| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF7194 | | ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) | insig. | 100 | 100 |
| o | Bosea sp. OAE506 | ABIE41_RS09120 | | ABC transporter permease | insig. | 63 | 95 |
| o | Xanthobacter sp. DMC5 | GFF1218 | | putative D,D-dipeptide transport system permease protein DdpC | insig. | 66 | 87 |
| | Bosea sp. OAE506 | ABIE41_RS12200 | | ABC transporter permease | insig. | 58 | 96 |
| | Xanthobacter sp. DMC5 | GFF1278 | | putative D,D-dipeptide transport system permease protein DdpC | insig. | 57 | 94 |
| o | Rhodopseudomonas palustris CGA009 | TX73_007565 | | ABC transporter permease | insig. | 57 | 93 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02232 | | putative D,D-dipeptide transport system permease protein DdpC | insig. | 44 | 95 |
| | Agrobacterium fabrum C58 | Atu2516 | | ABC transporter, membrane spanning protein (dipeptide) | insig. | 43 | 94 |
| | Serratia liquefaciens MT49 | IAI46_12035 | | D,D-dipeptide ABC transporter permease | insig. | 45 | 96 |
| | Escherichia coli BL21 | ECD_01443 | | D,D-dipeptide ABC transporter permease | insig. | 44 | 95 |
| | Escherichia coli ECOR27 | NOLOHH_18970 | ddpC | D,D-dipeptide ABC transporter permease | insig. | 44 | 95 |
| | Escherichia coli ECOR38 | HEPCGN_26465 | ddpC | D,D-dipeptide ABC transporter permease | insig. | 44 | 95 |
| | Escherichia coli ECRC100 | OKFHMN_01330 | ddpC | D,D-dipeptide ABC transporter permease | cofit | 44 | 95 |
| | Escherichia coli ECRC102 | NIAGMN_25460 | ddpC | D,D-dipeptide ABC transporter permease | insig. | 44 | 95 |
| | Escherichia coli ECRC62 | BNILDI_17455 | ddpC | D,D-dipeptide ABC transporter permease | cofit | 44 | 95 |
| | Escherichia coli ECRC98 | JDDGAC_03820 | ddpC | D,D-dipeptide ABC transporter permease | insig. | 44 | 95 |
| | Escherichia coli ECRC99 | KEDOAH_27110 | ddpC | D,D-dipeptide ABC transporter permease | no data | 44 | 95 |
| | Rahnella sp. WP5 | EX31_RS10230 | | D,D-dipeptide ABC transporter permease | insig. | 43 | 93 |
| | Escherichia coli ECRC101 | MCAODC_16610 | ddpC | D,D-dipeptide ABC transporter permease | insig. | 44 | 95 |
| | Enterobacter sp. TBS_079 | MPMX20_02358 | | putative D,D-dipeptide transport system permease protein DdpC | insig. | 43 | 99 |
| | Escherichia coli BW25113 | b1485 | ddpC | D-ala-D-ala transporter subunit (NCBI) | insig. | 44 | 95 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1114 | | ABC-type dipeptide/oligopeptide/nickel transport systems, permease components | insig. | 44 | 94 |
| | Dickeya dianthicola 67-19 | HGI48_RS12290 | | ABC transporter permease subunit | insig. | 44 | 96 |
| | Dickeya dianthicola ME23 | DZA65_RS12730 | | ABC transporter permease subunit | cofit | 44 | 96 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS10990 | | ABC transporter permease | insig. | 41 | 96 |
| | Rhizobium sp. OAE497 | ABIE40_RS23430 | | ABC transporter permease | insig. | 46 | 93 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02397 | | putative D,D-dipeptide transport system permease protein DdpC | cofit | 43 | 94 |
| | Pantoea sp. MT58 | IAI47_04590 | | ABC transporter permease | insig. | 45 | 93 |
| | Variovorax sp. SCN45 | GFF4934 | | ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) | insig. | 47 | 93 |
| | Rahnella sp. WP5 | EX31_RS09360 | | ABC transporter permease | insig. | 44 | 93 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS14585 | | ABC transporter permease | cofit | 45 | 93 |
| | Azospirillum sp. SherDot2 | MPMX19_00230 | | putative D,D-dipeptide transport system permease protein DdpC | insig. | 43 | 85 |
| | Dickeya dadantii 3937 | DDA3937_RS12200 | | ABC transporter permease | insig. | 45 | 87 |
