Conservation of cofitness between Atu0298 and Atu2264 in Agrobacterium fabrum C58

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0298 orotidine 5 1.0 Atu2264 2-isopropylmalate synthase 0.88 14
Rhizobium sp. OAE497 0.79 ABIE40_RS01345 orotidine-5'-phosphate decarboxylase 0.87 ABIE40_RS13330 2-isopropylmalate synthase — —
Sinorhizobium meliloti 1021 0.75 SMc00412 orotidine 5'-phosphate decarboxylase 0.88 SMc02717 2-isopropylmalate synthase 0.86 37
Bosea sp. OAE506 0.53 ABIE41_RS00050 orotidine-5'-phosphate decarboxylase 0.11 ABIE41_RS13000 2-isopropylmalate synthase low > 77
Rhodopseudomonas palustris CGA009 0.51 TX73_001750 orotidine-5'-phosphate decarboxylase 0.50 TX73_024250 2-isopropylmalate synthase — —
Caulobacter crescentus NA1000 0.44 CCNA_00104 orotidine 5'-phosphate decarboxylase 0.10 CCNA_01610 2-isopropylmalate synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_00104 orotidine 5'-phosphate decarboxylase 0.10 CCNA_01610 2-isopropylmalate synthase low > 67
Phaeobacter inhibens DSM 17395 0.36 PGA1_c32450 orotidine 5'-phosphate decarboxylase PyrF 0.11 PGA1_c26470 2-isopropylmalate synthase LeuA 0.86 11
Alteromonas macleodii MIT1002 0.36 MIT1002_02184 Orotidine 5'-phosphate decarboxylase 0.09 MIT1002_00949 2-isopropylmalate synthase low > 70
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_09560 orotidine-5'-phosphate decarboxylase 0.10 CSW01_12595 2-isopropylmalate synthase low > 62
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_2569 pyrF orotidine 5'-phosphate decarboxylase 0.09 Synpcc7942_1410 leuA 2-isopropylmalate synthase — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0234 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.51 Ga0059261_4031 2-isopropylmalate synthase, yeast type — —
Marinobacter adhaerens HP15 0.32 HP15_1370 orotidine 5'-phosphate decarboxylase 0.48 HP15_2055 2-isopropylmalate synthase — —
Shewanella sp. ANA-3 0.32 Shewana3_1981 orotidine 5'-phosphate decarboxylase (RefSeq) 0.09 Shewana3_3761 2-isopropylmalate synthase (RefSeq) 0.84 31
Shewanella oneidensis MR-1 0.31 SO2398 pyrF orotidine 5`-phosphate decarboxylase (NCBI ptt file) 0.09 SO4236 leuA 2-isopropylmalate synthase (NCBI ptt file) 0.81 33
Shewanella amazonensis SB2B 0.31 Sama_1740 orotidine 5'-phosphate decarboxylase (RefSeq) 0.09 Sama_0335 2-isopropylmalate synthase (RefSeq) 0.49 48
Dickeya dadantii 3937 0.31 DDA3937_RS12525 orotidine-5'-phosphate decarboxylase 0.45 DDA3937_RS02895 2-isopropylmalate synthase low > 74
Dinoroseobacter shibae DFL-12 0.31 Dshi_0615 orotidine 5'-phosphate decarboxylase (RefSeq) 0.12 Dshi_0596 2-isopropylmalate synthase (RefSeq) 0.85 10
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_01670 orotidine 5'-phosphate decarboxylase 0.53 AO353_15925 2-isopropylmalate synthase — —
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2056 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.52 PfGW456L13_4854 2-isopropylmalate synthase (EC 2.3.3.13) — —
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS09110 orotidine-5'-phosphate decarboxylase 0.53 PFLU_RS24765 2-isopropylmalate synthase — —
