Conservation of cofitness between Atu0817 and Atu1589 in Agrobacterium fabrum C58

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0817 sulfate adenylate transferase, subunit 2 1.0 Atu1589 aminotransferase, class I 0.52 19
Sinorhizobium meliloti 1021 0.86 SMc00091 sulfate adenylyltransferase 0.94 SMc00294 aminotransferase 0.90 27
Rhizobium sp. OAE497 0.85 ABIE40_RS04470 sulfate adenylyltransferase subunit CysD 0.94 ABIE40_RS08645 LL-diaminopimelate aminotransferase 0.87 5
Dickeya dianthicola ME23 0.67 DZA65_RS18070 sulfate adenylyltransferase subunit CysD 0.49 DZA65_RS15705 alanine transaminase low > 75
Dickeya dianthicola 67-19 0.67 HGI48_RS16995 sulfate adenylyltransferase subunit CysD 0.50 HGI48_RS14755 alanine transaminase low > 71
Dickeya dadantii 3937 0.67 DDA3937_RS16925 sulfate adenylyltransferase subunit CysD 0.50 DDA3937_RS14825 alanine transaminase low > 74
Enterobacter asburiae PDN3 0.67 EX28DRAFT_2848 sulfate adenylyltransferase, small subunit 0.50 EX28DRAFT_0240 Aspartate/tyrosine/aromatic aminotransferase low > 76
Pseudomonas sp. S08-1 0.67 OH686_08450 Sulfate adenylyltransferase subunit 2 0.49 OH686_04000 Glutamate-pyruvate aminotransferase AlaC
Enterobacter sp. TBS_079 0.67 MPMX20_03638 Sulfate adenylyltransferase subunit 2 0.50 MPMX20_03277 Glutamate-pyruvate aminotransferase AlaC low > 85
Klebsiella michiganensis M5al 0.66 BWI76_RS22700 sulfate adenylyltransferase subunit 2 0.50 BWI76_RS20495 alanine transaminase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00981 Sulfate adenylyltransferase subunit 2 0.49 OHPLBJKB_01342 Glutamate-pyruvate aminotransferase AlaC low > 73
Rahnella sp. WP5 0.66 EX31_RS07880 sulfate adenylyltransferase subunit CysD 0.49 EX31_RS20015 alanine transaminase low > 89
Pectobacterium carotovorum WPP14 0.66 HER17_RS04285 sulfate adenylyltransferase subunit CysD 0.50 HER17_RS06655 alanine transaminase low > 75
Acinetobacter radioresistens SK82 0.66 MPMX26_02326 Sulfate adenylyltransferase subunit 2 0.19 MPMX26_01868 LL-diaminopimelate aminotransferase low > 36
Escherichia coli BL21 0.66 ECD_02602 sulfate adenylyltransferase, subunit 2 0.49 ECD_02289 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 60
Escherichia coli ECOR38 0.66 HEPCGN_19620 cysD sulfate adenylyltransferase subunit CysD 0.49 HEPCGN_21580 alaC alanine transaminase low > 85
Escherichia coli ECRC101 0.66 MCAODC_10965 cysD sulfate adenylyltransferase subunit CysD 0.49 MCAODC_12900 alaC alanine transaminase
Escherichia coli ECRC99 0.66 KEDOAH_07700 cysD sulfate adenylyltransferase subunit CysD 0.49 KEDOAH_05850 alaC alanine transaminase
Escherichia coli ECRC102 0.66 NIAGMN_18210 cysD sulfate adenylyltransferase subunit CysD 0.49 NIAGMN_20145 alaC alanine transaminase
Escherichia coli BW25113 0.66 b2752 cysD sulfate adenylyltransferase subunit 2 (NCBI) 0.49 b2379 yfdZ hypothetical protein (NCBI) low > 76
Escherichia coli ECRC101 0.66 OKFHMN_20440 cysD sulfate adenylyltransferase subunit CysD 0.49 OKFHMN_22370 alaC alanine transaminase
Escherichia coli ECRC98 0.66 JDDGAC_24105 cysD sulfate adenylyltransferase subunit CysD 0.49 JDDGAC_26335 alaC alanine transaminase
Escherichia coli ECOR27 0.66 NOLOHH_12255 cysD sulfate adenylyltransferase subunit CysD 0.49 NOLOHH_14055 alaC alanine transaminase low > 57
Escherichia coli ECRC62 0.66 BNILDI_10805 cysD sulfate adenylyltransferase subunit CysD 0.49 BNILDI_12910 alaC alanine transaminase
Escherichia fergusonii Becca 0.66 EFB2_01158 Sulfate adenylyltransferase subunit 2 0.49 EFB2_01495 Glutamate-pyruvate aminotransferase AlaC low > 86
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_4128 sulfate adenylyltransferase subunit 2 0.50 Psyr_0468 Aminotransferase, class I and II low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_4128 sulfate adenylyltransferase subunit 2 0.50 Psyr_0468 Aminotransferase, class I and II low > 86
