Conservation of cofitness between Atu0298 and Atu3755 in Agrobacterium fabrum C58

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0298 orotidine 5 1.0 Atu3755 phosphoribosylaminoimidazole carboxylase ATPase subunit 0.90 10
Rhizobium sp. OAE497 0.79 ABIE40_RS01345 orotidine-5'-phosphate decarboxylase 0.69 ABIE40_RS16070 5-(carboxyamino)imidazole ribonucleotide synthase — —
Sinorhizobium meliloti 1021 0.75 SMc00412 orotidine 5'-phosphate decarboxylase 0.66 SMc04002 phosphoribosylaminoimidazole carboxylase ATPase subunit 0.92 5
Bosea sp. OAE506 0.53 ABIE41_RS00050 orotidine-5'-phosphate decarboxylase 0.42 ABIE41_RS09245 5-(carboxyamino)imidazole ribonucleotide synthase 0.69 5
Rhodopseudomonas palustris CGA009 0.51 TX73_001750 orotidine-5'-phosphate decarboxylase 0.42 TX73_021645 5-(carboxyamino)imidazole ribonucleotide synthase — —
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_00104 orotidine 5'-phosphate decarboxylase 0.45 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit low > 67
Caulobacter crescentus NA1000 0.44 CCNA_00104 orotidine 5'-phosphate decarboxylase 0.45 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit 0.87 38
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS14665 orotidine-5'-phosphate decarboxylase 0.43 A4249_RS08935 5-(carboxyamino)imidazole ribonucleotide synthase — —
Phaeobacter inhibens DSM 17395 0.36 PGA1_c32450 orotidine 5'-phosphate decarboxylase PyrF 0.46 PGA1_c24870 phosphoribosylaminoimidazole carboxylase ATPase subunit PurK 0.84 15
Alteromonas macleodii MIT1002 0.36 MIT1002_02184 Orotidine 5'-phosphate decarboxylase 0.26 MIT1002_00522 N5-carboxyaminoimidazole ribonucleotide synthase 0.75 44
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_2331 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.27 B158DRAFT_0610 5-(carboxyamino)imidazole ribonucleotide synthase — —
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_09560 orotidine-5'-phosphate decarboxylase 0.28 CSW01_00260 5-(carboxyamino)imidazole ribonucleotide synthase 0.46 51
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_2569 pyrF orotidine 5'-phosphate decarboxylase 0.30 Synpcc7942_1428 purK phosphoribosylaminoimidazole carboxylase ATPase subunit — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0234 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.39 Ga0059261_1428 5-(carboxyamino)imidazole ribonucleotide synthase — —
Marinobacter adhaerens HP15 0.32 HP15_1370 orotidine 5'-phosphate decarboxylase 0.34 HP15_2350 phosphoribosylaminoimidazole carboxylase ATPase subunit — —
Shewanella sp. ANA-3 0.32 Shewana3_1981 orotidine 5'-phosphate decarboxylase (RefSeq) 0.23 Shewana3_3156 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) 0.80 71
Shewanella oneidensis MR-1 0.31 SO2398 pyrF orotidine 5`-phosphate decarboxylase (NCBI ptt file) 0.25 SO3555 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI ptt file) 0.85 22
Dickeya dadantii 3937 0.31 DDA3937_RS12525 orotidine-5'-phosphate decarboxylase 0.23 DDA3937_RS15110 5-(carboxyamino)imidazole ribonucleotide synthase 0.88 7
Dinoroseobacter shibae DFL-12 0.31 Dshi_0615 orotidine 5'-phosphate decarboxylase (RefSeq) 0.48 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) 0.80 21
Shewanella amazonensis SB2B 0.31 Sama_1740 orotidine 5'-phosphate decarboxylase (RefSeq) 0.23 Sama_1063 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) 0.54 19
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_01670 orotidine 5'-phosphate decarboxylase 0.36 AO353_09935 phosphoribosylaminoimidazole carboxylase — —
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2056 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.36 PfGW456L13_747 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) — —
