| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella sp. ANA-3 | 1.0 | Shewana3_0099 | | histidine utilization repressor (RefSeq) | 1.0 | Shewana3_0059 | | two component transcriptional regulator (RefSeq) | 0.48 | 20 |
| Shewanella oneidensis MR-1 | 0.98 | SO0096 | hutC | histidine utilization repressor (NCBI ptt file) | 0.92 | SO0059 | kdpE | transcriptional regulatory protein KdpE (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_00903 | | putative HTH-type transcriptional regulator YurK | 0.44 | MIT1002_01389 | | KDP operon transcriptional regulatory protein KdpE | low | > 70 |
| Pseudomonas putida KT2440 | 0.48 | PP_5035 | | Histidine utilization repressor | 0.46 | PP_4157 | | two-component system DNA-binding response activator KdpE | low | > 96 |
| Rhizobium sp. OAE497 | 0.48 | ABIE40_RS23900 | | histidine utilization repressor | 0.33 | ABIE40_RS24605 | | response regulator transcription factor | low | > 107 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_04937 | | Mannosyl-D-glycerate transport/metabolism system repressor MngR | 0.34 | MPMX19_03749 | | KDP operon transcriptional regulatory protein KdpE | low | > 112 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_0366 | | transcriptional regulator, GntR family | 0.48 | Psyr_2051 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_0366 | | transcriptional regulator, GntR family | 0.48 | Psyr_2051 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | low | > 86 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS15100 | | histidine utilization repressor | 0.39 | HGI48_RS06410 | | two-component system response regulator KdpE | low | > 71 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_329 | | Histidine utilization repressor | 0.46 | PfGW456L13_2205 | | sensor histidine kinase | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1590 | | Histidine utilization repressor | 0.47 | Pf1N1B4_311 | | sensor histidine kinase | low | > 87 |
| Dickeya dadantii 3937 | 0.46 | DDA3937_RS15020 | | histidine utilization repressor | 0.40 | DDA3937_RS06365 | | two-component system response regulator KdpE | low | > 74 |
| Dickeya dianthicola ME23 | 0.46 | DZA65_RS15850 | | histidine utilization repressor | 0.39 | DZA65_RS06755 | | two-component system response regulator KdpE | low | > 75 |
| Pseudomonas fluorescens SBW25 | 0.46 | PFLU_RS01765 | | histidine utilization repressor | 0.47 | PFLU_RS08245 | | response regulator | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_3807 | | Histidine utilization repressor | 0.46 | Pf6N2E2_2490 | | sensor histidine kinase | low | > 103 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_04963 | | HTH-type transcriptional repressor NagR | 0.46 | PFR28_00943 | | KDP operon transcriptional regulatory protein KdpE | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.46 | PFLU_RS01765 | | histidine utilization repressor | 0.47 | PFLU_RS08245 | | response regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.46 | PS417_01710 | | histidine utilization repressor | 0.47 | PS417_08305 | | transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_12240 | | histidine utilization repressor | 0.46 | AO353_18935 | | transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_09640 | | histidine utilization repressor | 0.47 | AO356_03295 | | transcriptional regulator | low | > 104 |
| Pantoea sp. MT58 | 0.45 | IAI47_13270 | | histidine utilization repressor | 0.35 | IAI47_13830 | | two-component system response regulator KdpE | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_06100 | | histidine utilization repressor | 0.34 | CSW01_16895 | | DNA-binding response regulator | low | > 62 |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_2221 | | histidine utilization repressor, proteobacterial | 0.36 | EX28DRAFT_2284 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 76 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS08730 | | histidine utilization repressor | 0.37 | BWI76_RS08300 | | DNA-binding response regulator | — | — |
| Sinorhizobium meliloti 1021 | 0.45 | SMc00674 | | histidine utilization repressor transcription regulator protein | 0.39 | SMa2325 | | transcriptional regulator | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.45 | BPHYT_RS07560 | | histidine utilization repressor | 0.36 | BPHYT_RS06465 | | transcriptional regulator | — | — |
| Rahnella sp. WP5 | 0.45 | EX31_RS16675 | | histidine utilization repressor | 0.38 | EX31_RS23330 | | two-component system response regulator KdpE | low | > 89 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_01398 | | HTH-type transcriptional repressor NagR | 0.36 | MPMX20_01337 | | KDP operon transcriptional regulatory protein KdpE | low | > 85 |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_001730 | | GntR family histidine utilization transcriptional repressor | 0.36 | ABIE53_001557 | | two-component system KDP operon response regulator KdpE | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04872 | | transcriptional regulator, histidine utilization repressor, GntR family | 0.37 | H281DRAFT_04533 | | two-component system, OmpR family, KDP operon response regulator KdpE | — | — |
| Pseudomonas sp. S08-1 | 0.44 | OH686_16760 | | histidine utilization repressor | 0.44 | OH686_01885 | | DNA-binding response regulator KdpE | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS07755 | | histidine utilization repressor | 0.37 | QEN71_RS24340 | | two-component system response regulator KdpE | low | > 153 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS03415 | | histidine utilization repressor | 0.37 | ABID97_RS01005 | | two-component system response regulator KdpE | low | > 91 |
| Cupriavidus basilensis FW507-4G11 | 0.43 | RR42_RS16925 | | histidine utilization repressor | 0.38 | RR42_RS00500 | | transcriptional regulator | 0.30 | 60 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF3591 | | Histidine utilization repressor | 0.42 | GFF4475 | | sensor histidine kinase | low | > 90 |
