Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Azospirillum sp. SherDot2 | MPMX19_00465 | | putative transcriptional regulatory protein pdtaR | insig. | 100 | 100 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_2677 | | response regulator receiver sensor hybrid histidine kinase (RefSeq) | sig. | 45 | 91 |
o | Agrobacterium fabrum C58 | Atu5378 | | two component response regulator | no data | 50 | 83 |
| Azospirillum brasilense Sp245 | AZOBR_RS07605 | | regulator | strong | 47 | 90 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU0681 | | sensor histidine kinase/response regulator (TIGR) | strong | 45 | 80 |
| Azospirillum sp. SherDot2 | MPMX19_02869 | | Sensor histidine kinase TmoS | insig. | 45 | 76 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1141 | | Response regulator of the LytR/AlgR family | no data | 36 | 76 |
| Synechocystis sp000284455 PCC 6803 | SGL_RS06080 | | response regulator transcription factor | insig. | 38 | 76 |
| Azospirillum sp. SherDot2 | MPMX19_01131 | | hypothetical protein | no data | 39 | 90 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU2933 | | response regulator/sensory box/HDIG domain protein (TIGR) | strong | 37 | 79 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_1460 | | putative PAS/PAC sensor protein (RefSeq) | cofit | 37 | 85 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1054 | | diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) | insig. | 30 | 86 |
| Cellulophaga baltica 18 | M666_RS12540 | | sigma 54-interacting response regulator | insig. | 36 | 83 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0505 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 34 | 85 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0013 | | Signal transduction histidine kinase | no data | 33 | 81 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19190 | | DNA-binding response regulator | insig. | 35 | 85 |
| Cellulophaga baltica 18 | M666_RS18600 | | response regulator | sig. | 39 | 74 |
| Sinorhizobium meliloti 1021 | SMc01504 | | two-component response regulator | strong | 35 | 84 |
| Mycobacterium tuberculosis H37Rv | Rv1626 | | Probable two-component system transcriptional regulator | strong | 34 | 97 |
| Dickeya dadantii 3937 | DDA3937_RS04715 | | response regulator transcription factor | insig. | 34 | 82 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3803 | | Response regulator of the LytR/AlgR family | strong | 32 | 82 |
| Rhizobium sp. OAE497 | ABIE40_RS14460 | | response regulator | strong | 34 | 84 |
| Azospirillum sp. SherDot2 | MPMX19_04245 | | hypothetical protein | insig. | 33 | 90 |
| Desulfovibrio vulgaris Hildenborough JW710 | DVU0933 | | response regulator (TIGR) | insig. | 32 | 84 |
| Azospirillum sp. SherDot2 | MPMX19_04973 | | hypothetical protein | insig. | 36 | 78 |
| Dickeya dianthicola ME23 | DZA65_RS04580 | | response regulator transcription factor | insig. | 34 | 82 |
| Azospirillum brasilense Sp245 | AZOBR_RS06745 | | regulator | insig. | 32 | 85 |
| Azospirillum sp. SherDot2 | MPMX19_04424 | | Phyllosphere-induced regulator PhyR | insig. | 33 | 84 |
| Sphingomonas koreensis DSMZ 15582 | Ga0059261_3490 | | Response regulator receiver domain/Sigma-70, region 4 | strong | 35 | 88 |
| Cellulophaga baltica 18 | M666_RS13715 | | response regulator | strong | 28 | 91 |
| Azospirillum sp. SherDot2 | MPMX19_01090 | | Phyllosphere-induced regulator PhyR | insig. | 32 | 85 |
| Synechocystis sp000284455 PCC 6803 | SGL_RS11370 | | response regulator transcription factor | no data | 34 | 80 |
| Azospirillum brasilense Sp245 | AZOBR_RS21690 | | regulator | insig. | 32 | 86 |
