| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 1.0 | B158DRAFT_0533 | | Xaa-Pro aminopeptidase | 0.77 | 20 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.46 | DDA3937_RS02395 | | Xaa-Pro aminopeptidase | low | > 74 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | DZA65_RS02455 | | Xaa-Pro aminopeptidase | low | > 75 |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | HEPCGN_18795 | pepP | Xaa-Pro aminopeptidase | low | > 87 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | HGI48_RS02350 | | Xaa-Pro aminopeptidase | low | > 71 |
| Shewanella loihica PV-4 | 0.55 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.38 | Shew_2358 | | peptidase M24 (RefSeq) | low | > 60 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | ECOLIN_RS16190 | | Xaa-Pro aminopeptidase | low | > 55 |
| Escherichia coli BW25113 | 0.55 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.45 | b2908 | pepP | proline aminopeptidase P II (NCBI) | — | — |
| Escherichia coli BL21 | 0.55 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.45 | ECD_02740 | | proline aminopeptidase P II | 0.62 | 61 |
| Escherichia fergusonii Becca | 0.55 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.45 | EFB2_00994 | | Xaa-Pro aminopeptidase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.45 | OHPLBJKB_00807 | | Xaa-Pro aminopeptidase | low | > 73 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | MCAODC_10025 | pepP | Xaa-Pro aminopeptidase | low | > 87 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | NIAGMN_17270 | pepP | Xaa-Pro aminopeptidase | — | — |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | KEDOAH_08635 | pepP | Xaa-Pro aminopeptidase | — | — |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | OKFHMN_19505 | pepP | Xaa-Pro aminopeptidase | low | > 80 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | JDDGAC_23145 | pepP | Xaa-Pro aminopeptidase | low | > 86 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | NOLOHH_11415 | pepP | Xaa-Pro aminopeptidase | low | > 75 |
| Escherichia coli ECRC62 | 0.54 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | BNILDI_09950 | pepP | Xaa-Pro aminopeptidase | low | > 75 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.47 | IAI46_20875 | | Xaa-Pro aminopeptidase | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_0709 | | pseudouridine synthase, RluA family | 0.58 | Psest_0175 | | Xaa-Pro aminopeptidase | low | > 67 |
| Pseudomonas fluorescens SBW25 | 0.53 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | PFLU_RS28945 | | Xaa-Pro aminopeptidase | low | > 109 |
| Marinobacter adhaerens HP15 | 0.53 | HP15_527 | | pseudouridine synthase, RluA family | 0.56 | HP15_3203 | | proline aminopeptidase P II | low | > 73 |
| Pseudomonas fluorescens SBW25-INTG | 0.53 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | PFLU_RS28945 | | Xaa-Pro aminopeptidase | low | > 109 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.44 | MIT1002_02984 | | Xaa-Pro aminopeptidase | low | > 70 |
| Erwinia tracheiphila SCR3 | 0.53 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | LU632_RS05880 | pepP | Xaa-Pro aminopeptidase | low | > 74 |
| Pseudomonas simiae WCS417 | 0.53 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.57 | PS417_27285 | | Xaa-Pro aminopeptidase | — | — |
| Pectobacterium carotovorum WPP14 | 0.53 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.46 | HER17_RS19115 | | Xaa-Pro aminopeptidase | low | > 75 |
| Pseudomonas fluorescens GW456-L13 | 0.53 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.57 | PfGW456L13_896 | | Xaa-Pro aminopeptidase (EC 3.4.11.9) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.58 | AO356_13010 | | Xaa-Pro aminopeptidase | low | > 104 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.44 | EX28DRAFT_2960 | | Xaa-Pro aminopeptidase | low | > 76 |
| Pseudomonas fluorescens FW300-N2E3 | 0.53 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.58 | AO353_08760 | | Xaa-Pro aminopeptidase | low | > 101 |
| Pantoea sp. MT58 | 0.53 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | IAI47_03750 | | Xaa-Pro aminopeptidase | 0.43 | 25 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.44 | GFF3009 | | Xaa-Pro aminopeptidase (EC 3.4.11.9) | low | > 78 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.46 | BWI76_RS23895 | | Xaa-Pro aminopeptidase | low | > 92 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.58 | Pf1N1B4_2229 | | Xaa-Pro aminopeptidase (EC 3.4.11.9) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.58 | Psyr_0321 | | aminopeptidase P, Metallo peptidase, MEROPS family M24B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.58 | Psyr_0321 | | aminopeptidase P, Metallo peptidase, MEROPS family M24B | low | > 86 |
| Pseudomonas sp. RS175 | 0.52 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.58 | PFR28_04321 | | Xaa-Pro aminopeptidase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.58 | Pf6N2E2_4480 | | Xaa-Pro aminopeptidase (EC 3.4.11.9) | — | — |
| Rahnella sp. WP5 | 0.52 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.45 | EX31_RS21495 | | Xaa-Pro aminopeptidase | low | > 89 |
