Conservation of cofitness between CSW01_01475 and CSW01_03090 in Vibrio cholerae E7946 ATCC 55056

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01475 gluconate kinase 1.0 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.43 13
Pectobacterium carotovorum WPP14 0.59 HER17_RS01455 gluconokinase 0.65 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Dickeya dadantii 3937 0.58 DDA3937_RS19780 gluconokinase 0.64 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Rahnella sp. WP5 0.58 EX31_RS05055 gluconokinase 0.61 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 89
Dickeya dianthicola ME23 0.57 DZA65_RS20965 gluconokinase 0.63 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS19895 gluconokinase 0.64 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECOR38 0.51 HEPCGN_09940 idnK gluconokinase 0.64 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 88
Escherichia coli BL21 0.51 ECD_04134 D-gluconate kinase, thermosensitive 0.64 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent low > 61
Escherichia coli BW25113 0.51 b4268 idnK D-gluconate kinase, thermosensitive (NCBI) 0.64 b3146 yraL predicted methyltransferase (NCBI) low > 76
Escherichia fergusonii Becca 0.51 EFB2_04267 Thermoresistant gluconokinase 0.64 EFB2_00677 Ribosomal RNA small subunit methyltransferase I low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03768 Thermoresistant gluconokinase 0.64 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I low > 74
Escherichia coli ECOR27 0.50 NOLOHH_04015 idnK gluconokinase 0.63 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Enterobacter sp. TBS_079 0.50 MPMX20_04318 Thermoresistant gluconokinase 0.61 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I low > 85
Erwinia tracheiphila SCR3 0.50 LU632_RS19165 gntK gluconokinase 0.64 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF956 Gluconokinase (EC 2.7.1.12) 0.61 GFF1521 rRNA small subunit methyltransferase I low > 78
Erwinia tracheiphila HP pepo 2.2 0.50 IJEDHG_08035 gntK gluconokinase 0.63 IJEDHG_06680 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 61
Escherichia coli ECRC100 0.49 OKFHMN_16840 gntK gluconokinase 0.64 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.56 68
Escherichia coli ECRC102 0.49 NIAGMN_14610 gntK gluconokinase 0.64 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Klebsiella michiganensis M5al 0.49 BWI76_RS26240 gluconokinase 0.60 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase — —
Escherichia coli ECRC99 0.49 KEDOAH_11300 gntK gluconokinase 0.64 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS19670 gluconokinase 0.64 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 55
Enterobacter asburiae PDN3 0.49 EX28DRAFT_4273 carbohydrate kinase, thermoresistant glucokinase family 0.61 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Escherichia coli ECRC62 0.49 BNILDI_02865 gntK gluconokinase 0.63 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Escherichia coli ECRC98 0.49 JDDGAC_20470 gntK gluconokinase 0.64 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Escherichia coli ECRC101 0.49 MCAODC_07370 gntK gluconokinase 0.64 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Klebsiella pneumoniae MKP103 0.48 KDGMDA_07115 gluconokinase 0.58 KDGMDA_05780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 95
Erwinia amylovora T8 0.48 OLJFJH_04275 gluconokinase 0.65 OLJFJH_02280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 58
Pantoea agglomerans CFBP13505 P0401 0.47 PagCFBP13505_RS18160 gluconokinase 0.63 PagCFBP13505_RS11450 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Pantoea sp. MT58 0.46 IAI47_01655 gluconokinase 0.61 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Serratia liquefaciens MT49 0.45 IAI46_23955 gluconokinase 0.59 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3337 gluconate kinase, SKI family 0.53 Psyr_4112 Protein of unknown function UPF0011 low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3337 gluconate kinase, SKI family 0.53 Psyr_4112 Protein of unknown function UPF0011 low > 86
Rhizobium sp. OAE497 0.44 ABIE40_RS03370 gluconokinase 0.38 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 107
Rhodopseudomonas palustris CGA009 0.43 TX73_018855 gluconokinase 0.36 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Pseudomonas lactucae CFBP13502 0.42 GEMAOFIL_04535 Gluconokinase 0.53 GEMAOFIL_01121 Ribosomal RNA small subunit methyltransferase I low > 96
Bosea sp. OAE506 0.42 ABIE41_RS18085 gluconokinase 0.35 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 77
Pseudomonas fluorescens SBW25 0.42 PFLU_RS23590 gluconokinase 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas orientalis W4I3 0.42 QF045_RS24090 gluconokinase 0.53 QF045_RS07580 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 93
