Conservation of cofitness between BBR_RS19470 and BBR_RS15680 in Bifidobacterium breve UCC2003

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS19470 succinyl-diaminopimelate desuccinylase 1.0 BBR_RS15680 succinate--CoA ligase subunit alpha 0.88 10
Mycobacterium tuberculosis H37Rv 0.36 Rv1202 Probable succinyl-diaminopimelate desuccinylase DapE 0.56 Rv0952 Probable succinyl-CoA synthetase (alpha chain) SucD (SCS-alpha) — —
Klebsiella michiganensis M5al 0.12 BWI76_RS10270 acetylornithine deacetylase 0.45 BWI76_RS08430 succinate--CoA ligase subunit alpha low > 92
Rhizobium sp. OAE497 0.12 ABIE40_RS24525 acetylornithine deacetylase 0.40 ABIE40_RS17990 succinate--CoA ligase subunit alpha — —
Pseudomonas simiae WCS417 0.11 PS417_18910 acetylornithine deacetylase 0.42 PS417_08915 succinyl-CoA synthetase subunit alpha — —
Azospirillum sp. SherDot2 0.11 MPMX19_03397 Acetylornithine deacetylase 0.36 MPMX19_04434 Succinate--CoA ligase [ADP-forming] subunit alpha low > 112
Pseudomonas putida KT2440 0.11 PP_3571 putative Acetylornithine deacetylase 0.42 PP_4185 succinyl-CoA synthetase alpha subunit — —
Pseudomonas fluorescens FW300-N2C3 0.11 AO356_25400 acetylornithine deacetylase 0.41 AO356_19715 succinyl-CoA synthetase subunit alpha — —
Azospirillum brasilense Sp245 0.11 AZOBR_RS30425 acetylornithine deacetylase 0.36 AZOBR_RS14070 succinyl-CoA synthetase subsunit alpha low > 97
Pseudomonas fluorescens FW300-N2E3 0.11 AO353_29125 acetylornithine deacetylase 0.42 AO353_01815 succinyl-CoA synthetase subunit alpha — —
Sinorhizobium meliloti 1021 0.10 SMa1836 acetylornithine deacetylase 0.38 SMc02481 succinyl-CoA synthetase subunit alpha — —
Paraburkholderia sabiae LMG 24235 0.10 QEN71_RS11205 acetylornithine deacetylase 0.40 QEN71_RS33990 succinate--CoA ligase subunit alpha low > 153
Pseudomonas fluorescens SBW25 0.10 PFLU_RS20950 acetylornithine deacetylase 0.42 PFLU_RS08975 succinate--CoA ligase subunit alpha — —
Pseudomonas fluorescens SBW25-INTG 0.10 PFLU_RS20950 acetylornithine deacetylase 0.42 PFLU_RS08975 succinate--CoA ligase subunit alpha — —
Pectobacterium carotovorum WPP14 0.10 HER17_RS15310 succinyl-diaminopimelate desuccinylase 0.45 HER17_RS14915 succinate--CoA ligase subunit alpha — —
Erwinia tracheiphila SCR3 0.10 LU632_RS08355 dapE succinyl-diaminopimelate desuccinylase 0.45 LU632_RS16080 sucD succinate--CoA ligase subunit alpha — —
Escherichia coli ECRC62 0.10 BNILDI_12445 dapE succinyl-diaminopimelate desuccinylase 0.45 BNILDI_21295 sucD succinate--CoA ligase subunit alpha — —
Escherichia fergusonii Becca 0.10 EFB2_01416 Succinyl-diaminopimelate desuccinylase 0.45 EFB2_03377 Succinate--CoA ligase [ADP-forming] subunit alpha — —
Escherichia coli BW25113 0.10 b2472 dapE succinyl-diaminopimelate desuccinylase (NCBI) 0.45 b0729 sucD succinyl-CoA synthetase subunit alpha (NCBI) — —
Pseudomonas fluorescens FW300-N2E2 0.10 Pf6N2E2_1339 Acetylornithine deacetylase (EC 3.5.1.16) 0.41 Pf6N2E2_5859 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.10 OHPLBJKB_01259 Succinyl-diaminopimelate desuccinylase 0.45 OHPLBJKB_02988 Succinate--CoA ligase [ADP-forming] subunit alpha — —
