| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS13545 | | amino acid permease | 1.0 | ABZR87_RS08765 | | TolC family outer membrane protein | 0.43 | 17 |
| Ralstonia solanacearum PSI07 | 0.91 | RPSI07_RS15760 | | amino acid permease | 0.83 | RPSI07_RS20545 | | channel protein TolC | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.90 | RALBFv3_RS01725 | | amino acid permease | 0.82 | RALBFv3_RS12715 | | channel protein TolC | low | > 76 |
| Ralstonia solanacearum UW163 | 0.90 | UW163_RS15035 | | amino acid permease | 0.82 | UW163_RS00850 | | channel protein TolC | — | — |
| Ralstonia solanacearum GMI1000 | 0.88 | RS_RS08000 | | amino acid permease | 0.82 | RS_RS03495 | | channel protein TolC | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.79 | RR42_RS01585 | | amino acid permease | 0.53 | RR42_RS15670 | | channel protein TolC | low | > 128 |
| Paraburkholderia graminis OAS925 | 0.73 | ABIE53_000447 | | APA family basic amino acid/polyamine antiporter | 0.07 | ABIE53_004979 | | outer membrane protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.71 | H281DRAFT_02180 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.39 | H281DRAFT_00100 | | outer membrane protein | low | > 103 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.46 | CA264_09570 | | amino acid permease | 0.07 | CA264_03645 | | hypothetical protein | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_05010 | potE | amino acid permease | 0.22 | OKGIIK_16950 | tolC | Outer membrane protein TolC | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS06670 | | amino acid permease | 0.24 | ABZR86_RS17210 | | TolC family outer membrane protein | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS01525 | | amino acid permease | 0.22 | LRK54_RS06685 | | TolC family outer membrane protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS01315 | | amino acid permease | 0.22 | LRK55_RS06430 | | TolC family outer membrane protein | 0.66 | 14 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.2936.1 | | Amino acid transporters | 0.22 | Xcc-8004.1042.1 | | Type I secretion outer membrane protein, TolC precursor | — | — |
| Parabacteroides merdae CL09T00C40 | 0.43 | HMPREF1078_RS09620 | | amino acid permease | 0.07 | HMPREF1078_RS17390 | | TolC family protein | low | > 61 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS13265 | | amino acid permease | 0.23 | ABIE51_RS17615 | | TolC family outer membrane protein | low | > 62 |
| Caulobacter crescentus NA1000 Δfur | 0.42 | CCNA_01242 | | amino acid permease | 0.12 | CCNA_01379 | | type I secretion outer membrane protein rsaFb | low | > 67 |
| Caulobacter crescentus NA1000 | 0.42 | CCNA_01242 | | amino acid permease | 0.12 | CCNA_01379 | | type I secretion outer membrane protein rsaFb | 0.68 | 25 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_003040 | | amino acid permease | 0.10 | TX73_009310 | | TolC family outer membrane protein | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.41 | Ga0059261_1053 | | amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) | 0.10 | Ga0059261_3040 | | type I secretion outer membrane protein, TolC family | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.37 | A4249_RS05420 | | amino acid permease | 0.09 | A4249_RS08455 | | TolC family outer membrane protein | low | > 48 |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS20970 | | APC family permease | 0.09 | ABIE41_RS15655 | | TolC family outer membrane protein | low | > 77 |
| Pseudomonas putida KT2440 | 0.13 | PP_0544 | | Ethanolamine transporter | 0.23 | PP_4923 | | Outer membrane efflux protein | low | > 96 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_17155 | | APC family permease | 0.18 | IAI46_21945 | | outer membrane channel protein TolC | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.12 | HER17_RS12140 | | APC family permease | 0.20 | HER17_RS14085 | | TolC family outer membrane protein | low | > 75 |
| Pseudomonas sp. RS175 | 0.12 | PFR28_01269 | | Putrescine importer PuuP | 0.24 | PFR28_05090 | | Outer membrane protein TolC | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.12 | Pf1N1B4_5855 | | Putrescine importer | 0.25 | Pf1N1B4_1448 | | Type I secretion outer membrane protein, TolC precursor | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.12 | Psest_0670 | | ethanolamine permease | 0.23 | Psest_0476 | | type I secretion outer membrane protein, TolC family | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.12 | Pf6N2E2_2179 | | Putrescine importer | 0.25 | Pf6N2E2_3645 | | Type I secretion outer membrane protein, TolC precursor | low | > 103 |
| Dickeya dianthicola 67-19 | 0.12 | HGI48_RS09825 | | APC family permease | 0.21 | HGI48_RS01635 | | outer membrane channel protein TolC | low | > 71 |
| Rahnella sp. WP5 | 0.12 | EX31_RS20130 | | ethanolamine permease | 0.19 | EX31_RS08100 | | outer membrane channel protein TolC | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.12 | AO356_01520 | | porin | 0.25 | AO356_08815 | | channel protein TolC | low | > 104 |
| Dickeya dadantii 3937 | 0.12 | DDA3937_RS09815 | | APC family permease | 0.21 | DDA3937_RS01740 | | outer membrane channel protein TolC | low | > 74 |
