Conservation of cofitness between Atu0298 and Atu2791 in Agrobacterium fabrum C58

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0298 orotidine 5 1.0 Atu2791 3-isopropylmalate dehydrogenase 0.88 16
Rhizobium sp. OAE497 0.79 ABIE40_RS01345 orotidine-5'-phosphate decarboxylase 0.89 ABIE40_RS19050 3-isopropylmalate dehydrogenase — —
Sinorhizobium meliloti 1021 0.75 SMc00412 orotidine 5'-phosphate decarboxylase 0.90 SMc04405 3-isopropylmalate dehydrogenase 0.86 31
Bosea sp. OAE506 0.53 ABIE41_RS00050 orotidine-5'-phosphate decarboxylase 0.69 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.51 TX73_001750 orotidine-5'-phosphate decarboxylase 0.72 TX73_001175 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 0.44 CCNA_00104 orotidine 5'-phosphate decarboxylase 0.56 CCNA_00193 3-isopropylmalate dehydrogenase 0.90 14
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_00104 orotidine 5'-phosphate decarboxylase 0.56 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS14665 orotidine-5'-phosphate decarboxylase 0.40 A4249_RS09995 3-isopropylmalate dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.36 PGA1_c32450 orotidine 5'-phosphate decarboxylase PyrF 0.57 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.86 10
Alteromonas macleodii MIT1002 0.36 MIT1002_02184 Orotidine 5'-phosphate decarboxylase 0.39 MIT1002_00948 3-isopropylmalate dehydrogenase low > 70
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_2331 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.53 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_09560 orotidine-5'-phosphate decarboxylase 0.43 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_2569 pyrF orotidine 5'-phosphate decarboxylase 0.45 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0234 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.43 Ga0059261_3190 3-isopropylmalate dehydrogenase — —
Marinobacter adhaerens HP15 0.32 HP15_1370 orotidine 5'-phosphate decarboxylase 0.54 HP15_1832 3-isopropylmalate dehydrogenase — —
Shewanella sp. ANA-3 0.32 Shewana3_1981 orotidine 5'-phosphate decarboxylase (RefSeq) 0.39 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.82 50
Shewanella oneidensis MR-1 0.31 SO2398 pyrF orotidine 5`-phosphate decarboxylase (NCBI ptt file) 0.39 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.81 36
Dickeya dadantii 3937 0.31 DDA3937_RS12525 orotidine-5'-phosphate decarboxylase 0.42 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.72 49
Dinoroseobacter shibae DFL-12 0.31 Dshi_0615 orotidine 5'-phosphate decarboxylase (RefSeq) 0.61 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —
Shewanella amazonensis SB2B 0.31 Sama_1740 orotidine 5'-phosphate decarboxylase (RefSeq) 0.38 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) low > 62
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_01670 orotidine 5'-phosphate decarboxylase 0.55 AO353_20635 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2056 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.54 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS09110 orotidine-5'-phosphate decarboxylase 0.57 PFLU_RS20565 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.30 PFLU_RS09110 orotidine-5'-phosphate decarboxylase 0.57 PFLU_RS20565 3-isopropylmalate dehydrogenase — —
Pantoea sp. MT58 0.30 IAI47_09275 orotidine-5'-phosphate decarboxylase 0.41 IAI47_16005 3-isopropylmalate dehydrogenase 0.76 43
Dickeya dianthicola 67-19 0.30 HGI48_RS12580 orotidine-5'-phosphate decarboxylase 0.43 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.71 16
Shewanella loihica PV-4 0.30 Shew_1958 orotidine 5'-phosphate decarboxylase (RefSeq) 0.38 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_02401 'Orotidine 5'-phosphate decarboxylase' transl_table=11 0.44 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli ECOR27 0.30 NOLOHH_20215 pyrF orotidine-5'-phosphate decarboxylase 0.44 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Dickeya dianthicola ME23 0.30 DZA65_RS13030 orotidine-5'-phosphate decarboxylase 0.43 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.86 6
Erwinia tracheiphila SCR3 0.30 LU632_RS12500 pyrF orotidine-5'-phosphate decarboxylase 0.41 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.75 27
Escherichia coli ECRC62 0.30 BNILDI_18365 pyrF orotidine-5'-phosphate decarboxylase 0.44 BNILDI_08545 leuA 2-isopropylmalate synthase — —
Acinetobacter radioresistens SK82 0.30 MPMX26_01242 Orotidine 5'-phosphate decarboxylase 0.54 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Pseudomonas putida KT2440 0.30 PP_1815 Orotidine 5'-phosphate decarboxylase 0.55 PP_1988 3-isopropylmalate dehydrogenase — —
