| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Caulobacter crescentus NA1000 | 1.0 | CCNA_01324 | | LSU ribosomal protein L30P | 1.0 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.62 | 14 |
| Caulobacter crescentus NA1000 Δfur | 1.00 | CCNA_01324 | | LSU ribosomal protein L30P | 1.00 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | low | > 67 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.79 | A4249_RS04000 | | 50S ribosomal protein L30 | 0.55 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.75 | Ga0059261_3747 | | ribosomal protein L30, bacterial/organelle | 0.44 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | — | — |
| Phaeobacter inhibens DSM 17395 | 0.66 | PGA1_c01780 | | 50S ribosomal protein L30 | 0.52 | PGA1_c33360 | | putative alanine racemase | — | — |
| Sinorhizobium meliloti 1021 | 0.64 | SMc01291 | | 50S ribosomal protein L30 | 0.57 | SMc02812 | | hypothetical protein | — | — |
| Rhizobium sp. OAE497 | 0.63 | ABIE40_RS07945 | | 50S ribosomal protein L30 | 0.60 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Bosea sp. OAE506 | 0.63 | ABIE41_RS14640 | | 50S ribosomal protein L30 | 0.54 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS11380 | | 50S ribosomal protein L30 | 0.52 | AZOBR_RS01870 | | alanine racemase | — | — |
| Agrobacterium fabrum C58 | 0.62 | Atu8065 | | 50S ribosomal protein L30 | 0.54 | Atu2747 | | hypothetical protein | — | — |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_016715 | | 50S ribosomal protein L30 | 0.52 | TX73_001485 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Dinoroseobacter shibae DFL-12 | 0.60 | Dshi_0303 | | ribosomal protein L30 (RefSeq) | 0.53 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | — | — |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_00410 | | 50S ribosomal protein L30 | 0.51 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | — | — |
| Rhodospirillum rubrum S1H | 0.58 | Rru_A2670 | | Ribosomal protein L30 (NCBI) | 0.47 | Rru_A3634 | | Protein of unknown function UPF0001 (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.51 | AMB_RS15680 | | 50S ribosomal protein L30 | 0.55 | AMB_RS00120 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_0217 | rpmD | 50S ribosomal protein L30 (RefSeq) | 0.29 | Shewana3_1194 | | hypothetical protein (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_03593 | | 50S ribosomal protein L30 | 0.32 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | — | — |
| Shewanella amazonensis SB2B | 0.46 | Sama_0231 | | 50S ribosomal protein L30 (RefSeq) | 0.29 | Sama_2477 | | hypothetical protein (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.46 | SO0249 | rpmD | ribosomal protein L30 (NCBI ptt file) | 0.29 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS00660 | | 50S ribosomal protein L30 | 0.32 | HSERO_RS02515 | | enzyme with a TIM-barrel fold protein | — | — |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_806 | | LSU ribosomal protein L30p (L7e) | 0.26 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Variovorax sp. SCN45 | 0.44 | GFF5563 | | LSU ribosomal protein L30p (L7e) | 0.26 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | — | — |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS10145 | | 50S ribosomal protein L30 | 0.52 | RPSI07_RS02580 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.44 | Echvi_0237 | | ribosomal protein L30, bacterial/organelle | 0.22 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | — | — |
| Dechlorosoma suillum PS | 0.44 | Dsui_0341 | | ribosomal protein L30, bacterial/organelle | 0.29 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS07100 | | 50S ribosomal protein L30 | 0.52 | RALBFv3_RS20285 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS02750 | | 50S ribosomal protein L30 | 0.29 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS06520 | | 50S ribosomal protein L30 | 0.52 | UW163_RS18890 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_02703 | | 50S ribosomal protein L30 | 0.24 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF2824 | | LSU ribosomal protein L30p (L7e) | 0.29 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Shewanella loihica PV-4 | 0.43 | Shew_0176 | | ribosomal protein L30 (RefSeq) | 0.35 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.43 | RR42_RS19165 | | 50S ribosomal protein L30 | 0.30 | RR42_RS17355 | | hypothetical protein | — | — |
