Homologs of HMPREF1078_RS01360 from Parabacteroides merdae CL09T00C40

efflux RND transporter permease subunit
SEED: RND efflux system, inner membrane transporter CmeB

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS01360 efflux RND transporter permease subunit cofit 100 100
o Bacteroides thetaiotaomicron VPI-5482 BT2941 multidrug resistance protein mexB (multidrug-efflux protein) (NCBI ptt file) insig. 83 99
o Bacteroides ovatus ATCC 8483 BACOVA_02874 RND transporter, HAE1 family insig. 83 99
o Phocaeicola dorei CL03T12C01 ABI39_RS08280 efflux RND transporter permease subunit insig. 60 100
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00675 efflux RND transporter permease subunit insig. 60 100
  Bacteroides ovatus ATCC 8483 BACOVA_01389 RND transporter, HAE1 family insig. 61 98
  Bacteroides thetaiotaomicron VPI-5482 BT1966 multidrug resistance protein, AcrB/AcrD family (NCBI ptt file) insig. 61 97
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02100 efflux RND transporter permease subunit strong 53 99
  Phocaeicola dorei CL03T12C01 ABI39_RS01285 efflux RND transporter permease subunit cofit 53 99
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13660 efflux RND transporter permease subunit cofit 53 99
  Bacteroides thetaiotaomicron VPI-5482 BT3338 RND efflux system, inner membrane component BipB (from data) strong 52 98
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS23010 hydrophobe/amphiphile efflux-1 family RND transporter strong 53 99
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12545 efflux RND transporter permease subunit cofit 47 99
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS05045 hydrophobe/amphiphile efflux-1 family RND transporter strong 45 97
  Cellulophaga baltica 18 M666_RS04025 efflux RND transporter permease subunit insig. 46 97
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS08425 efflux RND transporter permease subunit insig. 44 98
  Phocaeicola dorei CL03T12C01 ABI39_RS18010 efflux RND transporter permease subunit insig. 44 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS06015 efflux RND transporter permease subunit insig. 44 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2781 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 42 95
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06875 hydrophobe/amphiphile efflux-1 family RND transporter strong 41 96
  Cellulophaga baltica 18 M666_RS00650 efflux RND transporter permease subunit insig. 40 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2472 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 39 96
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08725 hydrophobe/amphiphile efflux-1 family RND transporter insig. 40 96
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_03655 multidrug efflux RND transporter permease subunit strong 41 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3740 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 40 98
  Desulfovibrio vulgaris Miyazaki F DvMF_2163 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) strong 40 97
  Desulfovibrio vulgaris Hildenborough JW710 DVU0061 multidrug resistance protein, putative (TIGR) strong 40 96
  Shewanella loihica PV-4 Shew_1164 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) insig. 40 97
  Pseudomonas sp. S08-1 OH686_07370 RND efflux system, inner membrane transporter cofit 39 97
  Sinorhizobium meliloti 1021 SMa1662 Cation/multidrug efflux pump insig. 38 97
o Synechococcus elongatus PCC 7942 Synpcc7942_2369 acrF Hydrophobe/amphiphile efflux-1 HAE1 strong 41 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS03050 efflux RND transporter permease subunit cofit 41 96
  Methylophilus sp. DMC18 GFF2276 Efflux pump membrane transporter BepE strong 40 96
  Paraburkholderia sabiae LMG 24235 QEN71_RS02525 efflux RND transporter permease subunit strong 39 96
  Marinobacter adhaerens HP15 HP15_933 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family insig. 39 97
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02440 multidrug efflux RND transporter permease subunit insig. 38 97
  Phocaeicola dorei CL03T12C01 ABI39_RS01690 multidrug efflux RND transporter permease subunit insig. 38 97
  Dechlorosoma suillum PS Dsui_1871 hydrophobe/amphiphile efflux-1 (HAE1) family transporter strong 39 96
  Paraburkholderia graminis OAS925 ABIE53_003408 multidrug efflux pump strong 38 99
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1794.1 RND efflux system, inner membrane transporter CmeB insig. 38 97
  Pseudomonas aeruginosa PA14 IKLFDK_23290 multidrug efflux RND transporter permease subunit MexB cofit 38 96
  Shewanella loihica PV-4 Shew_3796 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) insig. 40 98
  Herbaspirillum seropedicae SmR1 HSERO_RS23055 multidrug transporter insig. 37 98
  Pseudomonas simiae WCS417 PS417_06770 multidrug transporter strong 38 96
  Burkholderia phytofirmans PsJN BPHYT_RS16170 multidrug efflux RND transporter permease subunit no data 38 97
  Klebsiella pneumoniae MKP103 KDGMDA_14835 acriflavine resistance protein B strong 38 95
  Alteromonas macleodii MIT1002 MIT1002_00867 Efflux pump membrane transporter BepE insig. 38 97
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04170 multidrug efflux pump strong 38 96
