Homologs of Pf1N1B4_3246 from Pseudomonas fluorescens FW300-N1B4

RND efflux system, inner membrane transporter CmeB
SEED: RND efflux system, inner membrane transporter CmeB
KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3246 RND efflux system, inner membrane transporter CmeB strong 100 100
o Pseudomonas fluorescens FW300-N2E3 AO353_17295 multidrug transporter strong 96 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4581 RND efflux system, inner membrane transporter CmeB strong 94 100
o Pseudomonas fluorescens FW300-N2C3 AO356_04880 multidrug transporter strong 93 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2824 RND efflux system, inner membrane transporter CmeB strong 93 100
o Pseudomonas sp. RS175 PFR28_00631 putative efflux pump membrane transporter TtgB strong 92 100
o Pseudomonas putida KT2440 PP_1385 Probable efflux pump membrane transporter TtgB strong 87 100
o Pseudomonas syringae pv. syringae B728a Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 strong 83 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4008 Hydrophobe/amphiphile efflux-1 HAE1 no data 83 99
o Pseudomonas simiae WCS417 PS417_06770 multidrug transporter strong 82 100
o Pseudomonas fluorescens SBW25 PFLU_RS06805 efflux RND transporter permease subunit cofit 82 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06805 efflux RND transporter permease subunit strong 82 100
o Pseudomonas sp. S08-1 OH686_16050 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) cofit 82 99
o Pseudomonas stutzeri RCH2 Psest_0310 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 76 99
  Pseudomonas fluorescens FW300-N2C3 AO356_30440 multidrug transporter insig. 76 99
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1949 RND efflux system, inner membrane transporter CmeB insig. 76 99
o Rahnella sp. WP5 EX31_RS22470 multidrug efflux RND transporter permease subunit cofit 68 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4379 RND efflux system, inner membrane transporter CmeB sig. 68 97
o Klebsiella michiganensis M5al BWI76_RS06775 multidrug efflux RND transporter permease subunit strong 68 97
o Pantoea sp. MT58 IAI47_14515 multidrug efflux RND transporter permease subunit cofit 68 97
o Enterobacter asburiae PDN3 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family cofit 67 100
o Enterobacter sp. TBS_079 MPMX20_01064 Multidrug efflux pump subunit AcrB strong 67 100
o Escherichia coli Nissle 1917 ECOLIN_RS02750 efflux RND transporter permease AcrB insig. 67 97
o Escherichia coli BL21 ECD_00413 multidrug efflux system protein strong 67 97
o Escherichia fergusonii Becca EFB2_03596 Multidrug efflux pump subunit AcrB insig. 67 97
o Escherichia coli ECOR27 NOLOHH_01140 acrB efflux RND transporter permease AcrB cofit 67 97
o Escherichia coli ECOR38 HEPCGN_06820 acrB efflux RND transporter permease AcrB strong 67 97
o Escherichia coli ECRC62 BNILDI_22555 acrB efflux RND transporter permease AcrB insig. 67 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03212 Multidrug efflux pump subunit AcrB cofit 67 97
o Escherichia coli BW25113 b0462 acrB multidrug efflux system protein (NCBI) strong 67 97
o Escherichia coli ECRC101 OKFHMN_08205 acrB efflux RND transporter permease AcrB insig. 67 97
o Escherichia coli ECRC101 MCAODC_27430 acrB efflux RND transporter permease AcrB insig. 67 97
o Escherichia coli ECRC102 NIAGMN_06260 acrB efflux RND transporter permease AcrB insig. 67 97
o Escherichia coli ECRC99 KEDOAH_19760 acrB efflux RND transporter permease AcrB no data 67 97
o Erwinia tracheiphila SCR3 LU632_RS18185 efflux RND transporter permease subunit no data 67 97
  Rahnella sp. WP5 EX31_RS13325 efflux RND transporter permease subunit insig. 65 100
o Serratia liquefaciens MT49 IAI46_05185 multidrug efflux RND transporter permease subunit SdeY cofit 67 97
o Azospirillum brasilense Sp245 AZOBR_RS30185 multidrug transporter insig. 65 98
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2116 RND efflux system, inner membrane transporter CmeB insig. 66 97
  Serratia liquefaciens MT49 IAI46_16735 efflux RND transporter permease subunit insig. 65 99
o Pectobacterium carotovorum WPP14 HER17_RS15740 multidrug efflux RND transporter permease subunit cofit 66 97
o Azospirillum sp. SherDot2 MPMX19_05884 Multidrug efflux pump subunit AcrB insig. 64 99
o Desulfovibrio vulgaris Hildenborough JW710 DVU2816 multidrug resistance protein (TIGR) sig. 63 99
  Enterobacter sp. TBS_079 MPMX20_04175 Multidrug export protein AcrF insig. 65 97
  Escherichia coli ECOR27 NOLOHH_09440 acrF multidrug efflux RND transporter permease subunit AcrF cofit 65 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00439 Multidrug export protein AcrF insig. 65 97
  Klebsiella michiganensis M5al BWI76_RS25585 multidrug efflux RND transporter permease subunit insig. 65 97
  Escherichia coli ECRC62 BNILDI_02080 acrF multidrug efflux RND transporter permease subunit AcrF insig. 65 97
  Escherichia coli BL21 ECD_03124 multidrug efflux system protein insig. 65 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS02525 efflux RND transporter permease subunit strong 62 100
