Conservation of cofitness between Atu2608 and Atu1303 in Agrobacterium fabrum C58

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2608 N-acetylglucosamine-6-phosphate deacetylase 1.0 Atu1303 exoribonuclease 0.26 15
Sinorhizobium meliloti 1021 0.62 SMc02878 N-acetylglucosamine-6-phosphate deacetylase 0.76 SMc01365 exoribonuclease II protein — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c27880 N-acetylglucosamine-6-phosphate deacetylase NagA 0.43 PGA1_c36430 putative ribonuclease R — —
Rhizobium sp. OAE497 0.43 ABIE40_RS18570 N-acetylglucosamine-6-phosphate deacetylase 0.78 ABIE40_RS07350 ribonuclease R low > 107
Azospirillum sp. SherDot2 0.39 MPMX19_03613 N-acetylglucosamine-6-phosphate deacetylase 0.38 MPMX19_01812 Ribonuclease R low > 112
Shewanella oneidensis MR-1 0.38 SO3505 nagA N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.24 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.38 ABIE51_RS01635 N-acetylglucosamine-6-phosphate deacetylase 0.24 ABIE51_RS07475 ribonuclease R low > 62
Shewanella sp. ANA-3 0.37 Shewana3_3112 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.24 Shewana3_0697 RNAse R (RefSeq) low > 73
Shewanella loihica PV-4 0.37 Shew_1117 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.23 Shew_3289 ribonuclease R (RefSeq) low > 60
Azospirillum brasilense Sp245 0.37 AZOBR_RS11675 N-acetylglucosamine 6-phosphate deacetylase 0.39 AZOBR_RS16165 ribonuclease R — —
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_14345 nagA N-acetylglucosamine-6-phosphate deacetylase 0.22 OKGIIK_06755 rnr ribonuclease R low > 52
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS16045 N-acetylglucosamine-6-phosphate deacetylase 0.22 ABZR86_RS08270 ribonuclease R low > 74
Shewanella amazonensis SB2B 0.34 Sama_0946 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.22 Sama_3067 exoribonuclease II (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.34 LRK55_RS07585 N-acetylglucosamine-6-phosphate deacetylase 0.23 LRK55_RS00235 ribonuclease R — —
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS07855 N-acetylglucosamine-6-phosphate deacetylase 0.23 LRK54_RS00495 ribonuclease R — —
Caulobacter crescentus NA1000 0.34 CCNA_00452 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.42 CCNA_02537 ribonuclease R low > 66
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_00452 N-acetylglucosamine-6-phosphate deacetylase 0.42 CCNA_02537 ribonuclease R low > 67
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_1645 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.35 Ga0059261_3266 ribonuclease R low > 68
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.957.1 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) 0.24 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R low > 74
Pantoea sp. MT58 0.31 IAI47_13885 N-acetylglucosamine-6-phosphate deacetylase 0.23 IAI47_02625 ribonuclease R low > 76
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_05070 N-acetylglucosamine-6-phosphate deacetylase 0.24 CSW01_13155 ribonuclease R low > 62
Alteromonas macleodii MIT1002 0.31 MIT1002_00910 N-acetylglucosamine-6-phosphate deacetylase 0.21 MIT1002_03606 Ribonuclease R low > 70
Escherichia coli ECRC101 0.30 OKFHMN_07165 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 OKFHMN_12220 rnr ribonuclease R — —
Escherichia coli BL21 0.30 ECD_00634 N-acetylglucosamine-6-phosphate deacetylase 0.24 ECD_04046 exoribonuclease R, RNase R low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_03038 N-acetylglucosamine-6-phosphate deacetylase 0.23 OHPLBJKB_03863 Ribonuclease R 0.80 18
Escherichia coli ECRC98 0.30 JDDGAC_10815 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 JDDGAC_15860 rnr ribonuclease R — —
Escherichia coli ECOR38 0.30 HEPCGN_01065 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 HEPCGN_10450 rnr ribonuclease R low > 85
Escherichia coli Nissle 1917 0.30 ECOLIN_RS03615 N-acetylglucosamine-6-phosphate deacetylase 0.24 ECOLIN_RS24265 ribonuclease R low > 52
Escherichia coli ECRC102 0.30 NIAGMN_05220 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC99 0.30 KEDOAH_20805 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECRC62 0.30 BNILDI_21550 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 BNILDI_07005 rnr ribonuclease R — —
Escherichia coli ECRC101 0.30 MCAODC_26380 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 MCAODC_02735 rnr ribonuclease R — —