Escherichia coli BW25113 0.30 b1281 pyrF orotidine 5'-phosphate decarboxylase (NCBI) 0.44 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.74 55
Pectobacterium carotovorum WPP14 0.30 HER17_RS09390 orotidine-5'-phosphate decarboxylase 0.43 HER17_RS03080 3-isopropylmalate dehydrogenase 0.95 19
Escherichia coli BL21 0.30 ECD_01258 orotidine-5'-phosphate decarboxylase 0.44 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 60
Escherichia fergusonii Becca 0.29 EFB2_02644 Orotidine 5'-phosphate decarboxylase 0.44 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Pseudomonas sp. RS175 0.29 PFR28_03064 'Orotidine 5'-phosphate decarboxylase' transl_table=11 0.56 PFR28_02821 3-isopropylmalate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_1836 orotidine-5'-phosphate decarboxylase 0.55 Psyr_1985 3-isopropylmalate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_1836 orotidine-5'-phosphate decarboxylase 0.55 Psyr_1985 3-isopropylmalate dehydrogenase — —
Klebsiella michiganensis M5al 0.29 BWI76_RS11965 orotidine-5'-phosphate decarboxylase 0.44 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.68 49
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_514 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.56 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Rhodospirillum rubrum S1H 0.29 Rru_A3424 Orotidine-5'-phosphate decarboxylase (NCBI) 0.57 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.84 5
Pseudomonas simiae WCS417 0.29 PS417_09055 orotidine 5'-phosphate decarboxylase 0.57 PS417_18585 3-isopropylmalate dehydrogenase — —
Enterobacter asburiae PDN3 0.29 EX28DRAFT_0954 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.44 EX28DRAFT_3669 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC102 0.29 NIAGMN_26720 pyrF orotidine-5'-phosphate decarboxylase 0.44 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Azospirillum brasilense Sp245 0.29 AZOBR_RS03135 orotidine 5'-phosphate decarboxylase 0.63 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.41 8
Escherichia coli ECRC101 0.29 MCAODC_15715 pyrF orotidine-5'-phosphate decarboxylase 0.44 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.29 OKFHMN_02550 pyrF orotidine-5'-phosphate decarboxylase 0.44 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC99 0.29 KEDOAH_26215 pyrF orotidine-5'-phosphate decarboxylase 0.44 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECOR38 0.29 HEPCGN_25650 pyrF orotidine-5'-phosphate decarboxylase 0.44 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Escherichia coli ECRC98 0.29 JDDGAC_05095 pyrF orotidine-5'-phosphate decarboxylase 0.44 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase — —
Rahnella sp. WP5 0.29 EX31_RS09855 orotidine-5'-phosphate decarboxylase 0.42 EX31_RS03685 3-isopropylmalate dehydrogenase 0.94 5
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_5887 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.56 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_19850 orotidine 5'-phosphate decarboxylase 0.56 AO356_21415 3-isopropylmalate dehydrogenase — —
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.5259.1 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.52 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Enterobacter sp. TBS_079 0.28 MPMX20_02494 Orotidine 5'-phosphate decarboxylase 0.44 MPMX20_00768 3-isopropylmalate dehydrogenase 0.73 64
Pseudomonas sp. S08-1 0.28 OH686_00580 Orotidine 5'-phosphate decarboxylase 0.53 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.28 Psest_1714 orotidine 5'-phosphate decarboxylase, subfamily 1 0.54 Psest_2589 3-isopropylmalate dehydrogenase — —
Escherichia coli Nissle 1917 0.28 ECOLIN_RS07730 orotidine-5'-phosphate decarboxylase 0.44 ECOLIN_RS00395 3-isopropylmalate dehydrogenase — —
Serratia liquefaciens MT49 0.28 IAI46_13915 orotidine-5'-phosphate decarboxylase 0.43 IAI46_03350 3-isopropylmalate dehydrogenase 0.56 67
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF2704 'Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)' transl_table=11 0.44 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_1137 orotidine 5'-phosphate decarboxylase (RefSeq) 0.46 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.63 44
Magnetospirillum magneticum AMB-1 0.26 AMB_RS20255 orotidine-5'-phosphate decarboxylase 0.55 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Azospirillum sp. SherDot2 0.26 MPMX19_02208 Orotidine 5'-phosphate decarboxylase 0.64 MPMX19_00607 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU0901 pyrF orotidine 5`-phosphate decarboxylase (TIGR) 0.45 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) — —

Not shown: 1 genomes with orthologs for Atu0298 only; 32 genomes with orthologs for Atu2791 only