Pseudomonas fluorescens SBW25 0.30 PFLU_RS09110 orotidine-5'-phosphate decarboxylase 0.53 PFLU_RS24765 2-isopropylmalate synthase — —
Pantoea sp. MT58 0.30 IAI47_09275 orotidine-5'-phosphate decarboxylase 0.44 IAI47_10235 2-isopropylmalate synthase low > 76
Dickeya dianthicola 67-19 0.30 HGI48_RS12580 orotidine-5'-phosphate decarboxylase 0.09 HGI48_RS18055 2-isopropylmalate synthase 0.73 14
Shewanella loihica PV-4 0.30 Shew_1958 orotidine 5'-phosphate decarboxylase (RefSeq) 0.09 Shew_3472 2-isopropylmalate synthase (RefSeq) — —
Escherichia coli ECRC62 0.30 BNILDI_18365 pyrF orotidine-5'-phosphate decarboxylase 0.09 BNILDI_08550 2-isopropylmalate synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_02401 'Orotidine 5'-phosphate decarboxylase' transl_table=11 0.09 OHPLBJKB_03583 2-isopropylmalate synthase low > 73
Erwinia tracheiphila SCR3 0.30 LU632_RS12500 pyrF orotidine-5'-phosphate decarboxylase 0.11 LU632_RS02880 leuA 2-isopropylmalate synthase 0.68 52
Dickeya dianthicola ME23 0.30 DZA65_RS13030 orotidine-5'-phosphate decarboxylase 0.10 DZA65_RS19200 2-isopropylmalate synthase 0.88 5
Escherichia coli ECOR27 0.30 NOLOHH_20215 pyrF orotidine-5'-phosphate decarboxylase 0.09 NOLOHH_03060 2-isopropylmalate synthase low > 57
Acinetobacter radioresistens SK82 0.30 MPMX26_01242 Orotidine 5'-phosphate decarboxylase 0.50 MPMX26_00404 2-isopropylmalate synthase low > 36
Escherichia coli BL21 0.30 ECD_01258 orotidine-5'-phosphate decarboxylase 0.09 ECD_00076 2-isopropylmalate synthase low > 60
Pseudomonas putida KT2440 0.30 PP_1815 Orotidine 5'-phosphate decarboxylase 0.54 PP_1025 2-isopropylmalate synthase — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS09390 orotidine-5'-phosphate decarboxylase 0.10 HER17_RS03085 2-isopropylmalate synthase 0.95 23
Escherichia coli BW25113 0.30 b1281 pyrF orotidine 5'-phosphate decarboxylase (NCBI) 0.09 b0074 leuA 2-isopropylmalate synthase (NCBI) 0.74 58
Klebsiella michiganensis M5al 0.29 BWI76_RS11965 orotidine-5'-phosphate decarboxylase 0.46 BWI76_RS22105 2-isopropylmalate synthase low > 92
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_1836 orotidine-5'-phosphate decarboxylase 0.53 Psyr_1257 2-isopropylmalate synthase — —
Escherichia fergusonii Becca 0.29 EFB2_02644 Orotidine 5'-phosphate decarboxylase 0.09 EFB2_03971 2-isopropylmalate synthase low > 86
Pseudomonas sp. RS175 0.29 PFR28_03064 'Orotidine 5'-phosphate decarboxylase' transl_table=11 0.53 PFR28_00305 2-isopropylmalate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_1836 orotidine-5'-phosphate decarboxylase 0.53 Psyr_1257 2-isopropylmalate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_514 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.53 Pf1N1B4_847 2-isopropylmalate synthase (EC 2.3.3.13) — —
Rhodospirillum rubrum S1H 0.29 Rru_A3424 Orotidine-5'-phosphate decarboxylase (NCBI) 0.59 Rru_A1928 Yeast 2-isopropylmalate synthase (NCBI) 0.78 16
Pseudomonas simiae WCS417 0.29 PS417_09055 orotidine 5'-phosphate decarboxylase 0.53 PS417_23110 2-isopropylmalate synthase — —
