Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS17890 in Burkholderia phytofirmans PsJN

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS17890 shikimate kinase 0.74 9
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.97 ABIE53_003741 shikimate kinase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.98 H281DRAFT_05614 shikimate kinase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.92 QEN71_RS28040 shikimate kinase 0.79 12
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.70 RPSI07_RS10295 shikimate kinase 0.61 55
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.70 UW163_RS06675 shikimate kinase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.70 RALBFv3_RS06940 shikimate kinase low > 76
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.71 RS_RS14885 shikimate kinase 0.55 13
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.74 ABZR87_RS02595 shikimate kinase 0.61 25
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.72 RR42_RS19010 shikimate kinase 0.90 1
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.44 OH686_10020 Shikimate kinase I low > 80
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.43 PP_5079 Shikimate kinase — —
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.44 Shewana3_3894 aroK shikimate kinase I (RefSeq) — —
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.44 Psyr_0408 shikimate kinase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.44 Psyr_0408 shikimate kinase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.43 AO356_09390 shikimate kinase — —
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.44 PS417_01980 shikimate kinase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.44 PFLU_RS02025 shikimate kinase AroK — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.44 PFLU_RS02025 shikimate kinase AroK — —
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.40 HP15_479 shikimate kinase I — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.44 CSW01_13305 shikimate kinase low > 62
Castellaniella sp019104865 MT123 0.44 ABCV34_RS11630 shikimate dehydrogenase 0.42 ABCV34_RS12700 shikimate kinase — —
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.47 Psest_3714 Shikimate kinase — —
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.45 SO0286 aroK shikimate kinase (NCBI ptt file) — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.43 AO353_12500 shikimate kinase 0.62 54
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.45 Sama_3368 aroK shikimate kinase I (RefSeq) — —
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.43 IAI47_01890 shikimate kinase AroK — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.45 Shew_0213 shikimate kinase I (RefSeq) — —
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.43 b3390 aroK shikimate kinase I (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.43 OHPLBJKB_00313 Shikimate kinase 1 — —
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.43 ECD_03242 shikimate kinase I low > 61
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.43 BNILDI_02620 aroK shikimate kinase AroK — —
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.43 NOLOHH_08900 aroK shikimate kinase AroK low > 75
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.43 HEPCGN_15930 aroK shikimate kinase AroK low > 87
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.43 ECOLIN_RS19365 shikimate kinase AroK — —
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.49 Ac3H11_3449 Shikimate kinase I (EC 2.7.1.71) 0.96 7
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.43 EFB2_00438 Shikimate kinase 1 low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.44 EX28DRAFT_4152 shikimate kinase (EC 2.7.1.71) low > 76
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.43 IAI46_23705 shikimate kinase AroK — —
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.44 LU632_RS22870 aroK shikimate kinase AroK — —
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.43 BWI76_RS26090 shikimate kinase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.40 GFF629 Shikimate kinase I (EC 2.7.1.71) low > 78
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.44 MPMX20_04279 Shikimate kinase 1 low > 85
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.44 GFF5324 Shikimate kinase I (EC 2.7.1.71) low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.49 MPMX26_02811 Shikimate kinase 1 — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.38 DZA65_RS20765 shikimate kinase AroK — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.45 MIT1002_00448 Shikimate kinase 1 — —
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.38 DDA3937_RS19550 shikimate kinase AroK — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.38 HGI48_RS19680 shikimate kinase AroK — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.48 ABID97_RS23260 shikimate kinase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.44 HER17_RS01775 shikimate kinase AroK — —
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.32 Xcc-8004.1616.1 Shikimate kinase I (EC 2.7.1.71) low > 74
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.43 B158DRAFT_0763 shikimate kinase (EC 2.7.1.71) — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.23 DVU0892 aroK-1 shikimate kinase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.27 DvMF_1410 Shikimate kinase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c35150 shikimate dehydrogenase AroE 0.40 PGA1_c14090 shikimate kinase AroK — —
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.29 CCNA_03103 shikimate kinase (EC 2.7.1.71) (from data) 0.98 1
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.29 CCNA_03103 shikimate kinase low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.21 ABZR88_RS19855 shikimate kinase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.24 Rv2539c Shikimate kinase AroK (SK) — —

Not shown: 31 genomes with orthologs for BPHYT_RS16975 only; 8 genomes with orthologs for BPHYT_RS17890 only