| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Xanthobacter sp. DMC5 | GFF4286 | | Phytochrome-like protein cph1 | insig. | 100 | 100 |
| o | Rhizobium sp. OAE497 | ABIE40_RS26950 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 51 | 97 |
| o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS15480 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 49 | 97 |
| | Rhodopseudomonas palustris CGA009 | TX73_015620 | | ATP-binding protein | insig. | 33 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_04272 | | Phytochrome-like protein cph1 | insig. | 33 | 92 |
| | Agrobacterium fabrum C58 | Atu2165 | | bacteriophytochrome protein | insig. | 33 | 93 |
| | Rhodopseudomonas palustris CGA009 | TX73_005095 | | HWE histidine kinase domain-containing protein | insig. | 35 | 93 |
| | Rhizobium sp. OAE497 | ABIE40_RS14515 | | HWE histidine kinase domain-containing protein | insig. | 33 | 97 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30160 | | chemotaxis protein CheY | insig. | 34 | 97 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS03395 | | ATP-binding protein | strong | 29 | 92 |
| | Sphingobium sp. HT1-2 | GFF5140 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 32 | 98 |
| | Pseudomonas putida KT2440 | PP_2356 | | putative Phytochrome family protein | strong | 32 | 91 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS14030 | | ATP-binding protein | cofit | 31 | 95 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01748 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 33 | 87 |
| | Pseudomonas sp. BP01 | JOY50_RS10835 | | ATP-binding protein | insig. | 33 | 91 |
| | Sphingobium sp. HT1-2 | GFF650 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 33 | 95 |
| | Rhodopseudomonas palustris CGA009 | TX73_015615 | | ATP-binding protein | insig. | 32 | 92 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.5288.1 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 37 | 66 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c28680 | | putative bacteriophytochrome | insig. | 32 | 94 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 30 | 91 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3504 | | GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | insig. | 30 | 91 |
| | Pseudomonas sp. DMC3 | GFF1005 | | Phytochrome-like protein cph1 | cofit | 30 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04813 | | Phytochrome-like protein cph1 | cofit | 29 | 97 |
| | Pseudomonas orientalis W4I3 | QF045_RS25570 | | ATP-binding protein | cofit | 31 | 98 |
| | Pseudomonas stutzeri RCH2 | Psest_4345 | | Bacteriophytochrome (light-regulated signal transduction histidine kinase) | strong | 32 | 91 |
| | Pseudomonas simiae WCS417 | PS417_23325 | | histidine kinase | insig. | 30 | 97 |
| | Agrobacterium fabrum C58 | Atu1990 | | bacteriophytochrome protein | insig. | 34 | 75 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS25130 | | GAF domain-containing protein | insig. | 30 | 97 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS25130 | | GAF domain-containing protein | sig. | 30 | 97 |
| | Bosea sp. OAE506 | ABIE41_RS08275 | | HWE histidine kinase domain-containing protein | insig. | 33 | 88 |
| | Pseudomonas sp. BP01 | JOY50_RS14150 | | HWE histidine kinase domain-containing protein | insig. | 31 | 97 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30860 | | sensor histidine kinase | strong | 35 | 75 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_09865 | | histidine kinase | sig. | 31 | 87 |
| | Pseudomonas putida KT2440 | PP_3364 | | Response regulator | insig. | 31 | 97 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS06325 | | ATPase | strong | 37 | 65 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS10565 | | ATP-binding protein | cofit | 34 | 68 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3852 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | sig. | 33 | 73 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12460 | | light-regulated signal transduction histidine kinase | insig. | 30 | 97 |
| | Variovorax sp. SCN45 | GFF1412 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 32 | 91 |