| Azospirillum brasilense Sp245 | AZOBR_RS16625 | | regulator | insig. | 31 | 90 |
| Pantoea sp. MT58 | IAI47_21710 | | response regulator transcription factor | insig. | 36 | 79 |
| Phaeobacter inhibens DSM 17395 | PGA1_c27080 | | response regulator receiver protein | insig. | 32 | 93 |
| Enterobacter asburiae PDN3 | EX28DRAFT_1517 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | insig. | 31 | 79 |
| Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS14785 | | response regulator | strong | 30 | 84 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2154 | | Response regulator of the LytR/AlgR family | insig. | 30 | 90 |
| Bosea sp. OAE506 | ABIE41_RS12310 | | chemotaxis-specific protein-glutamate methyltransferase CheB | insig. | 28 | 84 |
| Rhodopseudomonas palustris CGA009 | TX73_021890 | | response regulator | cofit | 30 | 84 |
| Dinoroseobacter shibae DFL-12 | Dshi_3837 | | response regulator receiver and SARP domain protein (RefSeq) | insig. | 30 | 89 |
| Bifidobacterium breve UCC2003 | BBR_RS14310 | | ANTAR domain-containing protein | no data | 32 | 81 |
| Fusobacterium nucleatum SB010 | HUW76_00375 | | ANTAR domain-containing response regulator | cofit | 34 | 76 |
| Azospirillum brasilense Sp245 | AZOBR_RS25995 | | regulator | strong | 32 | 90 |
| Azospirillum sp. SherDot2 | MPMX19_00482 | | Sensor histidine kinase RcsC | sig. | 34 | 89 |
| Agrobacterium fabrum C58 | Atu4162 | | two-component response regulator | strong | 32 | 84 |
| Caulobacter crescentus NA1000 | CCNA_00286 | | two-component receiver domain protein LovR | cofit | 33 | 83 |
| Caulobacter crescentus NA1000 Δfur | CCNA_00286 | | two-component receiver domain protein LovR | cofit | 33 | 83 |
| Dechlorosoma suillum PS | Dsui_2783 | | response regulator with CheY-like receiver domain and winged-helix DNA-binding domain | cofit | 33 | 90 |
| Variovorax sp. OAS795 | ABID97_RS11965 | | PAS domain S-box protein | insig. | 33 | 88 |
| Klebsiella michiganensis M5al | BWI76_RS10845 | | DNA-binding response regulator | insig. | 31 | 79 |
| Bosea sp. OAE506 | ABIE41_RS04085 | | response regulator | sig. | 29 | 84 |
| Pectobacterium carotovorum WPP14 | HER17_RS07485 | | response regulator | insig. | 33 | 79 |
| Dyella japonica UNC79MFTsu3.2 | ABZR86_RS01125 | | LytTR family transcriptional regulator DNA-binding domain-containing protein | insig. | 32 | 90 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1453 | rpaB | two component transcriptional regulator, winged helix family | no data | 31 | 80 |
| Sinorhizobium meliloti 1021 | SMc00794 | | two-component response regulator | strong | 30 | 84 |
| Pseudomonas sp. BP01 | JOY50_RS06165 | | response regulator | no data | 33 | 82 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_02730 | | transcriptional regulator | insig. | 32 | 86 |
| Xanthobacter sp. DMC5 | GFF2318 | | Phyllosphere-induced regulator PhyR | insig. | 31 | 85 |
| Azospirillum brasilense Sp245 | AZOBR_RS12660 | | regulator | no data | 30 | 88 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_1374 | | putative PAS/PAC sensor protein (RefSeq) | sig. | 34 | 76 |
| Escherichia coli BL21 | ECD_02147 | | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein | insig. | 35 | 82 |
| Escherichia fergusonii Becca | EFB2_01635 | | Regulatory protein AtoC | insig. | 35 | 82 |
| Escherichia coli ECOR38 | HEPCGN_22430 | atoC | acetoacetate metabolism transcriptional regulator AtoC | insig. | 35 | 82 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01490 | | Regulatory protein AtoC | insig. | 35 | 82 |
| Escherichia coli Nissle 1917 | ECOLIN_RS12965 | | acetoacetate metabolism transcriptional regulator AtoC | no data | 35 | 82 |
