62
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.37 AZOBR_RS03135 orotidine 5'-phosphate decarboxylase low > 97
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.34 SMc00412 orotidine 5'-phosphate decarboxylase low > 103
Rhodopseudomonas palustris CGA009 0.41 TX73_025080 DNA helicase RecQ 0.32 TX73_001750 orotidine-5'-phosphate decarboxylase — —
Bosea sp. OAE506 0.41 ABIE41_RS04160 DNA helicase RecQ 0.30 ABIE41_RS00050 orotidine-5'-phosphate decarboxylase low > 77
Azospirillum sp. SherDot2 0.41 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.33 MPMX19_02208 Orotidine 5'-phosphate decarboxylase — —
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.40 Rru_A3424 Orotidine-5'-phosphate decarboxylase (NCBI) low > 58
Sphingobium sp. HT1-2 0.38 GFF798 ATP-dependent DNA helicase RecQ 0.35 GFF2243 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 — —
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS14575 DNA helicase RecQ 0.24 A4249_RS14665 orotidine-5'-phosphate decarboxylase — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.35 Ga0059261_0234 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) — —
Caulobacter crescentus NA1000 0.35 CCNA_03578 ATP-dependent DNA helicase recQ 0.26 CCNA_00104 orotidine 5'-phosphate decarboxylase low > 66
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_03578 ATP-dependent DNA helicase recQ 0.26 CCNA_00104 orotidine 5'-phosphate decarboxylase low > 67
Fusobacterium nucleatum SB010 0.35 HUW76_07235 DNA helicase RecQ 0.34 HUW76_08730 orotidine-5'-phosphate decarboxylase low > 35

Not shown: 35 genomes with orthologs for CSW01_01045 only; 7 genomes with orthologs for CSW01_09560 only