| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Azospirillum sp. SherDot2 | MPMX19_01131 | | hypothetical protein | no data | 100 | 100 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS07605 | | regulator | strong | 63 | 85 |
| | Azospirillum brasilense Sp245 | AZOBR_RS06745 | | regulator | insig. | 35 | 80 |
| | Azospirillum brasilense Sp245 | AZOBR_RS16625 | | regulator | insig. | 36 | 72 |
| | Agrobacterium fabrum C58 | Atu5378 | | two component response regulator | no data | 39 | 77 |
| | Azospirillum sp. SherDot2 | MPMX19_01090 | | Phyllosphere-induced regulator PhyR | insig. | 40 | 80 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0933 | | response regulator (TIGR) | insig. | 34 | 94 |
| | Azospirillum sp. SherDot2 | MPMX19_04245 | | hypothetical protein | insig. | 35 | 72 |
| | Azospirillum sp. SherDot2 | MPMX19_00465 | | putative transcriptional regulatory protein pdtaR | insig. | 39 | 85 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19190 | | DNA-binding response regulator | insig. | 28 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_02869 | | Sensor histidine kinase TmoS | insig. | 30 | 80 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS00670 | | response regulator | no data | 35 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_06040 | | Phyllosphere-induced regulator PhyR | insig. | 34 | 81 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2154 | | Response regulator of the LytR/AlgR family | insig. | 28 | 80 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3837 | | response regulator receiver and SARP domain protein (RefSeq) | insig. | 33 | 80 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0681 | | sensor histidine kinase/response regulator (TIGR) | strong | 30 | 81 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0013 | | Signal transduction histidine kinase | no data | 31 | 81 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0505 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 30 | 80 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2677 | | response regulator receiver sensor hybrid histidine kinase (RefSeq) | sig. | 32 | 80 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21690 | | regulator | insig. | 37 | 77 |
| o | Rhizobium sp. OAE497 | ABIE40_RS26605 | | response regulator | insig. | 33 | 84 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1054 | | diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) | insig. | 33 | 81 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1141 | | Response regulator of the LytR/AlgR family | no data | 28 | 78 |
| | Azospirillum sp. SherDot2 | MPMX19_04424 | | Phyllosphere-induced regulator PhyR | insig. | 36 | 77 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS06080 | | response regulator transcription factor | insig. | 30 | 75 |
| | Azospirillum sp. SherDot2 | MPMX19_04973 | | hypothetical protein | insig. | 33 | 73 |
| | Azospirillum brasilense Sp245 | AZOBR_RS25995 | | regulator | strong | 32 | 82 |
| | Rhodospirillum rubrum S1H | Rru_A0694 | | Response regulator receiver (CheY) and unknown domain protein (NCBI) | insig. | 34 | 82 |
| | Cellulophaga baltica 18 | M666_RS13715 | | response regulator | strong | 23 | 82 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1374 | | putative PAS/PAC sensor protein (RefSeq) | sig. | 33 | 80 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3490 | | Response regulator receiver domain/Sigma-70, region 4 | strong | 30 | 80 |
| | Rhizobium sp. OAE497 | ABIE40_RS22785 | | response regulator | insig. | 38 | 58 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3803 | | Response regulator of the LytR/AlgR family | strong | 27 | 82 |
| | Cellulophaga baltica 18 | M666_RS12540 | | sigma 54-interacting response regulator | insig. | 30 | 82 |
| | Bosea sp. OAE506 | ABIE41_RS04085 | | response regulator | sig. | 29 | 80 |
| | Dechlorosoma suillum PS | Dsui_1715 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | cofit | 31 | 84 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1460 | | putative PAS/PAC sensor protein (RefSeq) | cofit | 30 | 80 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c27080 | | response regulator receiver protein | insig. | 30 | 92 |
| | Lysobacter sp. OAE881 | ABIE51_RS08510 | | PAS domain-containing hybrid sensor histidine kinase/response regulator | insig. | 36 | 91 |
| | Rhodospirillum rubrum S1H | Rru_A3285 | | Response regulator receiver domain protein (CheY) (NCBI) | insig. | 29 | 78 |
| | Sphingobium sp. HT1-2 | GFF2319 | | DNA-directed RNA polymerase specialized sigma subunit, sigma24-like | cofit | 30 | 80 |
| | Caulobacter crescentus NA1000 | CCNA_00286 | | two-component receiver domain protein LovR | cofit | 34 | 82 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00286 | | two-component receiver domain protein LovR | cofit | 34 | 82 |
| | Rhizobium sp. OAE497 | ABIE40_RS20270 | | response regulator | insig. | 33 | 82 |
| | Agrobacterium fabrum C58 | Atu4162 | | two-component response regulator | strong | 31 | 75 |
| | Bosea sp. OAE506 | ABIE41_RS08275 | | HWE histidine kinase domain-containing protein | insig. | 32 | 87 |
| | Sinorhizobium meliloti 1021 | SMc01504 | | two-component response regulator | strong | 28 | 76 |
| | Rhizobium sp. OAE497 | ABIE40_RS14460 | | response regulator | strong | 29 | 75 |
| | Xanthobacter sp. DMC5 | GFF481 | | Phyllosphere-induced regulator PhyR | insig. | 35 | 79 |