| Shewanella amazonensis SB2B | 0.52 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.37 | Sama_1534 | | xaa-pro aminopeptidase (RefSeq) | — | — |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.45 | MPMX20_03767 | | Xaa-Pro aminopeptidase | low | > 85 |
| Pseudomonas putida KT2440 | 0.52 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.58 | PP_5200 | | proline aminopeptidase P II | — | — |
| Pseudomonas sp. S08-1 | 0.51 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.58 | OH686_11205 | | Xaa-Pro aminopeptidase | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.48 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.47 | Xcc-8004.1147.1 | | Xaa-Pro aminopeptidase (EC 3.4.11.9) | low | > 74 |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.48 | ABIE51_RS17320 | | aminopeptidase P N-terminal domain-containing protein | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | ABZR86_RS11970 | | aminopeptidase P N-terminal domain-containing protein | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | LRK55_RS11420 | | aminopeptidase P N-terminal domain-containing protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | LRK54_RS11695 | | aminopeptidase P N-terminal domain-containing protein | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.43 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.48 | OKGIIK_12200 | pepP | Xaa-Pro aminopeptidase | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.47 | MPMX26_02286 | | Xaa-Pro aminopeptidase | low | > 36 |
| Ralstonia solanacearum IBSBF1503 | 0.40 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.38 | RALBFv3_RS11710 | | Xaa-Pro aminopeptidase | — | — |
| Ralstonia solanacearum UW163 | 0.40 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.38 | UW163_RS01875 | | Xaa-Pro aminopeptidase | — | — |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.38 | RPSI07_RS21505 | | Xaa-Pro aminopeptidase | — | — |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS08205 | | RluA family pseudouridine synthase | 0.39 | RS_RS02535 | | Xaa-Pro aminopeptidase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.38 | ABZR87_RS07665 | | aminopeptidase P N-terminal domain-containing protein | low | > 80 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.34 | Echvi_0642 | | pseudouridine synthase, RluA family | 0.23 | Echvi_0053 | | Xaa-Pro aminopeptidase | low | > 79 |
| Synechococcus elongatus PCC 7942 | 0.33 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | 0.40 | Synpcc7942_0075 | pepP | aminopeptidase P. Metallo peptidase. MEROPS family M24B | low | > 38 |
| Phocaeicola vulgatus CL09T03C04 | 0.33 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | 0.19 | HMPREF1058_RS14845 | | aminopeptidase P family protein | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.33 | ABI39_RS02845 | | RluA family pseudouridine synthase | 0.19 | ABI39_RS10560 | | aminopeptidase P family protein | low | > 72 |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_03528 | | pseudouridine synthase, RluA family | 0.18 | BACOVA_01617 | | peptidase, M24 family | low | > 94 |
| Bacteroides stercoris CC31F | 0.33 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | 0.17 | HMPREF1181_RS00920 | | aminopeptidase P family protein | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.33 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | 0.17 | BT2522 | | Xaa-Pro aminopeptidase (NCBI ptt file) | low | > 81 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.35 | GFF2485 | | Xaa-Pro aminopeptidase (EC 3.4.11.9) | low | > 90 |
| Variovorax sp. SCN45 | 0.30 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.38 | GFF7179 | | Xaa-Pro aminopeptidase (EC 3.4.11.9) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.34 | Ac3H11_652 | | Xaa-Pro aminopeptidase (EC 3.4.11.9) | low | > 79 |
| Parabacteroides merdae CL09T00C40 | 0.30 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | 0.15 | HMPREF1078_RS02325 | | Xaa-Pro aminopeptidase | low | > 61 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.29 | CA265_RS14415 | | pseudouridine synthase | 0.24 | CA265_RS22815 | | X-Pro aminopeptidase | low | > 88 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.29 | CA264_15205 | | RNA pseudouridine synthase | 0.27 | CA264_20445 | | peptidase M24 family protein | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.29 | ABZR88_RS03985 | | RluA family pseudouridine synthase | 0.24 | ABZR88_RS17305 | | aminopeptidase P N-terminal domain-containing protein | low | > 71 |
| Fusobacterium nucleatum SB010 | 0.29 | HUW76_08575 | | RluA family pseudouridine synthase | 0.15 | HUW76_00995 | | aminopeptidase P family protein | low | > 35 |
| Variovorax sp. OAS795 | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.37 | ABID97_RS02460 | | aminopeptidase P N-terminal domain-containing protein | low | > 91 |
| Bifidobacterium breve UCC2003 | 0.19 | BBR_RS17135 | | RluA family pseudouridine synthase | 0.21 | BBR_RS16850 | | peptidase M24 family protein | low | > 34 |
Not shown: 20 genomes with orthologs for B158DRAFT_2532 only; 7 genomes with orthologs for B158DRAFT_0533 only