Enterobacter asburiae PDN3 0.29 EX28DRAFT_0954 orotidine-5'-phosphate decarboxylase (EC 4.1.1.23) 0.46 EX28DRAFT_2770 2-isopropylmalate synthase, yeast type — —
Escherichia coli ECRC101 0.29 MCAODC_15715 pyrF orotidine-5'-phosphate decarboxylase 0.09 MCAODC_01230 2-isopropylmalate synthase — —
Escherichia coli ECOR38 0.29 HEPCGN_25650 pyrF orotidine-5'-phosphate decarboxylase 0.09 HEPCGN_08695 2-isopropylmalate synthase low > 85
Escherichia coli ECRC102 0.29 NIAGMN_26720 pyrF orotidine-5'-phosphate decarboxylase 0.09 NIAGMN_08565 2-isopropylmalate synthase — —
Escherichia coli ECRC98 0.29 JDDGAC_05095 pyrF orotidine-5'-phosphate decarboxylase 0.09 JDDGAC_14310 2-isopropylmalate synthase — —
Escherichia coli ECRC101 0.29 OKFHMN_02550 pyrF orotidine-5'-phosphate decarboxylase 0.09 OKFHMN_10715 2-isopropylmalate synthase — —
Escherichia coli ECRC99 0.29 KEDOAH_26215 pyrF orotidine-5'-phosphate decarboxylase 0.09 KEDOAH_17440 2-isopropylmalate synthase — —
Azospirillum brasilense Sp245 0.29 AZOBR_RS03135 orotidine 5'-phosphate decarboxylase 0.58 AZOBR_RS12155 2-isopropylmalate synthase low > 97
Rahnella sp. WP5 0.29 EX31_RS09855 orotidine-5'-phosphate decarboxylase 0.50 EX31_RS24130 2-isopropylmalate synthase low > 89
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_5887 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.53 Pf6N2E2_3170 2-isopropylmalate synthase (EC 2.3.3.13) — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_19850 orotidine 5'-phosphate decarboxylase 0.53 AO356_06550 2-isopropylmalate synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.5259.1 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) 0.11 Xcc-8004.1056.1 2-isopropylmalate synthase (EC 2.3.3.13) — —
Pseudomonas sp. S08-1 0.28 OH686_00580 Orotidine 5'-phosphate decarboxylase 0.52 OH686_17570 2-isopropylmalate synthase low > 80
Pseudomonas stutzeri RCH2 0.28 Psest_1714 orotidine 5'-phosphate decarboxylase, subfamily 1 0.55 Psest_1277 2-isopropylmalate synthase, yeast type — —
Enterobacter sp. TBS_079 0.28 MPMX20_02494 Orotidine 5'-phosphate decarboxylase 0.46 MPMX20_03565 2-isopropylmalate synthase low > 85
Escherichia coli Nissle 1917 0.28 ECOLIN_RS07730 orotidine-5'-phosphate decarboxylase 0.09 ECOLIN_RS00400 2-isopropylmalate synthase — —
Serratia liquefaciens MT49 0.28 IAI46_13915 orotidine-5'-phosphate decarboxylase 0.49 IAI46_09630 2-isopropylmalate synthase low > 86
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_1137 orotidine 5'-phosphate decarboxylase (RefSeq) 0.13 DvMF_1791 2-isopropylmalate synthase (RefSeq) low > 51
Magnetospirillum magneticum AMB-1 0.26 AMB_RS20255 orotidine-5'-phosphate decarboxylase 0.55 AMB_RS17550 2-isopropylmalate synthase — —
Azospirillum sp. SherDot2 0.26 MPMX19_02208 Orotidine 5'-phosphate decarboxylase 0.59 MPMX19_01822 2-isopropylmalate synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU0901 pyrF orotidine 5`-phosphate decarboxylase (TIGR) 0.12 DVU2981 leuA 2-isopropylmalate synthase (TIGR) — —

Not shown: 4 genomes with orthologs for Atu0298 only; 31 genomes with orthologs for Atu2264 only