| Variovorax sp. SCN45 | 0.43 | GFF6410 | | Histidine utilization repressor | 0.36 | GFF3521 | | DNA-binding response regulator KdpE | low | > 127 |
| Ralstonia sp. UNC404CL21Col | 0.43 | ABZR87_RS01035 | | histidine utilization repressor | 0.38 | ABZR87_RS03270 | | two-component system response regulator KdpE | low | > 80 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_10615 | | histidine utilization repressor | 0.38 | IAI46_06160 | | two-component system response regulator KdpE | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF665 | | Histidine utilization repressor | 0.38 | GFF4606 | | sensor histidine kinase | low | > 78 |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS05400 | | histidine utilization repressor | 0.39 | RALBFv3_RS07605 | | two-component system response regulator KdpE | low | > 76 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS08225 | | histidine utilization repressor | 0.39 | UW163_RS06015 | | two-component system response regulator KdpE | — | — |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS13260 | | histidine utilization repressor | 0.39 | RS_RS15505 | | two-component system response regulator KdpE | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS11905 | | histidine utilization repressor | 0.39 | RPSI07_RS09645 | | two-component system response regulator KdpE | low | > 81 |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A1294 | | Transcriptional Regulator, Histidine utilization repressor, GntR family (NCBI) | 0.39 | Rru_A1159 | | Two component Transcriptional regulator, Winged helix family (NCBI) | low | > 58 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_2559 | | Histidine utilization repressor | 0.36 | Ac3H11_2407 | | sensor histidine kinase | low | > 79 |
| Bosea sp. OAE506 | 0.26 | ABIE41_RS23630 | | histidine utilization repressor | 0.35 | ABIE41_RS24235 | | response regulator | low | > 77 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_01013 | | histidine utilization repressor | 0.40 | CCNA_01667 | | two-component response regulator kdpE | low | > 66 |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_3966 | | Transcriptional regulators | 0.33 | Ga0059261_3886 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 68 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_01013 | | histidine utilization repressor | 0.40 | CCNA_01667 | | two-component response regulator kdpE | low | > 67 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.23 | A4249_RS06610 | | histidine utilization repressor | 0.37 | A4249_RS15625 | | response regulator | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.20 | Xcc-8004.3293.1 | | Histidine utilization repressor | 0.42 | Xcc-8004.4378.1 | | sensor histidine kinase | low | > 74 |
| Azospirillum brasilense Sp245 | 0.15 | AZOBR_RS31515 | | GntR family transcriptional regulator | 0.32 | AZOBR_RS23980 | | Fis family transcriptional regulator | low | > 97 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.15 | OHPLBJKB_00328 | | putative fructoselysine utilization operon transcriptional repressor | 0.39 | OHPLBJKB_03023 | | KDP operon transcriptional regulatory protein KdpE | low | > 73 |
| Escherichia coli BL21 | 0.15 | ECD_03225 | | putative DNA-binding transcriptional regulator | 0.39 | ECD_00651 | | response regulator in two-component regulatory system with KdpD | low | > 60 |
| Escherichia coli BW25113 | 0.15 | b3375 | yhfR | putative transcriptional regulator (VIMSS) | 0.39 | b0694 | kdpE | DNA-binding response regulator in two-component regulatory system with KdpD (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.15 | KEDOAH_10995 | phoB | transcriptional regulator PhoB | 0.39 | KEDOAH_20890 | kdpE | two-component system response regulator KdpE | — | — |
| Escherichia coli ECRC101 | 0.15 | OKFHMN_17145 | phoB | transcriptional regulator PhoB | 0.39 | OKFHMN_07080 | kdpE | two-component system response regulator KdpE | — | — |
| Escherichia coli ECRC102 | 0.15 | NIAGMN_14915 | phoB | transcriptional regulator PhoB | 0.39 | NIAGMN_05135 | kdpE | two-component system response regulator KdpE | — | — |
| Escherichia coli ECRC98 | 0.15 | JDDGAC_20775 | phoB | transcriptional regulator PhoB | 0.39 | JDDGAC_10730 | kdpE | two-component system response regulator KdpE | — | — |
| Escherichia coli ECRC101 | 0.15 | MCAODC_07675 | phoB | transcriptional regulator PhoB | 0.39 | MCAODC_26295 | kdpE | two-component system response regulator KdpE | — | — |
| Herbaspirillum seropedicae SmR1 | 0.15 | HSERO_RS14920 | | GntR family transcriptional regulator | 0.34 | HSERO_RS18850 | | transcriptional regulator | — | — |
| Escherichia coli ECOR38 | 0.14 | HEPCGN_13815 | yidP | Uncharacterized HTH-type transcriptional regulator YidP | 0.39 | HEPCGN_01155 | kdpE | two-component system response regulator KdpE | low | > 85 |
| Escherichia coli ECOR27 | 0.14 | NOLOHH_07250 | yidP | Uncharacterized HTH-type transcriptional regulator YidP | 0.39 | NOLOHH_23460 | kdpE | two-component system response regulator KdpE | — | — |
| Escherichia coli ECRC62 | 0.14 | BNILDI_04280 | yidP | Uncharacterized HTH-type transcriptional regulator YidP | 0.39 | BNILDI_21465 | kdpE | two-component system response regulator KdpE | — | — |
| Dechlorosoma suillum PS | 0.14 | Dsui_2210 | | transcriptional regulator | 0.40 | Dsui_0271 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | low | > 51 |
| Lysobacter sp. OAE881 | 0.14 | ABIE51_RS01625 | | GntR family transcriptional regulator | 0.41 | ABIE51_RS10000 | | response regulator transcription factor | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.11 | HER17_RS13540 | | GntR family transcriptional regulator | 0.39 | HER17_RS15050 | | two-component system response regulator KdpE | low | > 75 |
Not shown: 8 genomes with orthologs for Shewana3_0099 only; 9 genomes with orthologs for Shewana3_0059 only