| | Azospirillum sp. SherDot2 | MPMX19_01598 | | hypothetical protein | insig. | 33 | 95 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS08760 | | histidine kinase | strong | 27 | 88 |
| | Variovorax sp. SCN45 | GFF651 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | cofit | 32 | 93 |
| | Pseudomonas sp. RS175 | PFR28_04918 | | Phytochrome-like protein cph1 | insig. | 34 | 73 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_05925 | | hypothetical protein | cofit | 29 | 97 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 30 | 92 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2385 | | Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase | insig. | 30 | 92 |
| | Lysobacter sp. OAE881 | ABIE51_RS17880 | | GAF domain-containing protein | insig. | 34 | 75 |
| | Rhodopseudomonas palustris CGA009 | TX73_000630 | | ATP-binding protein | insig. | 32 | 81 |
| | Rhodopseudomonas palustris CGA009 | TX73_007660 | | GAF domain-containing protein | cofit | 33 | 73 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_08315 | | PAS sensor protein | sig. | 30 | 67 |
| | Rhodospirillum rubrum S1H | Rru_A2235 | | Multi-sensor Signal Transduction Histidine Kinase (NCBI) | strong | 35 | 65 |
| | Alteromonas macleodii MIT1002 | MIT1002_02965 | | Phytochrome-like protein cph1 | insig. | 27 | 72 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS28065 | bphP;inference=COORDINATES | bacteriophytochrome BphP | insig. | 32 | 67 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS47575 | bphP;inference=COORDINATES | bacteriophytochrome BphP | insig. | 32 | 67 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS16825 | | hypothetical protein | insig. | 32 | 66 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_21205 | | bacteriophytochrome BphP | insig. | 32 | 67 |
| | Alteromonas macleodii MIT1002 | MIT1002_03619 | | Phytochrome-like protein cph1 | insig. | 27 | 98 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS02225 | | ATP-binding protein | strong | 27 | 80 |
| | Agrobacterium fabrum C58 | Atu1984 | | two component sensor kinase | insig. | 35 | 30 |
| | Azospirillum sp. SherDot2 | MPMX19_02386 | | hypothetical protein | insig. | 33 | 31 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS09740 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | strong | 40 | 25 |
| | Rhodopseudomonas palustris CGA009 | TX73_012580 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | cofit | 37 | 27 |
| | Rhizobium sp. OAE497 | ABIE40_RS11240 | | response regulator | cofit | 39 | 24 |
| | Bosea sp. OAE506 | ABIE41_RS11565 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 39 | 26 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0888 | | response regulator (TIGR) | sig. | 36 | 27 |
| | Azospirillum sp. SherDot2 | MPMX19_05613 | | Protein-glutamate methylesterase/protein-glutamine glutaminase | insig. | 35 | 27 |
| | Rhodospirillum rubrum S1H | Rru_A0664 | | Signal Transduction Histidine Kinase (NCBI) | insig. | 39 | 24 |
| | Xanthobacter sp. DMC5 | GFF1743 | | Sensor histidine kinase RcsC | insig. | 38 | 23 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19195 | | hypothetical protein | insig. | 31 | 31 |
| | Cellulophaga baltica 18 | M666_RS20120 | | sensor histidine kinase | strong | 28 | 30 |
| | Azospirillum brasilense Sp245 | AZOBR_RS26870 | | chemotaxis protein CheY | insig. | 33 | 27 |
| | Azospirillum brasilense Sp245 | AZOBR_RS20805 | | hypothetical protein | strong | 38 | 26 |
| | Xanthobacter sp. DMC5 | GFF4115 | | hypothetical protein | insig. | 35 | 26 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS01560 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | cofit | 31 | 29 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS14770 | | sensor histidine kinase | no data | 32 | 27 |
| | Rhodospirillum rubrum S1H | Rru_A3288 | | Signal Transduction Histidine Kinase (NCBI) | no data | 39 | 21 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0504 | | Signal transduction histidine kinase | insig. | 29 | 31 |
| | Bosea sp. OAE506 | ABIE41_RS11385 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 32 | 27 |
| | Azospirillum brasilense Sp245 | AZOBR_RS26000 | | histidine kinase | strong | 37 | 22 |
