Conservation of cofitness between BBR_RS19470 and BBR_RS15675 in Bifidobacterium breve UCC2003

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bifidobacterium breve UCC2003 1.0 BBR_RS19470 succinyl-diaminopimelate desuccinylase 1.0 BBR_RS15675 ADP-forming succinate--CoA ligase subunit beta 0.87 12
Mycobacterium tuberculosis H37Rv 0.36 Rv1202 Probable succinyl-diaminopimelate desuccinylase DapE 0.44 Rv0951 Probable succinyl-CoA synthetase (beta chain) SucC (SCS-beta) — —
Klebsiella michiganensis M5al 0.12 BWI76_RS10270 acetylornithine deacetylase 0.27 BWI76_RS08425 succinyl-CoA ligase subunit beta low > 92
Rhizobium sp. OAE497 0.12 ABIE40_RS24525 acetylornithine deacetylase 0.23 ABIE40_RS17995 ADP-forming succinate--CoA ligase subunit beta — —
Pseudomonas simiae WCS417 0.11 PS417_18910 acetylornithine deacetylase 0.30 PS417_08910 succinyl-CoA synthetase subunit beta — —
Azospirillum sp. SherDot2 0.11 MPMX19_03397 Acetylornithine deacetylase 0.26 MPMX19_04435 Succinate--CoA ligase [ADP-forming] subunit beta low > 112
Pseudomonas putida KT2440 0.11 PP_3571 putative Acetylornithine deacetylase 0.28 PP_4186 succinyl-CoA synthetase, beta subunit glutaryl-CoA synthetase, beta subunit — —
Pseudomonas fluorescens FW300-N2C3 0.11 AO356_25400 acetylornithine deacetylase 0.30 AO356_19710 succinyl-CoA synthetase subunit beta — —
Azospirillum brasilense Sp245 0.11 AZOBR_RS30425 acetylornithine deacetylase 0.26 AZOBR_RS14065 malate--CoA ligase subunit beta low > 97
Pseudomonas fluorescens FW300-N2E3 0.11 AO353_29125 acetylornithine deacetylase 0.30 AO353_01820 succinyl-CoA synthetase subunit beta — —
Paraburkholderia sabiae LMG 24235 0.10 QEN71_RS11205 acetylornithine deacetylase 0.27 QEN71_RS33995 malate--CoA ligase subunit beta low > 153
Sinorhizobium meliloti 1021 0.10 SMa1836 acetylornithine deacetylase 0.23 SMc02480 succinyl-CoA synthetase subunit beta — —
Pseudomonas fluorescens SBW25-INTG 0.10 PFLU_RS20950 acetylornithine deacetylase 0.30 PFLU_RS08970 ADP-forming succinate--CoA ligase subunit beta — —
Pseudomonas fluorescens SBW25 0.10 PFLU_RS20950 acetylornithine deacetylase 0.30 PFLU_RS08970 ADP-forming succinate--CoA ligase subunit beta — —
Pectobacterium carotovorum WPP14 0.10 HER17_RS15310 succinyl-diaminopimelate desuccinylase 0.28 HER17_RS14920 ADP-forming succinate--CoA ligase subunit beta — —
Erwinia tracheiphila SCR3 0.10 LU632_RS08355 dapE succinyl-diaminopimelate desuccinylase 0.28 LU632_RS16085 sucC ADP-forming succinate--CoA ligase subunit beta — —
Escherichia coli ECRC62 0.10 BNILDI_12445 dapE succinyl-diaminopimelate desuccinylase 0.27 BNILDI_21300 sucC ADP-forming succinate--CoA ligase subunit beta — —
Escherichia fergusonii Becca 0.10 EFB2_01416 Succinyl-diaminopimelate desuccinylase 0.27 EFB2_04542 Succinate--CoA ligase [ADP-forming] subunit beta — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.10 OHPLBJKB_01259 Succinyl-diaminopimelate desuccinylase 0.27 OHPLBJKB_02989 Succinate--CoA ligase [ADP-forming] subunit beta — —
Pseudomonas fluorescens FW300-N2E2 0.10 Pf6N2E2_1339 Acetylornithine deacetylase (EC 3.5.1.16) 0.30 Pf6N2E2_5858 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) — —
Escherichia coli BW25113 0.10 b2472 dapE succinyl-diaminopimelate desuccinylase (NCBI) 0.27 b0728 sucC succinyl-CoA synthetase subunit beta (NCBI) — —
