| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Brevundimonas sp. GW460-12-10-14-LB2 | 1.0 | A4249_RS03825 | | MATE family efflux transporter | 1.0 | A4249_RS11495 | | response regulator transcription factor | 0.66 | 1 |
| Azospirillum sp. SherDot2 | 0.26 | MPMX19_01223 | | Multidrug resistance protein NorM | 0.42 | MPMX19_00295 | | Transcriptional regulatory protein QseB | low | > 112 |
| Dyella japonica UNC79MFTsu3.2 | 0.17 | ABZR86_RS12525 | | MATE family efflux transporter | 0.43 | ABZR86_RS20365 | | response regulator transcription factor | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.16 | LRK54_RS11085 | | MATE family efflux transporter | 0.42 | LRK54_RS14145 | | response regulator transcription factor | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.16 | LRK55_RS10790 | | MATE family efflux transporter | 0.42 | LRK55_RS13865 | | response regulator transcription factor | low | > 63 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.15 | ABZR88_RS09785 | | MATE family efflux transporter | 0.34 | ABZR88_RS08260 | | response regulator transcription factor | low | > 71 |
| Pseudomonas sp. S08-1 | 0.15 | OH686_02075 | | Na(+)/drug antiporter, MATE family of MDR efflux pumps | 0.50 | OH686_04665 | | Two-component system response regulator QseB | low | > 80 |
| Enterobacter sp. TBS_079 | 0.15 | MPMX20_01973 | | Multidrug resistance protein MdtK | 0.48 | MPMX20_03863 | | Transcriptional regulatory protein QseB | low | > 85 |
| Klebsiella michiganensis M5al | 0.15 | BWI76_RS16535 | | MATE family efflux transporter | 0.48 | BWI76_RS24335 | | two-component system response regulator QseB | low | > 92 |
| Vibrio cholerae E7946 ATCC 55056 | 0.15 | CSW01_07735 | | multidrug resistance protein NorM | 0.40 | CSW01_19595 | | DNA-binding response regulator | low | > 62 |
| Enterobacter asburiae PDN3 | 0.14 | EX28DRAFT_1660 | | putative efflux protein, MATE family | 0.47 | EX28DRAFT_3057 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 76 |
| Pseudomonas fluorescens FW300-N2C3 | 0.14 | AO356_02370 | | MATE family efflux transporter | 0.48 | AO356_02865 | | transcriptional regulator | low | > 104 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.14 | GFF3613 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.46 | GFF3138 | | Two-component system response regulator QseB | low | > 78 |
| Pseudomonas sp. RS175 | 0.14 | PFR28_01102 | | Multidrug resistance protein NorM | 0.48 | PFR28_01030 | | Transcriptional regulatory protein QseB | low | > 88 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.14 | OHPLBJKB_02061 | | Multidrug resistance protein MdtK | 0.48 | OHPLBJKB_00677 | | Transcriptional regulatory protein QseB | low | > 73 |
| Escherichia coli BL21 | 0.14 | ECD_01634 | | multidrug efflux system transporter | 0.48 | ECD_02897 | | quorum sensing DNA-binding response regulator in two-component regulatory system with QseC | low | > 61 |
| Pseudomonas fluorescens FW300-N1B4 | 0.14 | Pf1N1B4_3892 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.48 | Pf1N1B4_208 | | Two-component system response regulator QseB | low | > 87 |
| Escherichia coli BW25113 | 0.14 | b1663 | mdtK | multidrug efflux protein NorM (NCBI) | 0.49 | b3025 | qseB | DNA-binding response regulator in two-component regulatory system with QseC (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.14 | KEDOAH_00750 | mdtK | multidrug efflux MATE transporter MdtK | 0.48 | KEDOAH_09265 | | Transcriptional regulatory protein QseB | — | — |
| Escherichia coli ECRC102 | 0.14 | NIAGMN_00705 | mdtK | multidrug efflux MATE transporter MdtK | 0.48 | NIAGMN_16645 | | Transcriptional regulatory protein QseB | — | — |