Pseudomonas simiae WCS417 0.42 PS417_21985 gluconokinase 0.53 PS417_04590 methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS23590 gluconokinase 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas sp. DMC3 0.42 GFF5267 Gluconokinase 0.54 GFF4428 Ribosomal RNA small subunit methyltransferase I — —
Agrobacterium fabrum C58 0.42 Atu0195 gluconokinase 0.37 Atu0302 tetrapyrrole methylase family protein low > 89
Sinorhizobium meliloti 1021 0.41 SM_b21119 gluconokinase 0.39 SMc00416 hypothetical protein low > 103
Acinetobacter baumannii LAC-4 0.41 RR41_RS16515 gluconokinase 0.44 RR41_RS09275 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 55
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_557 Gluconokinase (EC 2.7.1.12) 0.52 Pf1N1B4_953 rRNA small subunit methyltransferase I — —
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_05060 gluconokinase 0.53 AO356_17110 methyltransferase low > 104
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1926 Gluconokinase (EC 2.7.1.12) 0.51 PfGW456L13_1643 rRNA small subunit methyltransferase I — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS11145 gluconokinase 0.49 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Pseudomonas putida KT2440 0.40 PP_3416 D-gluconate kinase 0.52 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase — —
Paraburkholderia graminis OAS925 0.40 ABIE53_003514 gluconokinase 0.38 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS26905 gluconokinase 0.42 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 153
Pseudomonas sp. SVBP6 0.40 COO64_RS25585 gluconokinase 0.54 COO64_RS11845 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 93
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_2864 Gluconokinase (EC 2.7.1.12) 0.53 Pf6N2E2_5346 rRNA small subunit methyltransferase I low > 103
Pseudomonas sp. BP01 0.39 JOY50_RS23610 gluconokinase 0.52 JOY50_RS15165 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 84
Variovorax sp. SCN45 0.39 GFF1884 Gluconokinase (EC 2.7.1.12) 0.33 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) low > 127
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS16720 Gluconokinase (EC 2.7.1.12) (from data) 0.40 BPHYT_RS01940 16S rRNA methyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_04275 gluconate kinase, SKI family 0.39 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.25 82
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_03250 gluconokinase 0.53 AO353_15290 methyltransferase low > 101
Pseudomonas sp. RS175 0.39 PFR28_00594 Gluconokinase 0.53 PFR28_03597 Ribosomal RNA small subunit methyltransferase I low > 88
Ralstonia solanacearum GMI1000 0.38 RS_RS02185 gluconate kinase 0.33 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS07320 gluconokinase 0.33 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Ralstonia solanacearum PSI07 0.38 RPSI07_RS21850 gluconate kinase 0.33 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 81
Ralstonia solanacearum UW163 0.38 UW163_RS02230 gluconate kinase 0.34 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS11355 gluconate kinase 0.34 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Azospirillum brasilense Sp245 0.37 AZOBR_RS15715 gluconokinase 0.34 AZOBR_RS02155 16S rRNA methyltransferase — —
Pseudomonas aeruginosa PA14 0.37 IKLFDK_11380 gluconokinase 0.50 IKLFDK_01980 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Pseudomonas aeruginosa MRSN321 0.37 DY961_RS17995 gluconokinase GntK/IdnK-type 0.50 DY961_RS24365 rsmI;go_function=rRNA 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Pseudomonas aeruginosa PUPa3 0.37 DQ20_RS59235 gluconokinase GntK/IdnK-type 0.50 DQ20_RS56825 rsmI;go_function=rRNA 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Sphingobium sp. HT1-2 0.35 GFF2809 Gluconokinase (EC 2.7.1.12) 0.36 GFF309 '16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)' transl_table=11 low > 95
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF5508 Gluconokinase (EC 2.7.1.12) 0.32 GFF2715 rRNA small subunit methyltransferase I 0.60 8
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.5185.1 Gluconokinase (EC 2.7.1.12) 0.47 Xcc-8004.4371.1 rRNA small subunit methyltransferase I low > 74
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS06130 Gluconokinase (EC 2.7.1.12) (from data) 0.37 RR42_RS19740 16S rRNA methyltransferase low > 128
Variovorax sp. OAS795 0.33 ABID97_RS10185 gluconokinase 0.33 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3229 Gluconokinase (EC 2.7.1.12) 0.34 Ac3H11_4466 rRNA small subunit methyltransferase I — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS12280 gluconokinase 0.38 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 48
Lysobacter sp. OAE881 0.28 ABIE51_RS10215 gluconokinase, GntK/IdnK-type 0.44 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 62
Alteromonas macleodii MIT1002 0.26 MIT1002_03474 Thermoresistant gluconokinase 0.49 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I low > 70

Not shown: 2 genomes with orthologs for CSW01_01475 only; 29 genomes with orthologs for CSW01_03090 only