  Pseudomonas syringae pv. syringae B728a Psyr_2865 Hydrophobe/amphiphile efflux-1 HAE1 insig. 38 96
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2865 Hydrophobe/amphiphile efflux-1 HAE1 insig. 38 96
  Pseudomonas fluorescens FW300-N2C3 AO356_00695 multidrug transporter insig. 39 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0541 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family cofit 39 96
  Herbaspirillum seropedicae SmR1 HSERO_RS02410 acriflavine resistance protein B strong 38 96
  Paraburkholderia sabiae LMG 24235 QEN71_RS29865 efflux RND transporter permease subunit insig. 38 96
  Pseudomonas sp. S08-1 OH686_16050 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) cofit 37 96
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_222 RND efflux system, inner membrane transporter CmeB insig. 38 96
  Shewanella oneidensis MR-1 SO4692 AcrB/AcrD/AcrF family protein (NCBI ptt file) strong 37 97
  Sphingobium sp. HT1-2 GFF3951 RND efflux system, inner membrane transporter insig. 38 95
  Klebsiella michiganensis M5al BWI76_RS06775 multidrug efflux RND transporter permease subunit strong 38 95
  Shewanella sp. ANA-3 Shewana3_4045 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) strong 37 96
  Bacteroides ovatus ATCC 8483 BACOVA_02607 RND transporter, HAE1 family cofit 37 97
  Shewanella amazonensis SB2B Sama_3554 AcrB/AcrD/AcrF family protein (RefSeq) strong 37 97
  Bacteroides stercoris CC31F HMPREF1181_RS14290 efflux RND transporter permease subunit insig. 38 97
  Variovorax sp. SCN45 GFF5990 RND efflux system, inner membrane transporter insig. 37 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4379 RND efflux system, inner membrane transporter CmeB sig. 38 95
  Cupriavidus basilensis FW507-4G11 RR42_RS32420 multidrug efflux RND transporter permease subunit insig. 38 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2116 RND efflux system, inner membrane transporter CmeB insig. 38 95
  Enterobacter asburiae PDN3 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family cofit 38 95
  Bacteroides thetaiotaomicron VPI-5482 BT0886 putative cation efflux pump (NCBI ptt file) sig. 37 97
  Klebsiella pneumoniae MKP103 KDGMDA_27695 multidrug efflux RND transporter permease AcrD insig. 37 96
  Bosea sp. OAE506 ABIE41_RS01595 efflux RND transporter permease subunit insig. 38 97
  Escherichia coli BL21 ECD_02361 aminoglycoside/multidrug efflux system insig. 37 96
  Escherichia coli Nissle 1917 ECOLIN_RS14090 multidrug efflux RND transporter permease AcrD insig. 37 96
  Escherichia coli BW25113 b2470 acrD aminoglycoside/multidrug efflux system (NCBI) strong 37 96
  Klebsiella michiganensis M5al BWI76_RS25585 multidrug efflux RND transporter permease subunit insig. 38 95
  Enterobacter sp. TBS_079 MPMX20_01064 Multidrug efflux pump subunit AcrB strong 38 95
  Enterobacter asburiae PDN3 EX28DRAFT_0191 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family insig. 37 96
  Acinetobacter baumannii LAC-4 RR41_RS03865 multidrug efflux RND transporter permease subunit AdeJ no data 36 97
  Escherichia fergusonii Becca EFB2_01418 Multidrug efflux pump subunit AcrB insig. 37 96
  Escherichia coli ECOR27 NOLOHH_13650 acrD multidrug efflux RND transporter permease AcrD insig. 37 96
  Escherichia coli ECOR38 HEPCGN_21140 acrD multidrug efflux RND transporter permease AcrD insig. 37 96
  Escherichia coli ECRC100 OKFHMN_21970 acrD multidrug efflux RND transporter permease AcrD cofit 37 96
  Escherichia coli ECRC101 MCAODC_12500 acrD multidrug efflux RND transporter permease AcrD insig. 37 96
  Escherichia coli ECRC102 NIAGMN_19740 acrD multidrug efflux RND transporter permease AcrD cofit 37 96
  Escherichia coli ECRC62 BNILDI_12460 acrD multidrug efflux RND transporter permease AcrD insig. 37 96
  Escherichia coli ECRC98 JDDGAC_25915 acrD multidrug efflux RND transporter permease AcrD insig. 37 96
  Escherichia coli ECRC99 KEDOAH_06250 acrD multidrug efflux RND transporter permease AcrD no data 37 96
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01261 Multidrug efflux pump subunit AcrB insig. 37 96
  Desulfovibrio vulgaris Miyazaki F DvMF_0036 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) insig. 36 99
  Ralstonia solanacearum GMI1000 RS_RS21030 multidrug efflux RND transporter permease subunit insig. 38 96
  Variovorax sp. SCN45 GFF3821 RND efflux system, inner membrane transporter insig. 37 97
  Klebsiella pneumoniae MKP103 KDGMDA_06465 hydrophobe/amphiphile efflux-1 family RND transporter insig. 38 95
  Shewanella loihica PV-4 Shew_0032 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) strong 37 95
  Methylophilus sp. DMC18 GFF2593 Multidrug efflux pump subunit AcrB insig. 37 96
  Sinorhizobium meliloti 1021 SM_b21498 acriflavin resistance protein insig. 38 97
  Pseudomonas stutzeri RCH2 Psest_0310 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family strong 37 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2188 RND efflux system, inner membrane transporter CmeB cofit 37 96
  Enterobacter sp. TBS_079 MPMX20_03331 Multidrug efflux pump subunit AcrB insig. 37 96
  Escherichia coli Nissle 1917 ECOLIN_RS02750 efflux RND transporter permease AcrB sig. 37 95
  Pseudomonas sp. SVBP6 COO64_RS26275 efflux RND transporter permease subunit cofit 37 96