| | Klebsiella michiganensis M5al | BWI76_RS26510 | | nickel ABC transporter permease subunit NikC | insig. | 44 | 95 |
| | Azospirillum brasilense Sp245 | AZOBR_RS02620 | | D-ala-D-ala transporter subunit | insig. | 42 | 85 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_07370 | | nickel ABC transporter permease subunit NikC | insig. | 46 | 88 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5103 | | Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) | no data | 41 | 96 |
| | Erwinia amylovora T8 | OLJFJH_18335 | | peptide ABC transporter permease | insig. | 42 | 96 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_15940 | | peptide ABC transporter permease | insig. | 44 | 96 |
| | Dickeya dadantii 3937 | DDA3937_RS03510 | | ABC transporter permease | insig. | 40 | 96 |
| | Dickeya dianthicola 67-19 | HGI48_RS06900 | | ABC transporter permease | insig. | 43 | 97 |
| | Dickeya dianthicola ME23 | DZA65_RS07245 | | ABC transporter permease | insig. | 43 | 96 |
| | Rahnella sp. WP5 | EX31_RS02040 | | ABC transporter permease subunit | insig. | 41 | 92 |
| | Pectobacterium carotovorum WPP14 | HER17_RS01865 | | ABC transporter permease | cofit | 41 | 96 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS17275 | | ABC transporter permease subunit | insig. | 41 | 90 |
| | Rahnella sp. WP5 | EX31_RS00370 | | ABC transporter permease | insig. | 40 | 94 |
| | Dickeya dadantii 3937 | DDA3937_RS06920 | | ABC transporter permease | insig. | 43 | 96 |
| | Rahnella sp. WP5 | EX31_RS07240 | | ABC transporter permease | insig. | 38 | 96 |
| | Ralstonia solanacearum GMI1000 | RS_RS06930 | | glutathione ABC transporter permease GsiD | cofit | 41 | 96 |
| | Dickeya dianthicola 67-19 | HGI48_RS03610 | | ABC transporter permease | insig. | 39 | 96 |
| | Dickeya dianthicola ME23 | DZA65_RS03730 | | ABC transporter permease | insig. | 39 | 96 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_00225 | | Nickel transport system permease protein NikC | insig. | 44 | 88 |
| | Pantoea sp. MT58 | IAI47_10090 | | ABC transporter permease | insig. | 41 | 90 |
| | Pantoea sp. MT58 | IAI47_11330 | | ABC transporter permease subunit | insig. | 41 | 90 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS06060 | | ABC transporter permease | cofit | 41 | 90 |
| | Agrobacterium fabrum C58 | Atu3458 | | ABC transporter permease | insig. | 41 | 87 |
| | Rhodospirillum rubrum S1H | Rru_A2358 | | Binding-protein-dependent transport systems inner membrane component (NCBI) | cofit | 40 | 94 |
| | Escherichia coli BL21 | ECD_03327 | | nickel ABC transporter permease | insig. | 44 | 88 |
| | Escherichia coli ECOR27 | NOLOHH_08435 | nikC | nickel ABC transporter permease subunit NikC | insig. | 44 | 88 |
| | Escherichia coli ECOR38 | HEPCGN_15460 | nikC | nickel ABC transporter permease subunit NikC | insig. | 44 | 88 |
| | Escherichia coli ECRC100 | OKFHMN_16540 | nikC | nickel ABC transporter permease subunit NikC | cofit | 44 | 88 |
| | Escherichia coli ECRC101 | MCAODC_07060 | nikC | nickel ABC transporter permease subunit NikC | insig. | 44 | 88 |
| | Escherichia coli ECRC102 | NIAGMN_14310 | nikC | nickel ABC transporter permease subunit NikC | insig. | 44 | 88 |
| | Escherichia coli ECRC62 | BNILDI_03080 | nikC | nickel ABC transporter permease subunit NikC | insig. | 44 | 88 |
| | Escherichia coli ECRC98 | JDDGAC_20170 | nikC | nickel ABC transporter permease subunit NikC | insig. | 44 | 88 |
| | Escherichia coli ECRC99 | KEDOAH_11600 | nikC | nickel ABC transporter permease subunit NikC | no data | 44 | 88 |
| | Escherichia coli BW25113 | b3478 | nikC | nickel transporter subunit (NCBI) | sig. | 44 | 88 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21865 | | nickel ABC transporter permease | insig. | 42 | 93 |