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS09110 orotidine-5'-phosphate decarboxylase 0.36 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase — —
Pseudomonas fluorescens SBW25 0.30 PFLU_RS09110 orotidine-5'-phosphate decarboxylase 0.36 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase — —
Dickeya dianthicola 67-19 0.30 HGI48_RS12580 orotidine-5'-phosphate decarboxylase 0.24 HGI48_RS15190 5-(carboxyamino)imidazole ribonucleotide synthase 0.80 3
Pantoea sp. MT58 0.30 IAI47_09275 orotidine-5'-phosphate decarboxylase 0.26 IAI47_14355 5-(carboxyamino)imidazole ribonucleotide synthase 0.95 10
Shewanella loihica PV-4 0.30 Shew_1958 orotidine 5'-phosphate decarboxylase (RefSeq) 0.25 Shew_1249 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_02401 'Orotidine 5'-phosphate decarboxylase' transl_table=11 0.24 OHPLBJKB_03159 N5-carboxyaminoimidazole ribonucleotide synthase low > 73
Erwinia tracheiphila SCR3 0.30 LU632_RS12500 pyrF orotidine-5'-phosphate decarboxylase 0.22 LU632_RS15250 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.77 18
Escherichia coli ECRC62 0.30 BNILDI_18365 pyrF orotidine-5'-phosphate decarboxylase 0.24 BNILDI_22260 purK 5-(carboxyamino)imidazole ribonucleotide synthase — —
Dickeya dianthicola ME23 0.30 DZA65_RS13030 orotidine-5'-phosphate decarboxylase 0.23 DZA65_RS15995 5-(carboxyamino)imidazole ribonucleotide synthase 0.69 47
Escherichia coli ECOR27 0.30 NOLOHH_20215 pyrF orotidine-5'-phosphate decarboxylase 0.24 NOLOHH_00830 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 57
Acinetobacter radioresistens SK82 0.30 MPMX26_01242 Orotidine 5'-phosphate decarboxylase 0.38 MPMX26_03050 N5-carboxyaminoimidazole ribonucleotide synthase low > 36
Escherichia coli BL21 0.30 ECD_01258 orotidine-5'-phosphate decarboxylase 0.24 ECD_00472 N5-carboxyaminoimidazole ribonucleotide synthase 0.63 9
Pseudomonas putida KT2440 0.30 PP_1815 Orotidine 5'-phosphate decarboxylase 0.38 PP_5335 N5-carboxyaminoimidazole ribonucleotide synthase — —
Escherichia coli BW25113 0.30 b1281 pyrF orotidine 5'-phosphate decarboxylase (NCBI) 0.24 b0522 purK phosphoribosylaminoimidazole carboxylase (NCBI) 0.87 11
Pectobacterium carotovorum WPP14 0.30 HER17_RS09390 orotidine-5'-phosphate decarboxylase 0.23 HER17_RS06470 5-(carboxyamino)imidazole ribonucleotide synthase 0.91 49
Escherichia fergusonii Becca 0.29 EFB2_02644 Orotidine 5'-phosphate decarboxylase 0.24 EFB2_03540 N5-carboxyaminoimidazole ribonucleotide synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_1836 orotidine-5'-phosphate decarboxylase 0.36 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase — —
Klebsiella michiganensis M5al 0.29 BWI76_RS11965 orotidine-5'-phosphate decarboxylase 0.24 BWI76_RS07065 5-(carboxyamino)imidazole ribonucleotide synthase 0.73 12
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_1836 orotidine-5'-phosphate decarboxylase 0.36 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase — —
Pseudomonas sp. RS175 0.29 PFR28_03064 'Orotidine 5'-phosphate decarboxylase' transl_table=11 0.38 PFR28_04495 N5-carboxyaminoimidazole ribonucleotide synthase — —
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_514 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.36 Pf1N1B4_2028 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) — —
Pseudomonas simiae WCS417 0.29 PS417_09055 orotidine 5'-phosphate decarboxylase 0.36 PS417_28115 phosphoribosylaminoimidazole carboxylase — —
Enterobacter asburiae PDN3 0.29 EX28DRAFT_0954 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.23 EX28DRAFT_2460 phosphoribosylaminoimidazole carboxylase, PurK protein — —