Escherichia coli BL21 0.10 ECD_02363 N-succinyl-diaminopimelate deacylase 0.45 ECD_00688 succinyl-CoA synthetase, NAD(P)-binding, alpha subunit — —
Escherichia coli ECOR27 0.10 NOLOHH_13635 dapE succinyl-diaminopimelate desuccinylase 0.45 NOLOHH_23300 sucD succinate--CoA ligase subunit alpha — —
Escherichia coli ECRC102 0.10 NIAGMN_19725 dapE succinyl-diaminopimelate desuccinylase 0.45 NIAGMN_04960 sucD succinate--CoA ligase subunit alpha — —
Enterobacter sp. TBS_079 0.10 MPMX20_03333 Succinyl-diaminopimelate desuccinylase 0.45 MPMX20_01357 Succinate--CoA ligase [ADP-forming] subunit alpha — —
Escherichia coli ECRC99 0.10 KEDOAH_06265 dapE succinyl-diaminopimelate desuccinylase 0.45 KEDOAH_21055 sucD succinate--CoA ligase subunit alpha — —
Escherichia coli Nissle 1917 0.10 ECOLIN_RS14105 succinyl-diaminopimelate desuccinylase 0.45 ECOLIN_RS03885 succinate--CoA ligase subunit alpha — —
Escherichia coli ECRC98 0.10 JDDGAC_25900 dapE succinyl-diaminopimelate desuccinylase 0.45 JDDGAC_10565 sucD succinate--CoA ligase subunit alpha — —
Escherichia coli ECRC101 0.10 MCAODC_12485 dapE succinyl-diaminopimelate desuccinylase 0.45 MCAODC_26130 sucD succinate--CoA ligase subunit alpha — —
Ralstonia sp. UNC404CL21Col 0.10 ABZR87_RS02060 acetylornithine deacetylase 0.40 ABZR87_RS07985 succinate--CoA ligase subunit alpha — —
Escherichia coli ECRC100 0.10 OKFHMN_21955 dapE succinyl-diaminopimelate desuccinylase 0.45 OKFHMN_06910 sucD succinate--CoA ligase subunit alpha — —
Escherichia coli ECOR38 0.10 HEPCGN_21125 dapE succinyl-diaminopimelate desuccinylase 0.45 HEPCGN_01320 sucD succinate--CoA ligase subunit alpha — —
Ralstonia solanacearum PSI07 0.10 RPSI07_RS10860 acetylornithine deacetylase 0.39 RPSI07_RS21240 succinate--CoA ligase subunit alpha low > 81
Paraburkholderia graminis OAS925 0.10 ABIE53_001520 acetylornithine deacetylase 0.38 ABIE53_003444 succinyl-CoA synthetase alpha subunit low > 113
Serratia liquefaciens MT49 0.10 IAI46_18740 succinyl-diaminopimelate desuccinylase 0.45 IAI46_06290 succinate--CoA ligase subunit alpha — —
Enterobacter asburiae PDN3 0.10 EX28DRAFT_0189 succinyldiaminopimelate desuccinylase (EC 3.5.1.18) 0.45 EX28DRAFT_2263 succinyl-CoA synthetase, alpha subunit — —
Pantoea sp. MT58 0.10 IAI47_05300 succinyl-diaminopimelate desuccinylase 0.45 IAI47_13730 succinate--CoA ligase subunit alpha — —
Paraburkholderia bryophila 376MFSha3.1 0.10 H281DRAFT_04940 acetylornithine deacetylase 0.38 H281DRAFT_04204 succinyl-CoA synthetase (ADP-forming) alpha subunit — —
Ralstonia solanacearum UW163 0.10 UW163_RS07245 acetylornithine deacetylase 0.40 UW163_RS01605 succinate--CoA ligase subunit alpha — —
Ralstonia solanacearum IBSBF1503 0.10 RALBFv3_RS06380 acetylornithine deacetylase 0.40 RALBFv3_RS12030 succinate--CoA ligase subunit alpha low > 76
Marinobacter adhaerens HP15 0.09 HP15_1159 succinyl-diaminopimelate desuccinylase 0.46 HP15_1525 succinyl-CoA synthetase, alpha subunit — —
Ralstonia solanacearum GMI1000 0.09 RS_RS08270 acetylornithine deacetylase 0.39 RS_RS02780 succinate--CoA ligase subunit alpha low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.09 Psyr_0771 acetylornithine deacetylase 0.42 Psyr_2013 succinyl-CoA synthetase (ADP-forming) alpha subunit — —
