Homologs of LRK55_RS06765 from Rhodanobacter denitrificans MT42

pseudouridine synthase
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase F

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodanobacter denitrificans MT42 LRK55_RS06765 pseudouridine synthase insig. 100 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS07025 pseudouridine synthase insig. 100 100
o Rhodanobacter sp. FW510-T8 OKGIIK_16610 Pseudouridine synthase insig. 93 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS16400 pseudouridine synthase cofit 88 100
o Lysobacter sp. OAE881 ABIE51_RS12720 pseudouridine synthase insig. 71 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1843.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 69 100
  Marinobacter adhaerens HP15 HP15_886 pseudouridine synthase family 1 protein insig. 59 97
  Vibrio cholerae E7946 ATCC 55056 CSW01_11335 23S rRNA pseudouridine(2604) synthase RluF insig. 54 97
o Alteromonas macleodii MIT1002 MIT1002_01776 Ribosomal large subunit pseudouridine synthase F insig. 56 95
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1010 pseudouridine synthase insig. 54 96
  Enterobacter asburiae PDN3 EX28DRAFT_4322 pseudouridine synthase insig. 56 97
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19110 23S rRNA pseudouridine synthase F insig. 53 97
  Enterobacter sp. TBS_079 MPMX20_00237 Dual-specificity RNA pseudouridine synthase RluF insig. 55 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1362 Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) insig. 55 97
  Klebsiella michiganensis M5al BWI76_RS01755 23S rRNA pseudouridine synthase F insig. 56 97
  Escherichia coli ECOR27 NOLOHH_05365 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 54 97
  Escherichia coli ECOR38 HEPCGN_11820 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 54 97
  Escherichia coli ECRC100 OKFHMN_13190 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 54 97
  Escherichia coli ECRC101 MCAODC_03690 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 54 97
  Escherichia coli ECRC102 NIAGMN_10940 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 54 97
  Escherichia coli ECRC62 BNILDI_06155 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 54 97
  Escherichia coli ECRC98 JDDGAC_16815 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 54 97
  Escherichia coli ECRC99 KEDOAH_14970 rluF 23S rRNA pseudouridine(2604) synthase RluF no data 54 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04027 23S rRNA pseudouridine(2604) synthase insig. 54 97
  Serratia liquefaciens MT49 IAI46_21130 23S rRNA pseudouridine(2604) synthase RluF insig. 54 97
  Escherichia fergusonii Becca EFB2_04580 Dual-specificity RNA pseudouridine synthase RluF insig. 54 97
  Escherichia coli Nissle 1917 ECOLIN_RS23225 23S rRNA pseudouridine(2604) synthase RluF insig. 54 97
  Escherichia coli BL21 ECD_03894 23S rRNA pseudouridine(2604) synthase insig. 54 97
  Escherichia coli BW25113 b4022 yjbC 23S rRNA pseudouridine synthase (NCBI) sig. 54 97
  Rahnella sp. WP5 EX31_RS06075 23S rRNA pseudouridine(2604) synthase RluF insig. 54 96
  Pantoea sp. MT58 IAI47_19435 23S rRNA pseudouridine(2604) synthase RluF insig. 53 97
  Erwinia tracheiphila SCR3 LU632_RS22175 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 53 97
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08925 23S rRNA pseudouridine synthase F insig. 50 97
  Serratia liquefaciens MT49 IAI46_19150 23S rRNA pseudouridine(2604) synthase RluF insig. 53 95
o Shewanella sp. ANA-3 Shewana3_0916 pseudouridine synthase, Rsu (RefSeq) insig. 38 97
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08930 hypothetical protein insig. 37 97
o Shewanella loihica PV-4 Shew_3180 pseudouridine synthase (RefSeq) insig. 39 97
o Fusobacterium nucleatum SB010 HUW76_04625 rRNA pseudouridine synthase cofit 35 97
o Shewanella amazonensis SB2B Sama_2937 pseudouridine synthase, Rsu (RefSeq) insig. 36 97
o Desulfovibrio vulgaris Miyazaki F DvMF_0369 pseudouridine synthase (RefSeq) sig. 40 97
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07850 pseudouridine synthase insig. 35 95
  Synechococcus elongatus PCC 7942 Synpcc7942_1010 ribosomal large subunit pseudouridine synthase B strong 36 97
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25065 pseudouridylate synthase no data 35 96
  Phocaeicola dorei CL03T12C01 ABI39_RS08040 pseudouridine synthase no data 36 97
  Bacteroides stercoris CC31F HMPREF1181_RS07005 pseudouridine synthase no data 34 97
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00420 pseudouridine synthase no data 36 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18660 pseudouridine synthase no data 36 96
  Dickeya dadantii 3937 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA insig. 33 97