Rhodospirillum rubrum S1H 0.29 Rru_A3424 Orotidine-5'-phosphate decarboxylase (NCBI) 0.40 Rru_A1051 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) 0.54 51
Escherichia coli ECRC102 0.29 NIAGMN_26720 pyrF orotidine-5'-phosphate decarboxylase 0.24 NIAGMN_05895 purK 5-(carboxyamino)imidazole ribonucleotide synthase — —
Escherichia coli ECRC98 0.29 JDDGAC_05095 pyrF orotidine-5'-phosphate decarboxylase 0.24 JDDGAC_11490 purK 5-(carboxyamino)imidazole ribonucleotide synthase — —
Escherichia coli ECRC101 0.29 MCAODC_15715 pyrF orotidine-5'-phosphate decarboxylase 0.24 MCAODC_27060 purK 5-(carboxyamino)imidazole ribonucleotide synthase — —
Escherichia coli ECRC99 0.29 KEDOAH_26215 pyrF orotidine-5'-phosphate decarboxylase 0.24 KEDOAH_20130 purK 5-(carboxyamino)imidazole ribonucleotide synthase — —
Escherichia coli ECRC101 0.29 OKFHMN_02550 pyrF orotidine-5'-phosphate decarboxylase 0.24 OKFHMN_07840 purK 5-(carboxyamino)imidazole ribonucleotide synthase — —
Azospirillum brasilense Sp245 0.29 AZOBR_RS03135 orotidine 5'-phosphate decarboxylase 0.42 AZOBR_RS06140 phosphoribosylaminoimidazole carboxylase — —
Escherichia coli ECOR38 0.29 HEPCGN_25650 pyrF orotidine-5'-phosphate decarboxylase 0.24 HEPCGN_06480 purK 5-(carboxyamino)imidazole ribonucleotide synthase low > 85
Rahnella sp. WP5 0.29 EX31_RS09855 orotidine-5'-phosphate decarboxylase 0.23 EX31_RS22620 5-(carboxyamino)imidazole ribonucleotide synthase 0.87 64
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_5887 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.38 Pf6N2E2_4081 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) — —
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.5259.1 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.36 Xcc-8004.2012.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_19850 orotidine 5'-phosphate decarboxylase 0.37 AO356_11075 phosphoribosylaminoimidazole carboxylase — —
Pseudomonas sp. S08-1 0.28 OH686_00580 Orotidine 5'-phosphate decarboxylase 0.38 OH686_13380 N5-carboxyaminoimidazole ribonucleotide synthase — —
Pseudomonas stutzeri RCH2 0.28 Psest_1714 orotidine 5'-phosphate decarboxylase, subfamily 1 0.38 Psest_4068 phosphoribosylaminoimidazole carboxylase, PurK protein — —
Enterobacter sp. TBS_079 0.28 MPMX20_02494 Orotidine 5'-phosphate decarboxylase 0.24 MPMX20_01097 N5-carboxyaminoimidazole ribonucleotide synthase 0.79 43
Escherichia coli Nissle 1917 0.28 ECOLIN_RS07730 orotidine-5'-phosphate decarboxylase 0.24 ECOLIN_RS03025 5-(carboxyamino)imidazole ribonucleotide synthase — —
Serratia liquefaciens MT49 0.28 IAI46_13915 orotidine-5'-phosphate decarboxylase 0.22 IAI46_05370 5-(carboxyamino)imidazole ribonucleotide synthase 0.69 21
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF2704 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 0.24 GFF4438 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) low > 78
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_1137 orotidine 5'-phosphate decarboxylase (RefSeq) 0.16 DvMF_2756 purT phosphoribosylglycinamide formyltransferase 2 (RefSeq) low > 51
Magnetospirillum magneticum AMB-1 0.26 AMB_RS20255 orotidine-5'-phosphate decarboxylase 0.38 AMB_RS11140 5-(carboxyamino)imidazole ribonucleotide synthase — —
Azospirillum sp. SherDot2 0.26 MPMX19_02208 Orotidine 5'-phosphate decarboxylase 0.39 MPMX19_01418 N5-carboxyaminoimidazole ribonucleotide synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU0901 pyrF orotidine 5`-phosphate decarboxylase (TIGR) 0.15 DVU0723 purT phosphoribosylglycinamide formyltransferase 2 (TIGR) — —

Not shown: 1 genomes with orthologs for Atu0298 only; 36 genomes with orthologs for Atu3755 only