| | Azospirillum sp. SherDot2 | MPMX19_06307 | | hypothetical protein | insig. | 33 | 28 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3834 | | signal transduction histidine kinase (RefSeq) | insig. | 32 | 29 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS06075 | | PAS domain S-box protein | insig. | 28 | 31 |
| | Cellulophaga baltica 18 | M666_RS13720 | | sensor histidine kinase | strong | 36 | 19 |
| | Rhodopseudomonas palustris CGA009 | TX73_006780 | | sensor histidine kinase | insig. | 34 | 27 |
| | Bosea sp. OAE506 | ABIE41_RS06935 | | CHASE3 domain-containing protein | insig. | 31 | 32 |
| | Caulobacter crescentus NA1000 | CCNA_03588 | | two-component sensor histidine kinase PhyK | strong | 31 | 27 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03588 | | two-component sensor histidine kinase PhyK | cofit | 31 | 27 |
| | Azospirillum brasilense Sp245 | AZOBR_RS26960 | | hypothetical protein | insig. | 33 | 31 |
| | Cellulophaga baltica 18 | M666_RS10530 | | sensor histidine kinase | strong | 29 | 28 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS15220 | | diguanylate cyclase | insig. | 28 | 47 |
| | Bosea sp. OAE506 | ABIE41_RS23040 | | PAS domain-containing sensor histidine kinase | insig. | 33 | 27 |
| | Bosea sp. OAE506 | ABIE41_RS00490 | | PAS domain-containing protein | insig. | 32 | 25 |
| | Cellulophaga baltica 18 | M666_RS12535 | | sensor histidine kinase | insig. | 30 | 22 |
| | Azospirillum brasilense Sp245 | AZOBR_RS02955 | | histidine kinase | insig. | 30 | 32 |
| | Azospirillum sp. SherDot2 | MPMX19_02870 | | Serine/threonine-protein kinase PknD | insig. | 34 | 27 |
| | Azospirillum sp. SherDot2 | MPMX19_04972 | | hypothetical protein | insig. | 33 | 30 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS10270 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | cofit | 36 | 26 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1419 | | signal transduction histidine kinase (RefSeq) | cofit | 32 | 24 |
| | Bifidobacterium breve UCC2003 | BBR_RS14175 | | Sensory transduction protein kinase | no data | 30 | 32 |
| | Rhodopseudomonas palustris CGA009 | TX73_016065 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 34 | 24 |
| | Pseudomonas sp. BP01 | JOY50_RS07885 | | PAS domain-containing protein | insig. | 30 | 29 |
| | Azospirillum sp. SherDot2 | MPMX19_00958 | | hypothetical protein | insig. | 31 | 25 |
| | Rhodospirillum rubrum S1H | Rru_A2752 | | Signal Transduction Histidine Kinase (NCBI) | insig. | 36 | 27 |
| | Azospirillum sp. SherDot2 | MPMX19_05067 | | hypothetical protein | insig. | 29 | 29 |
| | Azospirillum brasilense Sp245 | AZOBR_RS03905 | | hypothetical protein | insig. | 31 | 29 |
| | Rhizobium sp. OAE497 | ABIE40_RS27435 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 33 | 25 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS19825 | | signal transduction histidine kinase | insig. | 31 | 29 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c27060 | | putative signal transduction histidine kinase | strong | 32 | 24 |
| | Azospirillum sp. SherDot2 | MPMX19_02374 | | hypothetical protein | insig. | 27 | 31 |
| | Azospirillum brasilense Sp245 | AZOBR_RS22025 | | histidine kinase | strong | 31 | 26 |
| | Mycobacterium tuberculosis H37Rv | Rv3220c | | Probable two component sensor kinase | strong | 34 | 23 |
| | Azospirillum sp. SherDot2 | MPMX19_06041 | | hypothetical protein | insig. | 34 | 22 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS10405 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 29 | 28 |
| | Azospirillum sp. SherDot2 | MPMX19_05696 | | Blue-light-activated histidine kinase 2 | insig. | 29 | 27 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1053 | | Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) | insig. | 27 | 24 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3488 | | Histidine kinase/HAMP domain | strong | 33 | 19 |
| | Rhodopseudomonas palustris CGA009 | TX73_006645 | | DUF4118 domain-containing protein | insig. | 29 | 27 |