  Pantoea sp. MT58 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA sig. 34 100
  Castellaniella sp019104865 MT123 ABCV34_RS03070 pseudouridine synthase insig. 35 95
  Dickeya dianthicola ME23 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA insig. 33 97
  Dickeya dianthicola 67-19 HGI48_RS09200 16S rRNA pseudouridine(516) synthase RsuA insig. 33 97
  Bacteroides thetaiotaomicron VPI-5482 BT3872 ribosomal large subunit pseudouridine synthase B (NCBI ptt file) no data 34 97
  Variovorax sp. OAS795 ABID97_RS00980 pseudouridine synthase strong 33 95
  Acidovorax sp. GW101-3H11 Ac3H11_4641 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 31 95
  Sinorhizobium meliloti 1021 SM_b20024 ribosomal large subunit pseudouridine synthase B insig. 37 94
  Pectobacterium carotovorum WPP14 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA insig. 32 96
  Variovorax sp. SCN45 GFF3530 Pseudouridine synthase insig. 32 95
  Kangiella aquimarina DSM 16071 B158DRAFT_2311 ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-) strong 31 97
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11165 pseudouridine synthase no data 33 97
  Rhizobium sp. OAE497 ABIE40_RS15330 pseudouridine synthase cofit 36 95
o Caulobacter crescentus NA1000 CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 35 98
o Caulobacter crescentus NA1000 Δfur CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 35 98
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0719 pseudouridine synthase no data 33 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 33 97
  Enterobacter asburiae PDN3 EX28DRAFT_0378 pseudouridine synthase insig. 32 99
  Erwinia tracheiphila SCR3 LU632_RS17595 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 32 97
  Serratia liquefaciens MT49 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA insig. 32 96
  Rahnella sp. WP5 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA insig. 31 99
  Escherichia coli BL21 ECD_02113 16S rRNA pseudouridine(516) synthase insig. 32 97
  Escherichia fergusonii Becca EFB2_01673 Ribosomal small subunit pseudouridine synthase A insig. 32 97
  Escherichia coli ECOR27 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 32 97
  Escherichia coli ECRC100 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA cofit 32 97
  Escherichia coli ECRC101 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 32 97
  Escherichia coli ECRC102 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 32 97
  Escherichia coli ECRC62 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA cofit 32 97
  Escherichia coli ECRC98 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA cofit 32 97
  Escherichia coli ECRC99 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA no data 32 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A insig. 32 97
  Escherichia coli Nissle 1917 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA no data 32 97
  Escherichia coli BW25113 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) strong 32 97
  Dechlorosoma suillum PS Dsui_2759 pseudouridine synthase family protein insig. 33 95
  Escherichia coli ECOR38 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA cofit 32 97
  Enterobacter sp. TBS_079 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A insig. 32 99
  Magnetospirillum magneticum AMB-1 AMB_RS12445 rRNA pseudouridine synthase insig. 33 96
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17510 pseudouridylate synthase strong 32 96
  Rhodanobacter sp. FW510-T8 OKGIIK_06590 Pseudouridine synthase insig. 34 95
  Shewanella amazonensis SB2B Sama_2614 pseudouridine synthase, Rsu (RefSeq) insig. 31 96
  Klebsiella michiganensis M5al BWI76_RS19810 16S rRNA pseudouridine(516) synthase no data 31 96
  Fusobacterium nucleatum SB010 HUW76_04445 rRNA pseudouridine synthase cofit 28 93
  Burkholderia phytofirmans PsJN BPHYT_RS12155 RNA-binding protein S4 insig. 32 95
  Pseudomonas sp. S08-1 OH686_20820 LSU rRNA pseudouridine(2605) synthase cofit 30 95
  Burkholderia phytofirmans PsJN BPHYT_RS08050 pseudouridine synthase no data 31 97
  Acinetobacter radioresistens SK82 MPMX26_02450 Ribosomal large subunit pseudouridine synthase B strong 31 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08410 pseudouridine synthase insig. 34 95
  Herbaspirillum seropedicae SmR1 HSERO_RS10860 RNA pseudouridylate synthase insig. 34 95
  Rhodanobacter denitrificans MT42 LRK55_RS00435 pseudouridine synthase insig. 34 95
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00665 rRNA pseudouridine synthase insig. 34 95
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF343 tRNA pseudouridine synthase A (EC 4.2.1.70) cofit 32 95
  Pseudomonas stutzeri RCH2 Psest_1999 pseudouridine synthase insig. 30 95