| Escherichia coli BW25113 | b2220 | atoC | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) | insig. | 35 | 82 |
| Caulobacter crescentus NA1000 | CCNA_03591 | | anti-anti sigma factor/receiver protein PhyR | strong | 32 | 84 |
| Caulobacter crescentus NA1000 Δfur | CCNA_03591 | | anti-anti sigma factor/receiver protein PhyR | cofit | 32 | 84 |
| Paraburkholderia graminis OAS925 | ABIE53_005407 | | PAS domain S-box-containing protein | strong | 32 | 82 |
| Azospirillum sp. SherDot2 | MPMX19_03190 | | hypothetical protein | no data | 36 | 85 |
| Azospirillum sp. SherDot2 | MPMX19_02158 | | putative transcriptional regulatory protein pdtaR | no data | 29 | 83 |
| Marinobacter adhaerens HP15 | HP15_2320 | | response regulator receiver protein | insig. | 34 | 85 |
| Pseudomonas putida KT2440 | PP_3484 | | Response regulator receiver protein | strong | 33 | 82 |
| Azospirillum sp. SherDot2 | MPMX19_06040 | | Phyllosphere-induced regulator PhyR | insig. | 31 | 90 |
| Synechocystis sp000284455 PCC 6803 | SGL_RS07850 | | response regulator transcription factor | insig. | 44 | 53 |
| Pseudomonas syringae pv. syringae B728a | Psyr_3084 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | insig. | 31 | 79 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3084 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | insig. | 31 | 79 |
| Pseudomonas stutzeri RCH2 | Psest_0611 | | heavy metal response regulator | strong | 36 | 82 |
| Parabacteroides merdae CL09T00C40 | HMPREF1078_RS12130 | | ATP-binding protein | insig. | 31 | 92 |
| Synechococcus elongatus PCC 7942 | Synpcc7942_2416 | srrA | two component transcriptional regulator, winged helix family | sig. | 30 | 80 |
| Xanthobacter sp. DMC5 | GFF4373 | | Transcriptional regulatory protein OmpR | insig. | 35 | 81 |
| Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1459.1 | | Two-component system regulatory protein | insig. | 33 | 72 |
| Methanococcus maripaludis S2 | MMP_RS04840 | | response regulator | sig. | 28 | 76 |
| Caulobacter crescentus NA1000 | CCNA_00026 | | PAS-family sensor histidine kinase | insig. | 34 | 82 |
| Caulobacter crescentus NA1000 Δfur | CCNA_00026 | | PAS-family sensor histidine kinase | cofit | 34 | 82 |
| Alteromonas macleodii MIT1002 | MIT1002_04223 | | Transcriptional regulatory protein YycF | insig. | 31 | 82 |
| Azospirillum sp. SherDot2 | MPMX19_00501 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 29 | 79 |
| Caulobacter crescentus NA1000 | CCNA_02659 | | two-component receiver domain protein | cofit | 37 | 61 |
| Caulobacter crescentus NA1000 Δfur | CCNA_02659 | | two-component receiver domain protein | cofit | 37 | 61 |
| Pseudomonas sp. BP01 | JOY50_RS24990 | | response regulator transcription factor | insig. | 31 | 85 |
| Desulfovibrio vulgaris Miyazaki F | DvMF_2543 | | response regulator receiver protein (RefSeq) | sig. | 30 | 82 |
| Dickeya dianthicola 67-19 | HGI48_RS16465 | | two-component system response regulator BtsR | insig. | 35 | 83 |
| Lysobacter sp. OAE881 | ABIE51_RS09905 | | ATP-binding protein | insig. | 34 | 86 |
| Pseudomonas sp. SVBP6 | COO64_RS01200 | | LytTR family DNA-binding domain-containing protein | insig. | 32 | 85 |
| Rahnella sp. WP5 | EX31_RS00780 | | two-component system response regulator BtsR | insig. | 32 | 84 |
| Escherichia coli ECRC62 | BNILDI_14185 | btsR | two-component system response regulator BtsR | cofit | 32 | 85 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS00885 | | response regulator | insig. | 31 | 93 |
| Azospirillum sp. SherDot2 | MPMX19_02046 | | Sensor histidine kinase RcsC | insig. | 31 | 84 |