Serratia liquefaciens MT49 0.66 IAI46_03715 sulfate adenylyltransferase subunit CysD 0.50 IAI46_18180 alanine transaminase low > 86
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_05080 sulfate adenylyltransferase 0.50 AO353_03235 glutamate-pyruvate aminotransferase low > 101
Pantoea sp. MT58 0.66 IAI47_04180 sulfate adenylyltransferase subunit CysD 0.51 IAI47_05575 alanine transaminase low > 76
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_4993 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.50 PfGW456L13_1928 Uncharacterized PLP-dependent aminotransferase YfdZ low > 87
Escherichia coli Nissle 1917 0.66 ECOLIN_RS15385 sulfate adenylyltransferase subunit CysD 0.49 ECOLIN_RS13690 alanine transaminase low > 52
Pseudomonas putida KT2440 0.66 PP_1303 Sulfate adenylyltransferase subunit 2 0.49 PP_0817 aminotransferase low > 96
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_5257 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.50 Pf6N2E2_2862 Uncharacterized PLP-dependent aminotransferase YfdZ low > 103
Pseudomonas simiae WCS417 0.65 PS417_03715 sulfate adenylyltransferase subunit 2 0.50 PS417_21975 glutamate-pyruvate aminotransferase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF4800 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.50 GFF1970 Uncharacterized PLP-dependent aminotransferase YfdZ low > 78
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_16665 sulfate adenylyltransferase 0.50 AO356_05050 glutamate-pyruvate aminotransferase low > 104
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS03765 sulfate adenylyltransferase subunit CysD 0.49 PFLU_RS23580 alanine transaminase low > 109
Pseudomonas fluorescens SBW25 0.65 PFLU_RS03765 sulfate adenylyltransferase subunit CysD 0.49 PFLU_RS23580 alanine transaminase low > 109
Pseudomonas sp. RS175 0.65 PFR28_00193 Sulfate adenylyltransferase subunit 2 0.50 PFR28_00596 Glutamate-pyruvate aminotransferase AlaC low > 88
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_1058 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.50 Pf1N1B4_555 Uncharacterized PLP-dependent aminotransferase YfdZ
Azospirillum sp. SherDot2 0.64 MPMX19_06719 Sulfate adenylyltransferase subunit 2 0.65 MPMX19_00804 Glutamate-pyruvate aminotransferase AlaC
Pseudomonas stutzeri RCH2 0.63 Psest_3294 sulfate adenylyltransferase, small subunit 0.15 Psest_1470 succinyldiaminopimelate transaminase
Caulobacter crescentus NA1000 0.62 CCNA_01550 sulfate adenylyltransferase subunit 2 0.66 CCNA_01446 LL-diaminopimelate aminotransferase 0.78 63
Caulobacter crescentus NA1000 Δfur 0.62 CCNA_01550 sulfate adenylyltransferase subunit 2 0.66 CCNA_01446 LL-diaminopimelate aminotransferase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS15305 sulfate adenylyltransferase subunit CysD 0.61 A4249_RS02425 LL-diaminopimelate aminotransferase 0.99 21
Rhodospirillum rubrum S1H 0.62 Rru_A2289 Sulfate adenylyltransferase, small subunit (NCBI) 0.66 Rru_A2411 Aminotransferase, class I and II (NCBI)
Bacteroides ovatus ATCC 8483 0.61 BACOVA_01768 putative sulfate adenylyltransferase subunit 2 0.27 BACOVA_01161 aminotransferase, class I/II low > 94
Bacteroides thetaiotaomicron VPI-5482 0.61 BT0414 sulfate adenylyltransferase subunit 2 (NCBI ptt file) 0.26 BT3935 aminotransferase (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.61 HMPREF1078_RS01705 sulfate adenylyltransferase subunit CysD 0.29 HMPREF1078_RS01130 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 61
Bacteroides stercoris CC31F 0.61 HMPREF1181_RS04305 sulfate adenylyltransferase subunit CysD 0.28 HMPREF1181_RS06565 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 56