| | Methylophilus sp. DMC18 | GFF2576 | | Phosphate regulon transcriptional regulatory protein PhoB | cofit | 32 | 82 |
| | Mycobacterium tuberculosis H37Rv | Rv1626 | | Probable two-component system transcriptional regulator | strong | 28 | 85 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS14210 | | response regulator | no data | 31 | 69 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS28960 | | histidine kinase | insig. | 32 | 82 |
| | Marinobacter adhaerens HP15 | HP15_2320 | | response regulator receiver protein | insig. | 31 | 75 |
| | Sinorhizobium meliloti 1021 | SMc00794 | | two-component response regulator | strong | 29 | 75 |
| | Cellulophaga baltica 18 | M666_RS18600 | | response regulator | sig. | 24 | 82 |
| | Xanthobacter sp. DMC5 | GFF1252 | | Sensor histidine kinase RcsC | no data | 31 | 83 |
| | Rhodopseudomonas palustris CGA009 | TX73_021890 | | response regulator | cofit | 27 | 75 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0271 | | response regulator (TIGR) | insig. | 36 | 80 |
| | Sinorhizobium meliloti 1021 | SMa0114 | | two-component response regulator | cofit | 31 | 79 |
| | Shewanella sp. ANA-3 | Shewana3_2879 | | two component transcriptional regulator (RefSeq) | insig. | 28 | 82 |
| | Shewanella oneidensis MR-1 | SO1558 | phoB | phosphate regulon response regulator PhoB (NCBI ptt file) | sig. | 28 | 82 |
| | Agrobacterium fabrum C58 | Atu4671 | | response regulator | insig. | 36 | 66 |
| | Rhizobium sp. OAE497 | ABIE40_RS30650 | | response regulator | insig. | 30 | 79 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0258 | | sensory box histidine kinase/response regulator (TIGR) | strong | 28 | 82 |
| | Dechlorosoma suillum PS | Dsui_0331 | | PAS domain S-box | insig. | 36 | 56 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_00095 | | response regulator | insig. | 29 | 75 |
| | Shewanella amazonensis SB2B | Sama_1074 | | response regulator receiver protein (RefSeq) | insig. | 28 | 82 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS01490 | | XRE family transcriptional regulator | no data | 27 | 78 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS00190 | | response regulator transcription factor EsaR | no data | 27 | 78 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3640 | | Two-component hybrid sensor and regulator | no data | 32 | 72 |
| | Pseudomonas sp. RS175 | PFR28_02307 | | hypothetical protein | insig. | 31 | 86 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_18710 | | chemotaxis protein CheY | sig. | 30 | 86 |
| | Shewanella loihica PV-4 | Shew_2749 | | two component transcriptional regulator (RefSeq) | insig. | 27 | 82 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS14785 | | response regulator | strong | 26 | 80 |
| | Paraburkholderia graminis OAS925 | ABIE53_001454 | | CheY-like chemotaxis protein | sig. | 32 | 84 |
| | Rhizobium sp. OAE497 | ABIE40_RS24250 | | response regulator | insig. | 31 | 81 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2933 | | response regulator/sensory box/HDIG domain protein (TIGR) | strong | 26 | 83 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1459.1 | | Two-component system regulatory protein | insig. | 28 | 80 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS16810 | | Fis family transcriptional regulator | strong | 30 | 87 |
| | Sphingobium sp. HT1-2 | GFF2215 | | Two-component system sensor histidine kinase | cofit | 30 | 75 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_03685 | | Histidine kinase | insig. | 29 | 75 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_2551 | | response regulator receiver protein (RefSeq) | insig. | 29 | 58 |
| | Acinetobacter radioresistens SK82 | MPMX26_00187 | | Transcriptional regulatory protein YpdB | insig. | 24 | 81 |
| | Pseudomonas stutzeri RCH2 | Psest_0693 | | His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | strong | 38 | 46 |
| | Pseudomonas stutzeri RCH2 | Psest_4139 | | PAS domain S-box | sig. | 32 | 75 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05344 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | insig. | 30 | 77 |
| | Paraburkholderia graminis OAS925 | ABIE53_006481 | | CheY-like chemotaxis protein | sig. | 30 | 77 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS07940 | | response regulator | insig. | 29 | 77 |
| | Xanthobacter sp. DMC5 | GFF2318 | | Phyllosphere-induced regulator PhyR | insig. | 28 | 76 |
| | Caulobacter crescentus NA1000 | CCNA_03591 | | anti-anti sigma factor/receiver protein PhyR | strong | 27 | 78 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03591 | | anti-anti sigma factor/receiver protein PhyR | cofit | 27 | 78 |
| | Bifidobacterium breve UCC2003 | BBR_RS14310 | | ANTAR domain-containing protein | no data | 25 | 89 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS24295 | | response regulator receiver | no data | 31 | 77 |
| | Paraburkholderia graminis OAS925 | ABIE53_000395 | | DNA-binding NtrC family response regulator | no data | 26 | 78 |
| | Bosea sp. OAE506 | ABIE41_RS24110 | | response regulator | insig. | 33 | 84 |
| | Rhizobium sp. OAE497 | ABIE40_RS27485 | | response regulator | insig. | 32 | 82 |
| | Azospirillum sp. SherDot2 | MPMX19_00072 | | Aerobic respiration control protein ArcA | insig. | 30 | 85 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4012 | | response regulator | insig. | 29 | 79 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02234 | | two component transcriptional regulator, Fis family | no data | 26 | 78 |