Escherichia coli BL21 0.10 ECD_02363 N-succinyl-diaminopimelate deacylase 0.27 ECD_00687 succinyl-CoA synthetase, beta subunit — —
Escherichia coli ECOR27 0.10 NOLOHH_13635 dapE succinyl-diaminopimelate desuccinylase 0.27 NOLOHH_23305 sucC ADP-forming succinate--CoA ligase subunit beta — —
Escherichia coli ECRC98 0.10 JDDGAC_25900 dapE succinyl-diaminopimelate desuccinylase 0.27 JDDGAC_10570 sucC ADP-forming succinate--CoA ligase subunit beta — —
Escherichia coli Nissle 1917 0.10 ECOLIN_RS14105 succinyl-diaminopimelate desuccinylase 0.27 ECOLIN_RS23440 ADP-forming succinate--CoA ligase subunit beta — —
Enterobacter sp. TBS_079 0.10 MPMX20_03333 Succinyl-diaminopimelate desuccinylase 0.27 MPMX20_01356 Succinate--CoA ligase [ADP-forming] subunit beta — —
Escherichia coli ECRC101 0.10 MCAODC_12485 dapE succinyl-diaminopimelate desuccinylase 0.27 MCAODC_26135 sucC ADP-forming succinate--CoA ligase subunit beta — —
Escherichia coli ECRC100 0.10 OKFHMN_21955 dapE succinyl-diaminopimelate desuccinylase 0.27 OKFHMN_06915 sucC ADP-forming succinate--CoA ligase subunit beta — —
Escherichia coli ECRC102 0.10 NIAGMN_19725 dapE succinyl-diaminopimelate desuccinylase 0.27 NIAGMN_04965 sucC ADP-forming succinate--CoA ligase subunit beta — —
Ralstonia sp. UNC404CL21Col 0.10 ABZR87_RS02060 acetylornithine deacetylase 0.27 ABZR87_RS07980 ADP-forming succinate--CoA ligase subunit beta — —
Escherichia coli ECRC99 0.10 KEDOAH_06265 dapE succinyl-diaminopimelate desuccinylase 0.27 KEDOAH_21050 sucC ADP-forming succinate--CoA ligase subunit beta — —
Escherichia coli ECOR38 0.10 HEPCGN_21125 dapE succinyl-diaminopimelate desuccinylase 0.27 HEPCGN_01315 sucC ADP-forming succinate--CoA ligase subunit beta — —
Ralstonia solanacearum PSI07 0.10 RPSI07_RS10860 acetylornithine deacetylase 0.27 RPSI07_RS21245 ADP-forming succinate--CoA ligase subunit beta low > 81
Paraburkholderia graminis OAS925 0.10 ABIE53_001520 acetylornithine deacetylase 0.25 ABIE53_003445 succinyl-CoA synthetase beta subunit low > 113
Serratia liquefaciens MT49 0.10 IAI46_18740 succinyl-diaminopimelate desuccinylase 0.27 IAI46_06285 ADP-forming succinate--CoA ligase subunit beta — —
Enterobacter asburiae PDN3 0.10 EX28DRAFT_0189 succinyldiaminopimelate desuccinylase (EC 3.5.1.18) 0.27 EX28DRAFT_2264 succinyl-CoA synthetase, beta subunit — —
Paraburkholderia bryophila 376MFSha3.1 0.10 H281DRAFT_04940 acetylornithine deacetylase 0.26 H281DRAFT_04205 succinyl-CoA synthetase (ADP-forming) beta subunit — —
Pantoea sp. MT58 0.10 IAI47_05300 succinyl-diaminopimelate desuccinylase 0.28 IAI47_13735 ADP-forming succinate--CoA ligase subunit beta — —
Ralstonia solanacearum IBSBF1503 0.10 RALBFv3_RS06380 acetylornithine deacetylase 0.27 RALBFv3_RS12025 ADP-forming succinate--CoA ligase subunit beta low > 76
Ralstonia solanacearum UW163 0.10 UW163_RS07245 acetylornithine deacetylase 0.27 UW163_RS01610 ADP-forming succinate--CoA ligase subunit beta — —
Marinobacter adhaerens HP15 0.09 HP15_1159 succinyl-diaminopimelate desuccinylase 0.27 HP15_1524 succinyl-CoA synthetase, beta subunit — —
Ralstonia solanacearum GMI1000 0.09 RS_RS08270 acetylornithine deacetylase 0.27 RS_RS02775 succinyl-CoA ligase subunit beta low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.09 Psyr_0771 acetylornithine deacetylase 0.30 Psyr_2012 succinyl-CoA synthetase (ADP-forming) beta subunit — —