| Escherichia fergusonii Becca | 0.14 | EFB2_02329 | | Multidrug resistance protein MdtK | 0.48 | EFB2_00788 | | Transcriptional regulatory protein QseB | low | > 86 |
| Escherichia coli ECRC101 | 0.14 | MCAODC_18050 | mdtK | multidrug efflux MATE transporter MdtK | 0.48 | MCAODC_09395 | | Transcriptional regulatory protein QseB | low | > 87 |
| Escherichia coli ECRC98 | 0.14 | JDDGAC_01950 | mdtK | multidrug efflux MATE transporter MdtK | 0.48 | JDDGAC_22515 | | Transcriptional regulatory protein QseB | low | > 86 |
| Escherichia coli Nissle 1917 | 0.14 | ECOLIN_RS09270 | | multidrug efflux MATE transporter MdtK | 0.48 | ECOLIN_RS17425 | | quorum sensing response regulator transcription factor QseB | — | — |
| Escherichia coli ECRC100 | 0.14 | OKFHMN_27360 | mdtK | multidrug efflux MATE transporter MdtK | 0.48 | OKFHMN_18880 | | Transcriptional regulatory protein QseB | low | > 80 |
| Escherichia coli ECOR38 | 0.14 | HEPCGN_05745 | mdtK | multidrug efflux MATE transporter MdtK | 0.48 | HEPCGN_17740 | | Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC | low | > 87 |
| Escherichia coli ECRC62 | 0.14 | BNILDI_16670 | mdtK | multidrug efflux MATE transporter MdtK | 0.48 | BNILDI_00855 | | Transcriptional regulatory protein QseB | low | > 75 |
| Escherichia coli ECOR27 | 0.14 | NOLOHH_17880 | mdtK | multidrug efflux MATE transporter MdtK | 0.48 | NOLOHH_10660 | | Transcriptional regulatory protein QseB | low | > 75 |
| Pseudomonas fluorescens FW300-N2E3 | 0.14 | AO353_00550 | | MATE family efflux transporter | 0.49 | AO353_19370 | | transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.14 | Pf6N2E2_2298 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.48 | Pf6N2E2_2397 | | Two-component system response regulator QseB | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.14 | Psyr_0073 | | Multi antimicrobial extrusion protein MatE | 0.44 | Psyr_3511 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.14 | Psyr_0073 | | Multi antimicrobial extrusion protein MatE | 0.44 | Psyr_3511 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS13155 | | MATE family efflux transporter | 0.52 | DZA65_RS22325 | | response regulator | low | > 75 |
| Pseudomonas fluorescens GW456-L13 | 0.14 | PfGW456L13_4049 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.48 | PfGW456L13_2299 | | Two-component system response regulator QseB | low | > 87 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_11210 | | MATE family efflux transporter | 0.43 | IAI46_21235 | | response regulator | low | > 86 |
| Dickeya dianthicola 67-19 | 0.13 | HGI48_RS12700 | | MATE family efflux transporter | 0.53 | HGI48_RS21345 | | response regulator | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.13 | HER17_RS09220 | | MATE family efflux transporter | 0.46 | HER17_RS21560 | | response regulator | low | > 75 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.13 | Xcc-8004.4760.1 | | Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM | 0.43 | Xcc-8004.4942.1 | | Two-component system regulatory protein | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.13 | MPMX26_00306 | | Multidrug resistance protein NorM | 0.44 | MPMX26_03163 | | Transcriptional regulatory protein QseB | low | > 36 |
| Pantoea sp. MT58 | 0.13 | IAI47_10820 | | MATE family efflux transporter | 0.52 | IAI47_00340 | | response regulator | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.13 | Psest_2549 | | putative efflux protein, MATE family | 0.47 | Psest_3476 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 67 |
| Rhizobium sp. OAE497 | 0.12 | ABIE40_RS12780 | | MATE family efflux transporter | 0.39 | ABIE40_RS17030 | | response regulator | low | > 107 |