| Pseudomonas fluorescens FW300-N2E3 | 0.12 | AO353_27910 | | porin | 0.24 | AO353_13005 | | channel protein TolC | low | > 101 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_3634 | | amino acid permease-associated region (RefSeq) | 0.21 | Shewana3_0725 | tolC | outer membrane channel protein (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.12 | DZA65_RS10150 | | APC family permease | 0.21 | DZA65_RS01710 | | outer membrane channel protein TolC | low | > 75 |
| Klebsiella michiganensis M5al | 0.12 | BWI76_RS03640 | | amino acid permease-associated protein | 0.20 | BWI76_RS24400 | | outer membrane channel protein TolC | low | > 92 |
| Shewanella oneidensis MR-1 | 0.12 | SO4081 | | amino acid permease (NCBI ptt file) | 0.20 | SO3904 | tolC | outer membrane protein TolC (NCBI ptt file) | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.11 | MPMX26_01769 | | putative amino acid permease YhdG | 0.16 | MPMX26_00182 | | Outer membrane protein TolC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.11 | OHPLBJKB_02386 | | Putrescine importer PuuP | 0.21 | OHPLBJKB_00668 | | Outer membrane protein TolC | low | > 73 |
| Escherichia coli ECRC62 | 0.11 | BNILDI_18285 | puuP | putrescine/proton symporter PuuP | 0.21 | BNILDI_00905 | tolC | outer membrane channel protein TolC | low | > 75 |
| Escherichia coli ECOR27 | 0.11 | NOLOHH_20135 | puuP | putrescine/proton symporter PuuP | 0.21 | NOLOHH_10610 | tolC | outer membrane channel protein TolC | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.11 | Psyr_2379 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.24 | Psyr_0543 | | Type I secretion outer membrane protein, TolC | low | > 86 |
| Escherichia coli BL21 | 0.11 | ECD_01273 | | putrescine importer | 0.21 | ECD_02907 | | transport channel | low | > 61 |
| Pseudomonas syringae pv. syringae B728a | 0.11 | Psyr_2379 | | amino acid/polyamine/organocation transporter, APC superfamily | 0.24 | Psyr_0543 | | Type I secretion outer membrane protein, TolC | low | > 86 |
| Escherichia coli BW25113 | 0.11 | b1296 | ycjJ | putative amino acid/amine transport protein (VIMSS) | 0.21 | b3035 | tolC | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | low | > 76 |
| Enterobacter asburiae PDN3 | 0.11 | EX28DRAFT_1496 | | Amino acid transporters | 0.19 | EX28DRAFT_3073 | | type I secretion outer membrane protein, TolC family | low | > 76 |
| Escherichia coli ECRC99 | 0.11 | KEDOAH_26325 | puuP | putrescine/proton symporter PuuP | 0.21 | KEDOAH_09340 | tolC | outer membrane channel protein TolC | — | — |
| Escherichia coli ECRC102 | 0.11 | NIAGMN_26620 | puuP | putrescine/proton symporter PuuP | 0.21 | NIAGMN_16570 | tolC | outer membrane channel protein TolC | — | — |
| Escherichia coli ECRC101 | 0.11 | MCAODC_15820 | puuP | putrescine/proton symporter PuuP | 0.21 | MCAODC_09320 | tolC | outer membrane channel protein TolC | low | > 87 |
| Escherichia coli ECRC100 | 0.11 | OKFHMN_02450 | puuP | putrescine/proton symporter PuuP | 0.21 | OKFHMN_18805 | tolC | outer membrane channel protein TolC | low | > 80 |
| Escherichia coli ECRC98 | 0.11 | JDDGAC_04995 | puuP | putrescine/proton symporter PuuP | 0.21 | JDDGAC_22440 | tolC | outer membrane channel protein TolC | low | > 86 |
| Pantoea sp. MT58 | 0.11 | IAI47_07130 | | APC family permease | 0.21 | IAI47_03135 | | outer membrane channel protein TolC | low | > 76 |
| Escherichia coli Nissle 1917 | 0.11 | ECOLIN_RS11915 | | putrescine/proton symporter PlaP | 0.21 | ECOLIN_RS17515 | | outer membrane channel protein TolC | low | > 55 |
| Enterobacter sp. TBS_079 | 0.11 | MPMX20_02998 | | Low-affinity putrescine importer PlaP | 0.19 | MPMX20_03882 | | Outer membrane protein TolC | low | > 85 |
| Escherichia coli ECOR38 | 0.10 | HEPCGN_03255 | plaP | putrescine/proton symporter PlaP | 0.21 | HEPCGN_17680 | tolC | outer membrane channel protein TolC | low | > 87 |
| Escherichia fergusonii Becca | 0.10 | EFB2_01842 | | Low-affinity putrescine importer PlaP | 0.21 | EFB2_00773 | | Outer membrane protein TolC | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.10 | GFF3916 | | Putrescine importer | 0.20 | GFF3149 | | Type I secretion outer membrane protein, TolC precursor | low | > 78 |
| Azospirillum sp. SherDot2 | 0.10 | MPMX19_05701 | | Putrescine transporter PotE | 0.12 | MPMX19_01309 | | Outer membrane efflux protein BepC | — | — |
| Variovorax sp. OAS795 | 0.10 | ABID97_RS19505 | | ethanolamine permease | 0.32 | ABID97_RS21375 | | TolC family outer membrane protein | low | > 91 |
| Pseudomonas sp. S08-1 | 0.09 | OH686_03555 | | Lysine/cadaverine antiporter membrane protein CadB | 0.23 | OH686_15890 | | Outer membrane channel TolC (OpmH) | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.08 | SMc02616 | | permease transmembrane protein | 0.09 | SMc02082 | | outer membrane secretion protein | — | — |
| Marinobacter adhaerens HP15 | 0.08 | HP15_180 | | amino acid transporter | 0.23 | HP15_451 | | type I secretion outer membrane protein, TolC family | — | — |
Not shown: 12 genomes with orthologs for ABZR87_RS13545 only; 20 genomes with orthologs for ABZR87_RS08765 only