Conservation of cofitness between B158DRAFT_2275 and B158DRAFT_2302 in Kangiella aquimarina DSM 16071

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Kangiella aquimarina DSM 16071 1.0 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 1.0 B158DRAFT_2302 Uncharacterized protein conserved in bacteria 0.47 4
Marinobacter adhaerens HP15 0.54 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.77 HP15_2225 YciI-like protein low > 73
Rhodanobacter denitrificans MT42 0.44 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 LRK55_RS18180 YciI family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 LRK54_RS00280 YciI family protein low > 59
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.67 Xcc-8004.2360.1 YciL protein low > 74
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 OKGIIK_07030 YciI family protein low > 52
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 ABZR86_RS02840 YciI family protein low > 74
Lysobacter sp. OAE881 0.42 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 ABIE51_RS08790 YciI family protein low > 62
Acinetobacter radioresistens SK82 0.41 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.43 MPMX26_02640 Protein YciI low > 36
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS13170 23S rRNA methyltransferase 0.26 RR42_RS32875 hypothetical protein low > 128
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.25 QEN71_RS38165 YciI family protein low > 153
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 CSW01_08565 hypothetical protein low > 62
Pectobacterium carotovorum WPP14 0.37 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 HER17_RS10975 YciI family protein low > 75
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.72 PFLU_RS23925 YciI family protein low > 109
Pseudomonas fluorescens SBW25 0.37 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.72 PFLU_RS23925 YciI family protein low > 109
Dechlorosoma suillum PS 0.37 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.69 Dsui_2887 hypothetical protein low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.26 GFF1577 YciL protein low > 90
Rahnella sp. WP5 0.36 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.70 EX31_RS10020 YciI family protein low > 89
Pseudomonas simiae WCS417 0.36 PS417_20155 23S rRNA methyltransferase 0.73 PS417_22285 hypothetical protein low > 88
Escherichia coli ECRC98 0.36 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 JDDGAC_05905 yciI YciI family protein low > 86
Escherichia coli ECRC102 0.36 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 NIAGMN_27565 yciI YciI family protein — —
Escherichia coli ECRC101 0.36 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 MCAODC_21590 yciI YciI family protein low > 87
Escherichia coli ECRC100 0.36 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 OKFHMN_28670 yciI YciI family protein — —
Escherichia coli ECRC99 0.36 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 KEDOAH_25665 yciI YciI family protein — —
Escherichia coli BW25113 0.36 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.69 b1251 yciI orf, hypothetical protein (VIMSS) low > 76
Dickeya dadantii 3937 0.36 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 DDA3937_RS10420 YciI family protein low > 74
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.72 Psest_1886 Uncharacterized protein conserved in bacteria low > 67
Serratia liquefaciens MT49 0.36 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 IAI46_14115 YciI family protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 OHPLBJKB_02432 Protein YciI — —
Escherichia coli ECOR38 0.36 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 HEPCGN_25135 yciI YciI family protein low > 87
Escherichia coli Nissle 1917 0.36 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 ECOLIN_RS07555 YciI family protein — —
Escherichia coli ECOR27 0.35 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 NOLOHH_20380 yciI YciI family protein low > 75
Escherichia coli BL21 0.35 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.69 ECD_01225 putative DGPF domain-containing enzyme low > 61
Enterobacter sp. TBS_079 0.35 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 MPMX20_02577 Protein YciI low > 85
Dickeya dianthicola ME23 0.35 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 DZA65_RS10900 YciI family protein low > 75
Escherichia fergusonii Becca 0.35 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 EFB2_02674 Protein YciI low > 86
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.74 Pf1N1B4_3549 YciL protein low > 87
Dickeya dianthicola 67-19 0.35 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 HGI48_RS10425 YciI family protein low > 71
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_19055 23S rRNA methyltransferase 0.70 AO356_18485 hypothetical protein — —
Pseudomonas sp. S08-1 0.34 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.68 OH686_20785 YciL protein low > 80
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.68 Pf6N2E2_5623 YciL protein low > 103
Shewanella sp. ANA-3 0.34 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.72 Shewana3_1504 YciI-like protein (RefSeq) low > 73
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.68 EX28DRAFT_0921 Uncharacterized protein conserved in bacteria low > 76
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_02715 23S rRNA methyltransferase 0.74 AO353_18510 hypothetical protein low > 101
Pantoea sp. MT58 0.34 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 IAI47_09125 YciI family protein 0.56 47
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.71 Psyr_3588 YCII-related protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.71 Psyr_3588 YCII-related protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.68 GFF2737 YciL protein low > 78
Shewanella oneidensis MR-1 0.33 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.72 SO3036 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas sp. RS175 0.33 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 PFR28_03321 Protein YciI low > 88
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.74 PfGW456L13_4407 YciL protein low > 87
Pseudomonas putida KT2440 0.33 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.74 PP_4502 putative enzyme low > 96
Erwinia tracheiphila SCR3 0.32 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 LU632_RS12835 YciI family protein low > 74
Klebsiella michiganensis M5al 0.32 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.68 BWI76_RS17195 hypothetical protein low > 92
Shewanella amazonensis SB2B 0.31 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.73 Sama_2138 YciI-like protein (RefSeq) low > 62
Shewanella loihica PV-4 0.31 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.74 Shew_2261 YciI-like protein (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.25 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 MIT1002_01424 YciI-like protein low > 70
Azospirillum sp. SherDot2 0.15 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.24 MPMX19_02041 Protein YciI low > 112
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.30 ABZR88_RS06930 YciI family protein low > 71
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.25 AMB_RS21125 YciI family protein low > 64
Dinoroseobacter shibae DFL-12 0.15 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.26 Dshi_3413 YCII-related (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.14 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.27 Rru_A3572 YCII-related (NCBI) — —
Azospirillum brasilense Sp245 0.14 AZOBR_RS01195 RNA methyltransferase 0.28 AZOBR_RS00285 hypothetical protein low > 97
Sinorhizobium meliloti 1021 0.13 SMc00974 RNA methyltransferase 0.33 SMc03228 YciI-like protein low > 103
Phaeobacter inhibens DSM 17395 0.13 PGA1_c34810 putative RNA methyltransferase 0.28 PGA1_c35470 protein YciI low > 62
Agrobacterium fabrum C58 0.12 Atu0735 RNA methyltransferase 0.30 Atu2649 hypothetical protein low > 89
Rhizobium sp. OAE497 0.12 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.38 ABIE40_RS18050 YciI-like protein low > 107

Not shown: 29 genomes with orthologs for B158DRAFT_2275 only; 0 genomes with orthologs for B158DRAFT_2302 only