  Escherichia fergusonii Becca EFB2_00558 Multidrug export protein AcrF insig. 65 97
  Escherichia coli BW25113 b3266 acrF multidrug efflux system protein (NCBI) insig. 65 97
  Escherichia coli Nissle 1917 ECOLIN_RS18755 multidrug efflux RND transporter permease subunit AcrF insig. 65 97
  Enterobacter asburiae PDN3 EX28DRAFT_3319 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family insig. 64 97
o Dickeya dadantii 3937 DDA3937_RS05735 multidrug efflux RND transporter permease subunit strong 65 97
o Shewanella sp. ANA-3 Shewana3_4045 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) strong 65 98
o Shewanella amazonensis SB2B Sama_3554 AcrB/AcrD/AcrF family protein (RefSeq) strong 64 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04170 multidrug efflux pump strong 62 100
o Shewanella oneidensis MR-1 SO4692 AcrB/AcrD/AcrF family protein (NCBI ptt file) strong 64 99
o Cupriavidus basilensis FW507-4G11 RR42_RS32420 multidrug efflux RND transporter permease subunit insig. 63 99
o Paraburkholderia graminis OAS925 ABIE53_003408 multidrug efflux pump strong 62 99
o Shewanella loihica PV-4 Shew_0032 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) strong 64 97
  Paraburkholderia sabiae LMG 24235 QEN71_RS29865 efflux RND transporter permease subunit insig. 63 98
o Burkholderia phytofirmans PsJN BPHYT_RS16170 multidrug efflux RND transporter permease subunit no data 62 99
o Dickeya dianthicola ME23 DZA65_RS06115 multidrug efflux RND transporter permease subunit strong 63 100
o Dickeya dianthicola 67-19 HGI48_RS05790 multidrug efflux RND transporter permease subunit cofit 63 100
o Ralstonia solanacearum PSI07 RPSI07_RS03390 multidrug efflux RND transporter permease subunit insig. 63 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1794.1 RND efflux system, inner membrane transporter CmeB insig. 63 100
o Rhodospirillum rubrum S1H Rru_A2051 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) cofit 65 98
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS19795 multidrug efflux RND transporter permease subunit insig. 64 99
o Ralstonia solanacearum UW163 UW163_RS19380 multidrug efflux RND transporter permease subunit insig. 64 99
o Ralstonia solanacearum GMI1000 RS_RS21030 multidrug efflux RND transporter permease subunit insig. 64 98
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS18285 efflux RND transporter permease subunit insig. 63 99
  Serratia liquefaciens MT49 IAI46_18690 multidrug efflux RND transporter permease AcrD insig. 62 98
o Caulobacter crescentus NA1000 CCNA_00850 cation/multidrug efflux pump acrB2 strong 64 97
o Caulobacter crescentus NA1000 Δfur CCNA_00850 cation/multidrug efflux pump acrB2 cofit 64 97
o Herbaspirillum seropedicae SmR1 HSERO_RS06815 multidrug transporter insig. 63 99
  Rahnella sp. WP5 EX31_RS22805 multidrug efflux RND transporter permease AcrD insig. 61 98
o Bosea sp. OAE506 ABIE41_RS01595 efflux RND transporter permease subunit insig. 62 98
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2188 RND efflux system, inner membrane transporter CmeB cofit 60 98
  Escherichia coli ECOR38 HEPCGN_21140 acrD multidrug efflux RND transporter permease AcrD cofit 59 98
  Enterobacter asburiae PDN3 EX28DRAFT_0191 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family insig. 59 98
  Escherichia coli BL21 ECD_02361 aminoglycoside/multidrug efflux system insig. 59 98
  Escherichia fergusonii Becca EFB2_01418 Multidrug efflux pump subunit AcrB insig. 59 98
  Escherichia coli ECOR27 NOLOHH_13650 acrD multidrug efflux RND transporter permease AcrD insig. 59 98
  Escherichia coli ECRC62 BNILDI_12460 acrD multidrug efflux RND transporter permease AcrD insig. 59 98
  Escherichia coli BW25113 b2470 acrD aminoglycoside/multidrug efflux system (NCBI) strong 59 98
  Escherichia coli ECRC101 OKFHMN_21970 acrD multidrug efflux RND transporter permease AcrD insig. 59 98
  Escherichia coli ECRC101 MCAODC_12500 acrD multidrug efflux RND transporter permease AcrD insig. 59 98
  Escherichia coli ECRC102 NIAGMN_19740 acrD multidrug efflux RND transporter permease AcrD insig. 59 98
o Escherichia coli ECRC98 JDDGAC_25915 acrD multidrug efflux RND transporter permease AcrD no data 59 98
  Escherichia coli ECRC99 KEDOAH_06250 acrD multidrug efflux RND transporter permease AcrD no data 59 98
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS19190 efflux RND transporter permease subunit strong 61 97
  Enterobacter sp. TBS_079 MPMX20_03331 Multidrug efflux pump subunit AcrB insig. 59 98
  Escherichia coli Nissle 1917 ECOLIN_RS14090 multidrug efflux RND transporter permease AcrD insig. 59 98
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01261 Multidrug efflux pump subunit AcrB insig. 59 98
  Klebsiella michiganensis M5al BWI76_RS20860 aminoglycoside/multidrug transporter subunit AcrD insig. 60 98
  Pantoea sp. MT58 IAI47_05310 multidrug efflux RND transporter permease AcrD insig. 60 98
  Escherichia coli ECRC101 OKFHMN_16275 mdtF multidrug efflux pump RND permease MdtF insig. 60 97
  Escherichia coli ECRC101 MCAODC_06790 mdtF multidrug efflux pump RND permease MdtF insig. 60 97