| Erwinia tracheiphila SCR3 | 0.12 | LU632_RS11170 | | MATE family efflux transporter | 0.45 | LU632_RS21175 | pmrA | two-component system response regulator PmrA | low | > 74 |
| Rahnella sp. WP5 | 0.12 | EX31_RS13855 | | MATE family efflux transporter | 0.47 | EX31_RS03275 | | response regulator | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.12 | HSERO_RS04300 | | multidrug transporter MatE | 0.48 | HSERO_RS21985 | | transcriptional regulator | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.12 | MIT1002_02233 | | Na(+)/drug antiporter | 0.46 | MIT1002_00810 | | Transcriptional regulatory protein BasR | low | > 70 |
| Shewanella sp. ANA-3 | 0.12 | Shewana3_2039 | | MATE efflux family protein (RefSeq) | 0.46 | Shewana3_1885 | | two component transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.12 | SO2295 | | MATE efflux family protein (NCBI ptt file) | 0.46 | SO2104 | | DNA-binding response regulator YgiX, putative (NCBI ptt file) | low | > 76 |
| Pseudomonas putida KT2440 | 0.12 | PP_5262 | | Probable multidrug resistance protein NorM | 0.49 | PP_4225 | | two component system DNA-binding transcriptional activator QseB | low | > 96 |
| Lysobacter sp. OAE881 | 0.11 | ABIE51_RS02170 | | MATE family efflux transporter | 0.45 | ABIE51_RS00875 | | response regulator transcription factor | low | > 62 |
| Agrobacterium fabrum C58 | 0.11 | Atu2172 | | multidrug efflux protein | 0.44 | Atu4019 | | two component response regulator | low | > 89 |
| Ralstonia solanacearum PSI07 | 0.11 | RPSI07_RS18275 | | MATE family efflux transporter | 0.46 | RPSI07_RS07290 | | DNA-binding response regulator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.11 | RS_RS05915 | | MATE family efflux transporter | 0.47 | RS_RS24590 | | DNA-binding response regulator | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.11 | ABIE53_002038 | | MATE family multidrug resistance protein | 0.53 | ABIE53_003418 | | two-component system response regulator QseB | low | > 113 |
| Ralstonia solanacearum UW163 | 0.11 | UW163_RS12570 | | MATE family efflux transporter | 0.46 | UW163_RS17155 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.11 | RALBFv3_RS15100 | | MATE family efflux transporter | 0.46 | RALBFv3_RS16415 | | DNA-binding response regulator | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.11 | ABZR87_RS10730 | | MATE family efflux transporter | 0.48 | ABZR87_RS22890 | | response regulator transcription factor | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.11 | H281DRAFT_00822 | | multidrug resistance protein, MATE family | 0.53 | H281DRAFT_04180 | | two component transcriptional regulator, winged helix family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.10 | BPHYT_RS14600 | | multidrug transporter MatE | 0.53 | BPHYT_RS16220 | | transcriptional regulator | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.10 | QEN71_RS04380 | | MATE family efflux transporter | 0.51 | QEN71_RS02475 | | response regulator | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.10 | RR42_RS13335 | | multidrug transporter MatE | 0.48 | RR42_RS30345 | | XRE family transcriptional regulator | low | > 128 |
| Dechlorosoma suillum PS | 0.10 | Dsui_1442 | | putative efflux protein, MATE family | 0.47 | Dsui_3448 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | low | > 51 |
| Parabacteroides merdae CL09T00C40 | 0.09 | HMPREF1078_RS10360 | | MATE family efflux transporter | 0.32 | HMPREF1078_RS17705 | | response regulator transcription factor | low | > 61 |
| Castellaniella sp019104865 MT123 | 0.08 | ABCV34_RS00895 | | MATE family efflux transporter | 0.42 | ABCV34_RS11770 | | response regulator | low | > 48 |
Not shown: 29 genomes with orthologs for A4249_RS03825 only; 5 genomes with orthologs for A4249_RS11495 only