| Pantoea sp. MT58 | 0.43 | IAI47_02210 | | 50S ribosomal protein L30 | 0.28 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.43 | QEN71_RS28175 | | 50S ribosomal protein L30 | 0.30 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Variovorax sp. OAS795 | 0.42 | ABID97_RS01505 | | 50S ribosomal protein L30 | 0.27 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_003768 | | large subunit ribosomal protein L30 | 0.30 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | — | — |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS15035 | | 50S ribosomal protein L30 | 0.52 | RS_RS20395 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS18025 | | 50S ribosomal protein L30 | 0.30 | BPHYT_RS03495 | | hypothetical protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.42 | H281DRAFT_05586 | | LSU ribosomal protein L30P | 0.30 | H281DRAFT_04680 | | hypothetical protein | — | — |
| Marinobacter adhaerens HP15 | 0.42 | HP15_398 | | ribosomal protein L30, bacterial-type | 0.28 | HP15_288 | | alanine racemase domain protein | — | — |
| Rahnella sp. WP5 | 0.42 | EX31_RS16050 | | 50S ribosomal protein L30 | 0.32 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS19295 | | 50S ribosomal protein L30 | 0.31 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Pectobacterium carotovorum WPP14 | 0.42 | HER17_RS02155 | | 50S ribosomal protein L30 | 0.30 | HER17_RS01985 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS19195 | | 50S ribosomal protein L30 | 0.32 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS20415 | | 50S ribosomal protein L30 | 0.39 | DZA65_RS03335 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.41 | OHPLBJKB_00401 | | 50S ribosomal protein L30 | 0.33 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC101 | 0.41 | OKFHMN_17450 | rpmD | 50S ribosomal protein L30 | 0.33 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli Nissle 1917 | 0.41 | ECOLIN_RS18945 | | 50S ribosomal protein L30 | 0.33 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC102 | 0.41 | NIAGMN_15220 | rpmD | 50S ribosomal protein L30 | 0.33 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC99 | 0.41 | KEDOAH_10690 | rpmD | 50S ribosomal protein L30 | 0.33 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC62 | 0.41 | BNILDI_02270 | rpmD | 50S ribosomal protein L30 | 0.33 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECOR38 | 0.41 | HEPCGN_16280 | rpmD | 50S ribosomal protein L30 | 0.33 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli BW25113 | 0.41 | b3302 | rpmD | 50S ribosomal protein L30 (NCBI) | 0.33 | b2951 | yggS | predicted enzyme (NCBI) | — | — |
| Escherichia coli ECRC101 | 0.41 | MCAODC_07980 | rpmD | 50S ribosomal protein L30 | 0.33 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli BL21 | 0.41 | ECD_03153 | | 50S ribosomal subunit protein L30 | 0.33 | ECD_02781 | | UPF0001 family protein, PLP-binding | — | — |
| Escherichia coli ECRC98 | 0.41 | JDDGAC_21080 | rpmD | 50S ribosomal protein L30 | 0.33 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECOR27 | 0.41 | NOLOHH_09250 | rpmD | 50S ribosomal protein L30 | 0.33 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia fergusonii Becca | 0.41 | EFB2_00521 | | 50S ribosomal protein L30 | 0.33 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.41 | GFF2378 | | LSU ribosomal protein L30p (L7e) | 0.33 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS25750 | | 50S ribosomal protein L30 | 0.33 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | — | — |
| Enterobacter asburiae PDN3 | 0.41 | EX28DRAFT_0024 | | ribosomal protein L30, bacterial/organelle | 0.34 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | — | — |
| Enterobacter sp. TBS_079 | 0.41 | MPMX20_04209 | | 50S ribosomal protein L30 | 0.31 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | — | — |
| Serratia liquefaciens MT49 | 0.40 | IAI46_23345 | | 50S ribosomal protein L30 | 0.27 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_13050 | | 50S ribosomal protein L30 | 0.31 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | — | — |
| Parabacteroides merdae CL09T00C40 | 0.40 | HMPREF1078_RS16890 | | 50S ribosomal protein L30 | 0.24 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS22565 | rpmD | 50S ribosomal protein L30 | 0.30 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
Not shown: 0 genomes with orthologs for CCNA_01324 only; 36 genomes with orthologs for CCNA_03861 only