Phocaeicola vulgatus CL09T03C04 0.60 HMPREF1058_RS02945 sulfate adenylyltransferase subunit CysD 0.30 HMPREF1058_RS14790 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 67
Phocaeicola dorei CL03T12C01 0.60 ABI39_RS02260 sulfate adenylyltransferase subunit CysD 0.30 ABI39_RS10505 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 72
Azospirillum brasilense Sp245 0.59 AZOBR_RS33775 sulfate adenylyltransferase subunit 2 0.66 AZOBR_RS07830 aminotransferase
Bosea sp. OAE506 0.59 ABIE41_RS15370 sulfate adenylyltransferase subunit CysD 0.77 ABIE41_RS19175 LL-diaminopimelate aminotransferase low > 77
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_4076 sulfate adenylyltransferase, small subunit 0.62 Ga0059261_1288 Aspartate/tyrosine/aromatic aminotransferase low > 68
Mycobacterium tuberculosis H37Rv 0.43 Rv1285 Probable sulfate adenylyltransferase subunit 2 CysD 0.15 Rv1178 Probable aminotransferase
Castellaniella sp019104865 MT123 0.41 ABCV34_RS14115 sulfate adenylyltransferase subunit CysD 0.52 ABCV34_RS02290 alanine transaminase low > 48
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_0983 sulfate adenylyltransferase, small subunit 0.26 Echvi_0124 Aspartate/tyrosine/aromatic aminotransferase
Dechlorosoma suillum PS 0.40 Dsui_1983 sulfate adenylyltransferase, small subunit 0.51 Dsui_2909 aspartate/tyrosine/aromatic aminotransferase
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS15565 sulfate adenylyltransferase subunit 2 0.52 HSERO_RS12800 aspartate aminotransferase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF4290 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.18 GFF4553 N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17) low > 90
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_02545 sulfate adenylyltransferase small subunit 0.19 CA264_01550 aminotransferase low > 74
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS00195 sulfate adenylyltransferase subunit CysD 0.19 ABZR87_RS11770 succinyldiaminopimelate transaminase 0.53 57
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS04585 sulfate adenylyltransferase subunit CysD 0.18 RALBFv3_RS00320 succinyldiaminopimelate transaminase
Ralstonia solanacearum UW163 0.37 UW163_RS09085 sulfate adenylyltransferase subunit CysD 0.18 UW163_RS13650 succinyldiaminopimelate transaminase
Ralstonia solanacearum GMI1000 0.36 RS_RS12155 sulfate adenylyltransferase subunit CysD 0.18 RS_RS06990 succinyldiaminopimelate transaminase 0.52 23
Acidovorax sp. GW101-3H11 0.36 Ac3H11_574 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.51 Ac3H11_3720 Uncharacterized PLP-dependent aminotransferase YfdZ low > 79
Ralstonia solanacearum PSI07 0.36 RPSI07_RS12790 sulfate adenylyltransferase subunit CysD 0.18 RPSI07_RS17155 succinyldiaminopimelate transaminase low > 81
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS16255 sulfate adenylyltransferase 0.50 RR42_RS28540 glutamate--pyruvate aminotransferase low > 128
Variovorax sp. OAS795 0.36 ABID97_RS15365 sulfate adenylyltransferase subunit CysD 0.16 ABID97_RS16630 succinyldiaminopimelate transaminase low > 91
Variovorax sp. SCN45 0.36 GFF1203 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.16 GFF254 N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2 low > 127
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS25240 sulfate adenylyltransferase subunit CysD 0.17 QEN71_RS06370 succinyldiaminopimelate transaminase 0.71 65
Magnetospirillum magneticum AMB-1 0.34 AMB_RS11195 sulfate adenylyltransferase subunit 2 0.65 AMB_RS18860 pyridoxal phosphate-dependent aminotransferase low > 64
Rhodopseudomonas palustris CGA009 0.31 TX73_003885 sulfate adenylyltransferase subunit 2 0.74 TX73_012935 LL-diaminopimelate aminotransferase low > 86

Not shown: 19 genomes with orthologs for Atu0817 only; 7 genomes with orthologs for Atu1589 only