Conservation of cofitness between CSW01_04845 and CSW01_02015 in Vibrio cholerae E7946 ATCC 55056

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 1.0 CSW01_02015 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.61 18
Shewanella sp. ANA-3 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.59 Shewana3_0856 sulfite reductase subunit beta (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.58 SO3737 cysI sulfite reductase (NADPH) hemoprotein beta-component (cysI) (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.75 Sama_2838 sulfite reductase subunit beta (RefSeq) — —
Shewanella loihica PV-4 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.58 Shew_0666 sulfite reductase subunit beta (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.79 MIT1002_03379 Sulfite reductase [NADPH] hemoprotein beta-component — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA 0.74 HER17_RS04240 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA 0.74 HGI48_RS17010 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 71
Rahnella sp. WP5 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.75 EX31_RS07900 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 89
Pantoea sp. MT58 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA 0.75 IAI47_04155 assimilatory sulfite reductase (NADPH) hemoprotein subunit 0.35 40
Dickeya dadantii 3937 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.74 DDA3937_RS16940 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 74
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA 0.75 PagCFBP13505_RS16810 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 74
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC 0.74 IJEDHG_17425 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 61
Dickeya dianthicola ME23 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA 0.74 DZA65_RS18085 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 75
Erwinia tracheiphila SCR3 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.73 LU632_RS06405 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 74
Serratia liquefaciens MT49 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.75 IAI46_03690 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 86
Klebsiella pneumoniae MKP103 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.74 KDGMDA_03295 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 95
Erwinia amylovora T8 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA 0.72 OLJFJH_09305 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 58
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA 0.73 OHPLBJKB_00970 Sulfite reductase [NADPH] hemoprotein beta-component low > 74
Klebsiella michiganensis M5al 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.73 BWI76_RS22760 sulfite reductase subunit beta low > 92
Escherichia coli ECRC98 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.72 JDDGAC_24040 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 87
Enterobacter sp. TBS_079 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA 0.74 MPMX20_03642 Sulfite reductase [NADPH] hemoprotein beta-component low > 85
Escherichia coli ECRC102 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.72 NIAGMN_18145 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 80
Escherichia coli ECRC62 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.72 BNILDI_10740 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 75
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA 0.73 ECOLIN_RS15405 assimilatory sulfite reductase (NADPH) hemoprotein subunit — —
Escherichia coli ECOR38 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.72 HEPCGN_19090 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 88
Escherichia coli ECRC99 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.72 KEDOAH_07750 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit — —
Escherichia coli ECRC100 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.72 OKFHMN_20375 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 79
Escherichia coli BW25113 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) 0.72 b2763 cysI sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI) low > 76
Escherichia coli ECRC101 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.72 MCAODC_10900 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 88
Escherichia coli BL21 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) 0.72 ECD_02608 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding low > 61
Escherichia coli ECOR27 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.72 NOLOHH_12190 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.73 GFF4819 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) low > 78
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase 0.73 EX28DRAFT_2852 sulfite reductase (NADPH) hemoprotein, beta-component low > 76
Escherichia fergusonii Becca 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA 0.72 EFB2_01154 Sulfite reductase [NADPH] hemoprotein beta-component low > 86
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase 0.48 B158DRAFT_2161 sulfite reductase (NADPH) beta subunit (EC 1.8.1.2) — —
Pseudomonas sp. SVBP6 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein 0.07 COO64_RS13825 nitrite/sulfite reductase low > 93
Pseudomonas sp. BP01 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein 0.07 JOY50_RS02185 DUF2849 domain-containing protein low > 84
Pseudomonas aeruginosa PA14 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase 0.06 IKLFDK_21270 sulfite reductase low > 100
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.47 Xcc-8004.1257.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) low > 74
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.47 OKGIIK_05965 cysI assimilatory sulfite reductase (NADPH) hemoprotein subunit — —
Rhodanobacter sp000427505 FW510-R12 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase 0.49 LRK53_RS09185 assimilatory sulfite reductase (NADPH) hemoprotein subunit — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.46 LRK54_RS00925 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 59
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.48 ABZR86_RS05900 assimilatory sulfite reductase (NADPH) hemoprotein subunit — —
Lysobacter sp. OAE881 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.48 ABIE51_RS15830 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 62
Acinetobacter baumannii LAC-4 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 0.06 RR41_RS03245 nitrite/sulfite reductase low > 55
Rhodospirillum rubrum S1H 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) 0.09 Rru_A1931 Ferredoxin--nitrite reductase (NCBI) — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.08 RPSI07_RS12775 nitrite/sulfite reductase low > 81
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.06 H281DRAFT_00114 sulfite reductase (NADPH) beta subunit low > 103
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.08 ABZR87_RS00210 nitrite/sulfite reductase low > 80
Paraburkholderia graminis OAS925 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.06 ABIE53_001226 sulfite reductase (NADPH) hemoprotein beta-component low > 113
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21530 cytochrome C550 0.09 HSERO_RS15550 sulfite reductase low > 78
Ralstonia solanacearum GMI1000 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.08 RS_RS12170 nitrite/sulfite reductase low > 80
Azospirillum sp. SherDot2 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.08 MPMX19_00652 Sulfite reductase [ferredoxin] — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.44 ABCV34_RS00215 assimilatory sulfite reductase (NADPH) hemoprotein subunit low > 48
Ralstonia solanacearum UW163 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.08 UW163_RS09070 sulfite reductase — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.08 RALBFv3_RS04600 sulfite reductase low > 76
Sphingobium sp. HT1-2 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.09 GFF1452 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.08 Ga0059261_1498 Sulfite reductase, beta subunit (hemoprotein) — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.07 PGA1_c20760 putative nitrite/sulfite reductase — —
Rhodopseudomonas palustris CGA009 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase 0.08 TX73_019220 NirA family protein low > 86
Dinoroseobacter shibae DFL-12 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.08 Dshi_1153 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein (RefSeq) — —
Sinorhizobium meliloti 1021 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.07 SMc02124 nitrite reductase — —
Agrobacterium fabrum C58 0.21 Atu1499 penicillin binding protein 0.07 Atu1456 sulfite reductase (NADPH) hemoprotein beta-component low > 89

Not shown: 32 genomes with orthologs for CSW01_04845 only; 5 genomes with orthologs for CSW01_02015 only