Pseudomonas syringae pv. syringae B728a 0.09 Psyr_0771 acetylornithine deacetylase 0.30 Psyr_2012 succinyl-CoA synthetase (ADP-forming) beta subunit — —
Bacteroides ovatus ATCC 8483 0.09 BACOVA_03358 peptidase dimerization domain protein 0.31 BACOVA_02527 succinate-CoA ligase, beta subunit low > 94
Burkholderia phytofirmans PsJN 0.09 BPHYT_RS11720 acetylornithine deacetylase 0.26 BPHYT_RS16345 succinyl-CoA ligase [ADP-forming] subunit beta — —
Bacteroides thetaiotaomicron VPI-5482 0.09 BT3549 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) 0.30 BT0788 succinyl-CoA synthetase beta chain (NCBI ptt file) low > 81
Phaeobacter inhibens DSM 17395 0.09 PGA1_c36420 succinyl-diaminopimelate desuccinylase DapE 0.25 PGA1_c03630 succinyl-CoA ligase [ADP-forming] subunit beta — —
Acidovorax sp. GW101-3H11 0.09 Ac3H11_4519 Acetylornithine deacetylase (EC 3.5.1.16) 0.29 Ac3H11_1252 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) — —
Pseudomonas fluorescens FW300-N1B4 0.09 Pf1N1B4_4930 Acetylornithine deacetylase (EC 3.5.1.16) 0.30 Pf1N1B4_3684 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) low > 87
Cupriavidus basilensis FW507-4G11 0.09 RR42_RS07840 acetylornithine deacetylase 0.27 RR42_RS03095 succinyl-CoA synthetase subunit beta low > 128
Shewanella amazonensis SB2B 0.08 Sama_1647 succinyl-diaminopimelate desuccinylase (RefSeq) 0.26 Sama_1429 sucC succinyl-CoA synthetase subunit beta (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.08 ABZR88_RS04280 M20 family metallo-hydrolase 0.24 ABZR88_RS07630 ADP-forming succinate--CoA ligase subunit beta — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.08 GFF4550 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) 0.30 GFF2504 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) — —
Rhodopseudomonas palustris CGA009 0.08 TX73_003230 succinyl-diaminopimelate desuccinylase 0.24 TX73_000990 ADP-forming succinate--CoA ligase subunit beta — —
Rhodanobacter denitrificans FW104-10B01 0.08 LRK54_RS14270 succinyl-diaminopimelate desuccinylase 0.28 LRK54_RS04985 ADP-forming succinate--CoA ligase subunit beta — —
Rhodanobacter denitrificans MT42 0.08 LRK55_RS13990 succinyl-diaminopimelate desuccinylase 0.28 LRK55_RS04765 ADP-forming succinate--CoA ligase subunit beta — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.07 CA264_06230 acetylornithine deacetylase 0.27 CA264_10470 succinate--CoA ligase subunit beta — —
Pseudomonas sp. S08-1 0.07 OH686_06560 succinyl-diaminopimelate desuccinylase 0.28 OH686_01955 Succinyl-CoA ligase [ADP-forming] beta chain — —
Pseudomonas fluorescens GW456-L13 0.07 PfGW456L13_4721 N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) 0.30 PfGW456L13_4266 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) — —
Acinetobacter radioresistens SK82 0.06 MPMX26_02507 Succinyl-diaminopimelate desuccinylase 0.27 MPMX26_00754 Succinate--CoA ligase [ADP-forming] subunit beta — —
Vibrio cholerae E7946 ATCC 55056 0.06 CSW01_10735 succinyl-diaminopimelate desuccinylase 0.26 CSW01_10420 succinyl-CoA ligase subunit beta — —
Rhodanobacter sp. FW510-T8 0.06 OKGIIK_03135 dapE succinyl-diaminopimelate desuccinylase 0.28 OKGIIK_01760 sucC ADP-forming succinate--CoA ligase subunit beta — —

Not shown: 4 genomes with orthologs for BBR_RS19470 only; 33 genomes with orthologs for BBR_RS15675 only