| | Klebsiella michiganensis M5al | BWI76_RS19310 | | ABC transporter permease | sig. | 39 | 96 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_26355 | | D-ala-D-ala transporter subunit | insig. | 39 | 96 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c16290 | | dipeptide transport system permease protein DppC | insig. | 42 | 88 |
| | Azospirillum sp. SherDot2 | MPMX19_03402 | | putative D,D-dipeptide transport system permease protein DdpC | insig. | 40 | 97 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2397 | | ABC-type dipeptide/oligopeptide/nickel transport systems, permease components | cofit | 44 | 96 |
| | Serratia liquefaciens MT49 | IAI46_15645 | | ABC transporter permease | insig. | 43 | 91 |
| | Dickeya dianthicola 67-19 | HGI48_RS00565 | | ABC transporter permease | insig. | 38 | 95 |
| | Azospirillum sp. SherDot2 | MPMX19_04007 | | Glutathione transport system permease protein GsiD | insig. | 44 | 87 |
| | Escherichia fergusonii Becca | EFB2_00338 | | Nickel transport system permease protein NikC | insig. | 44 | 88 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS19880 | | nickel ABC transporter permease subunit NikC | no data | 44 | 88 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS26485 | | nickel ABC transporter permease subunit NikC | no data | 44 | 88 |
| | Escherichia fergusonii Becca | EFB2_04508 | | putative D,D-dipeptide transport system permease protein DdpC | insig. | 42 | 96 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS23610 | | ABC transporter permease | insig. | 42 | 96 |
| | Pseudomonas sp. DMC3 | GFF5021 | | Dipeptide transport system permease protein DppC | cofit | 41 | 94 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_07265 | | peptide transporter | strong | 41 | 94 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3312 | | Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) | strong | 41 | 94 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3424 | | Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) | sig. | 42 | 92 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS00255 | | glutathione ABC transporter permease GsiD | insig. | 40 | 96 |
| | Ralstonia solanacearum UW163 | UW163_RS13585 | | glutathione ABC transporter permease GsiD | insig. | 40 | 96 |
| | Bosea sp. OAE506 | ABIE41_RS23530 | | nickel transporter permease | insig. | 41 | 96 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_5056 | | Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) | strong | 41 | 94 |
| | Pseudomonas sp. RS175 | PFR28_00126 | | Dipeptide transport system permease protein DppC | sig. | 40 | 94 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS04095 | | ABC transporter permease subunit | insig. | 40 | 94 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS04095 | | ABC transporter permease subunit | sig. | 40 | 94 |
| | Pseudomonas sp. SVBP6 | COO64_RS04095 | | ABC transporter permease subunit | insig. | 41 | 94 |
| | Rahnella sp. WP5 | EX31_RS09190 | | ABC transporter permease | insig. | 39 | 95 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c28420 | | putative D,D-dipeptide transport system permease protein | sig. | 38 | 95 |
| | Pseudomonas segetis P6 | ACVTMO_RS19265 | | ABC transporter permease subunit | sig. | 41 | 94 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01015 | | Dipeptide transport system permease protein DppC | cofit | 40 | 94 |
| | Pectobacterium carotovorum WPP14 | HER17_RS20880 | | ABC transporter permease subunit | insig. | 40 | 93 |
| | Pseudomonas simiae WCS417 | PS417_04055 | | peptide transporter | strong | 41 | 94 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1125 | | Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) | insig. | 40 | 94 |