Conservation of cofitness between CSW01_02015 and CSW01_04845 in Vibrio cholerae E7946 ATCC 55056

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02015 assimilatory sulfite reductase (NADPH) hemoprotein subunit 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.61 20
Alteromonas macleodii MIT1002 0.79 MIT1002_03379 Sulfite reductase [NADPH] hemoprotein beta-component 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Shewanella amazonensis SB2B 0.75 Sama_2838 sulfite reductase subunit beta (RefSeq) 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Serratia liquefaciens MT49 0.75 IAI46_03690 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Pantoea sp. MT58 0.75 IAI47_04155 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA low > 76
Pantoea agglomerans CFBP13505 P0401 0.75 PagCFBP13505_RS16810 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Rahnella sp. WP5 0.75 EX31_RS07900 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Pectobacterium carotovorum WPP14 0.74 HER17_RS04240 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Dickeya dadantii 3937 0.74 DDA3937_RS16940 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Dickeya dianthicola ME23 0.74 DZA65_RS18085 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Klebsiella pneumoniae MKP103 0.74 KDGMDA_03295 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA low > 95
Enterobacter sp. TBS_079 0.74 MPMX20_03642 Sulfite reductase [NADPH] hemoprotein beta-component 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA low > 85
Erwinia tracheiphila HP pepo 2.2 0.74 IJEDHG_17425 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC low > 61
Dickeya dianthicola 67-19 0.74 HGI48_RS17010 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA low > 71
Erwinia tracheiphila SCR3 0.73 LU632_RS06405 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 74
Enterobacter asburiae PDN3 0.73 EX28DRAFT_2852 sulfite reductase (NADPH) hemoprotein, beta-component 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF4819 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Klebsiella michiganensis M5al 0.73 BWI76_RS22760 sulfite reductase subunit beta 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00970 Sulfite reductase [NADPH] hemoprotein beta-component 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Escherichia coli Nissle 1917 0.73 ECOLIN_RS15405 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC99 0.72 KEDOAH_07750 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC98 0.72 JDDGAC_24040 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 87
Escherichia coli ECRC102 0.72 NIAGMN_18145 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 80
Escherichia coli ECOR27 0.72 NOLOHH_12190 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 76
Escherichia coli ECRC100 0.72 OKFHMN_20375 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 79
Escherichia coli ECRC101 0.72 MCAODC_10900 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 88
Escherichia coli ECRC62 0.72 BNILDI_10740 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Escherichia fergusonii Becca 0.72 EFB2_01154 Sulfite reductase [NADPH] hemoprotein beta-component 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli BW25113 0.72 b2763 cysI sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI) 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) low > 76
Escherichia coli ECOR38 0.72 HEPCGN_19090 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 88
Escherichia coli BL21 0.72 ECD_02608 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) low > 61
Erwinia amylovora T8 0.72 OLJFJH_09305 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA low > 58
Shewanella sp. ANA-3 0.59 Shewana3_0856 sulfite reductase subunit beta (RefSeq) 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO3737 cysI sulfite reductase (NADPH) hemoprotein beta-component (cysI) (NCBI ptt file) 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Shewanella loihica PV-4 0.58 Shew_0666 sulfite reductase subunit beta (RefSeq) 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) low > 60
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS09185 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase — —
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS05900 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_2161 sulfite reductase (NADPH) beta subunit (EC 1.8.1.2) 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Lysobacter sp. OAE881 0.48 ABIE51_RS15830 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_05965 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.1257.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS00925 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Castellaniella sp019104865 MT123 0.44 ABCV34_RS00215 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Herbaspirillum seropedicae SmR1 0.09 HSERO_RS15550 sulfite reductase 0.35 HSERO_RS21530 cytochrome C550 low > 78
Sphingobium sp. HT1-2 0.09 GFF1452 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Rhodospirillum rubrum S1H 0.09 Rru_A1931 Ferredoxin--nitrite reductase (NCBI) 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Rhodopseudomonas palustris CGA009 0.08 TX73_019220 NirA family protein 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86
Dinoroseobacter shibae DFL-12 0.08 Dshi_1153 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein (RefSeq) 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Ralstonia solanacearum UW163 0.08 UW163_RS09070 sulfite reductase 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum IBSBF1503 0.08 RALBFv3_RS04600 sulfite reductase 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Ralstonia sp. UNC404CL21Col 0.08 ABZR87_RS00210 nitrite/sulfite reductase 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Azospirillum sp. SherDot2 0.08 MPMX19_00652 Sulfite reductase [ferredoxin] 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Ralstonia solanacearum PSI07 0.08 RPSI07_RS12775 nitrite/sulfite reductase 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Ralstonia solanacearum GMI1000 0.08 RS_RS12170 nitrite/sulfite reductase 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase low > 80
Sphingomonas koreensis DSMZ 15582 0.08 Ga0059261_1498 Sulfite reductase, beta subunit (hemoprotein) 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Phaeobacter inhibens DSM 17395 0.07 PGA1_c20760 putative nitrite/sulfite reductase 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Sinorhizobium meliloti 1021 0.07 SMc02124 nitrite reductase 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Agrobacterium fabrum C58 0.07 Atu1456 sulfite reductase (NADPH) hemoprotein beta-component 0.21 Atu1499 penicillin binding protein low > 89
Pseudomonas sp. SVBP6 0.07 COO64_RS13825 nitrite/sulfite reductase 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein low > 93
Pseudomonas sp. BP01 0.07 JOY50_RS02185 DUF2849 domain-containing protein 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein low > 84
Paraburkholderia graminis OAS925 0.06 ABIE53_001226 sulfite reductase (NADPH) hemoprotein beta-component 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.06 H281DRAFT_00114 sulfite reductase (NADPH) beta subunit 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Pseudomonas aeruginosa PA14 0.06 IKLFDK_21270 sulfite reductase 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase low > 100
Acinetobacter baumannii LAC-4 0.06 RR41_RS03245 nitrite/sulfite reductase 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 low > 55

Not shown: 5 genomes with orthologs for CSW01_02015 only; 32 genomes with orthologs for CSW01_04845 only