Pseudomonas syringae pv. syringae B728a 0.09 Psyr_0771 acetylornithine deacetylase 0.42 Psyr_2013 succinyl-CoA synthetase (ADP-forming) alpha subunit — —
Bacteroides ovatus ATCC 8483 0.09 BACOVA_03358 peptidase dimerization domain protein 0.42 BACOVA_02526 succinate-CoA ligase, alpha subunit low > 94
Burkholderia phytofirmans PsJN 0.09 BPHYT_RS11720 acetylornithine deacetylase 0.38 BPHYT_RS16340 succinyl-CoA synthetase subunit alpha — —
Bacteroides thetaiotaomicron VPI-5482 0.09 BT3549 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) 0.44 BT0787 succinyl-CoA synthetase alpha chain (NCBI ptt file) low > 81
Phaeobacter inhibens DSM 17395 0.09 PGA1_c36420 succinyl-diaminopimelate desuccinylase DapE 0.38 PGA1_c03610 succinyl-CoA ligase [ADP-forming] subunit alpha — —
Acidovorax sp. GW101-3H11 0.09 Ac3H11_4519 Acetylornithine deacetylase (EC 3.5.1.16) 0.38 Ac3H11_1251 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) — —
Pseudomonas fluorescens FW300-N1B4 0.09 Pf1N1B4_4930 Acetylornithine deacetylase (EC 3.5.1.16) 0.42 Pf1N1B4_3685 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) low > 87
Cupriavidus basilensis FW507-4G11 0.09 RR42_RS07840 acetylornithine deacetylase 0.40 RR42_RS03100 succinate--CoA ligase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.08 ABZR88_RS04280 M20 family metallo-hydrolase 0.33 ABZR88_RS20550 succinate--CoA ligase subunit alpha — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.08 GFF4550 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) 0.38 GFF2505 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) — —
Shewanella amazonensis SB2B 0.08 Sama_1647 succinyl-diaminopimelate desuccinylase (RefSeq) 0.44 Sama_1430 succinyl-CoA synthetase alpha chain (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.08 TX73_003230 succinyl-diaminopimelate desuccinylase 0.39 TX73_000985 succinate--CoA ligase subunit alpha — —
Rhodanobacter denitrificans MT42 0.08 LRK55_RS13990 succinyl-diaminopimelate desuccinylase 0.41 LRK55_RS04760 succinate--CoA ligase subunit alpha — —
Rhodanobacter denitrificans FW104-10B01 0.08 LRK54_RS14270 succinyl-diaminopimelate desuccinylase 0.41 LRK54_RS04980 succinate--CoA ligase subunit alpha — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.07 CA264_06230 acetylornithine deacetylase 0.34 CA264_13760 succinate--CoA ligase subunit alpha — —
Pseudomonas sp. S08-1 0.07 OH686_06560 succinyl-diaminopimelate desuccinylase 0.42 OH686_01950 Succinyl-CoA ligase [ADP-forming] alpha chain — —
Pseudomonas fluorescens GW456-L13 0.07 PfGW456L13_4721 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) 0.42 PfGW456L13_4265 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) — —
Acinetobacter radioresistens SK82 0.06 MPMX26_02507 Succinyl-diaminopimelate desuccinylase 0.42 MPMX26_00755 Succinate--CoA ligase [ADP-forming] subunit alpha — —
Vibrio cholerae E7946 ATCC 55056 0.06 CSW01_10735 succinyl-diaminopimelate desuccinylase 0.44 CSW01_10415 succinate--CoA ligase subunit alpha — —
Rhodanobacter sp. FW510-T8 0.06 OKGIIK_03135 dapE succinyl-diaminopimelate desuccinylase 0.42 OKGIIK_01765 sucD succinate--CoA ligase subunit alpha — —

Not shown: 4 genomes with orthologs for BBR_RS19470 only; 33 genomes with orthologs for BBR_RS15680 only