Escherichia coli BW25113 0.30 b0677 nagA N-acetylglucosamine-6-phosphate deacetylase (NCBI) 0.24 b4179 vacB putative enzyme (VIMSS) low > 76
Escherichia coli ECOR27 0.30 NOLOHH_23545 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 NOLOHH_04485 rnr ribonuclease R low > 57
Escherichia fergusonii Becca 0.29 EFB2_03426 N-acetylglucosamine-6-phosphate deacetylase 0.23 EFB2_04356 Ribonuclease R low > 86
Dickeya dadantii 3937 0.29 DDA3937_RS06305 N-acetylglucosamine-6-phosphate deacetylase 0.24 DDA3937_RS17260 ribonuclease R low > 74
Klebsiella michiganensis M5al 0.29 BWI76_RS08210 N-acetylglucosamine-6-phosphate deacetylase 0.23 BWI76_RS02575 exoribonuclease R low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF4585 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) 0.23 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.89 3
Dickeya dianthicola ME23 0.28 DZA65_RS06695 N-acetylglucosamine-6-phosphate deacetylase 0.24 DZA65_RS18405 ribonuclease R low > 75
Dickeya dianthicola 67-19 0.28 HGI48_RS06350 N-acetylglucosamine-6-phosphate deacetylase 0.24 HGI48_RS17315 ribonuclease R low > 71
Enterobacter asburiae PDN3 0.28 EX28DRAFT_2298 N-acetylglucosamine-6-phosphate deacetylase 0.23 EX28DRAFT_3376 ribonuclease R low > 76
Rahnella sp. WP5 0.28 EX31_RS23260 N-acetylglucosamine-6-phosphate deacetylase 0.24 EX31_RS08785 ribonuclease R low > 89
Pectobacterium carotovorum WPP14 0.28 HER17_RS15110 N-acetylglucosamine-6-phosphate deacetylase 0.23 HER17_RS03835 ribonuclease R low > 75
Erwinia tracheiphila SCR3 0.27 LU632_RS16250 nagA N-acetylglucosamine-6-phosphate deacetylase 0.23 LU632_RS21750 rnr ribonuclease R low > 74
Serratia liquefaciens MT49 0.27 IAI46_06085 N-acetylglucosamine-6-phosphate deacetylase 0.23 IAI46_01660 ribonuclease R low > 86
Enterobacter sp. TBS_079 0.27 MPMX20_01323 N-acetylglucosamine-6-phosphate deacetylase 0.23 MPMX20_00460 Ribonuclease R low > 85
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_04450 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.25 AO353_13200 exoribonuclease R low > 101
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_4830 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.25 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pedobacter sp. GW460-11-11-14-LB5 0.22 CA265_RS18930 N-acetylglucosamine-6-phosphate deacetylase 0.18 CA265_RS10530 ribonuclease R low > 88
Pseudomonas fluorescens SBW25 0.22 PFLU_RS24645 N-acetylglucosamine-6-phosphate deacetylase 0.25 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25-INTG 0.22 PFLU_RS24645 N-acetylglucosamine-6-phosphate deacetylase 0.25 PFLU_RS02625 ribonuclease R low > 109
Paraburkholderia sabiae LMG 24235 0.21 QEN71_RS01585 N-acetylglucosamine-6-phosphate deacetylase 0.23 QEN71_RS22925 ribonuclease R low > 153
Pseudomonas simiae WCS417 0.21 PS417_22985 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.25 PS417_02555 exoribonuclease R low > 88
Paraburkholderia graminis OAS925 0.21 ABIE53_000689 N-acetylglucosamine-6-phosphate deacetylase 0.24 ABIE53_001940 ribonuclease R low > 113
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_05506 N-acetylglucosamine 6-phosphate deacetylase (EC 3.5.1.25) 0.24 H281DRAFT_00712 RNAse R low > 103
Herbaspirillum seropedicae SmR1 0.21 HSERO_RS22760 N-acetylglucosamine-6-phosphate deacetylase 0.22 HSERO_RS09290 ribonuclease R low > 78
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS02730 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.23 BPHYT_RS08455 ribonuclease R low > 109
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_17550 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) 0.25 AO356_08610 exoribonuclease R low > 104
Pseudomonas sp. RS175 0.20 PFR28_03512 N-acetylgalactosamine-6-phosphate deacetylase 0.25 PFR28_05130 Ribonuclease R low > 88
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS15565 N-acetylglucosamine-6-phosphate deacetylase 0.17 HMPREF1078_RS05885 ribonuclease R low > 61
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS07745 N-acetylglucosamine-6-phosphate deacetylase 0.18 HMPREF1058_RS10970 ribonuclease R low > 67
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS00260 N-acetylglucosamine-6-phosphate deacetylase 0.18 ABI39_RS06100 ribonuclease R low > 72

Not shown: 8 genomes with orthologs for Atu2608 only; 21 genomes with orthologs for Atu1303 only