| | Caulobacter crescentus NA1000 | CCNA_00287 | | photosensory histidine protein kinase LovK | cofit | 32 | 27 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00287 | | photosensory histidine protein kinase LovK | cofit | 32 | 27 |
| | Fusobacterium nucleatum SB010 | HUW76_00380 | | sensor histidine kinase | cofit | 24 | 23 |
| | Agrobacterium fabrum C58 | Atu5377 | | two component sensor kinase | no data | 29 | 25 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03410 | | Two-component sensor histidine kinase, contains HisKA and HATPase domains | insig. | 29 | 21 |
| | Bosea sp. OAE506 | ABIE41_RS03550 | | CHASE3 domain-containing protein | insig. | 28 | 33 |
| | Azospirillum brasilense Sp245 | AZOBR_RS15025 | | hypothetical protein | insig. | 31 | 22 |
| | Bosea sp. OAE506 | ABIE41_RS19920 | | histidine kinase dimerization/phosphoacceptor domain -containing protein | insig. | 28 | 29 |
| | Rhodospirillum rubrum S1H | Rru_A0693 | | Signal Transduction Histidine Kinase (NCBI) | insig. | 30 | 26 |
| | Phaeobacter inhibens DSM 17395 | PGA1_262p00730 | | putative signal transduction histidine kinase | insig. | 29 | 27 |
| | Azospirillum sp. SherDot2 | MPMX19_04050 | | hypothetical protein | insig. | 26 | 30 |
| | Rhizobium sp. OAE497 | ABIE40_RS27545 | | response regulator | insig. | 26 | 27 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1458.1 | | Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) | insig. | 30 | 26 |
| | Xanthobacter sp. DMC5 | GFF2319 | | hypothetical protein | no data | 29 | 28 |
| | Azospirillum brasilense Sp245 | AZOBR_RS07855 | | hypothetical protein | insig. | 28 | 24 |
| | Sinorhizobium meliloti 1021 | SMa2063 | | sensor histidine kinase | insig. | 31 | 26 |
| | Rhizobium sp. OAE497 | ABIE40_RS30645 | | PAS domain-containing protein | insig. | 27 | 22 |
| | Bosea sp. OAE506 | ABIE41_RS04100 | | sensor histidine kinase | no data | 32 | 18 |
| | Caulobacter crescentus NA1000 | CCNA_00665 | | GAF-family sensor histidine kinase | insig. | 27 | 29 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00665 | | GAF-family sensor histidine kinase | insig. | 27 | 29 |
| | Caulobacter crescentus NA1000 | CCNA_03302 | | nitrate/nitrite sensor histidine kinase narX | cofit | 27 | 30 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03302 | | nitrate/nitrite sensor histidine kinase narX | cofit | 27 | 30 |
| | Sphingobium sp. HT1-2 | GFF2322 | | hypothetical protein | cofit | 47 | 8 |
| | Sinorhizobium meliloti 1021 | SMc01507 | | hypothetical protein | no data | 25 | 29 |
| | Sinorhizobium meliloti 1021 | SM_b20515 | | chemotaxis methyltransferase | insig. | 27 | 32 |
| | Sphingobium sp. HT1-2 | GFF4851 | | Multidomain signal transduction protein including CheB-like methylesterase, CheR-like methyltransferase and BaeS-like histidine kinase | cofit | 28 | 26 |
| | Paraburkholderia graminis OAS925 | ABIE53_001093 | | PAS domain S-box-containing protein | insig. | 27 | 28 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS12620 | | MHYT domain-containing protein | cofit | 28 | 26 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS06580 | | HWE histidine kinase domain-containing protein | strong | 31 | 29 |
| | Caulobacter crescentus NA1000 | CCNA_01755 | | two component sensor histidine kinase | sig. | 28 | 24 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01755 | | two component sensor histidine kinase | cofit | 28 | 24 |
| | Sphingobium sp. HT1-2 | GFF2342 | | Two-component system sensor histidine kinase | cofit | 29 | 23 |
| | Rhizobium sp. OAE497 | ABIE40_RS28910 | | PAS domain S-box protein | insig. | 23 | 29 |
| | Agrobacterium fabrum C58 | Atu4164 | | two component sensor kinase | insig. | 26 | 32 |
| | Sinorhizobium meliloti 1021 | SMa1001 | | hypothetical protein | insig. | 23 | 28 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_06575 | | PAS domain S-box-containing protein | insig. | 26 | 28 |
| | Agrobacterium fabrum C58 | Atu1988 | | two component sensor kinase | insig. | 29 | 24 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0858 | pixJ1 | methyl-accepting chemotaxis sensory transducer with phytochrome sensor | insig. | 26 | 39 |
| | Sinorhizobium meliloti 1021 | SMa0113 | | Sensor histidine kinase | cofit | 26 | 29 |
| | Bosea sp. OAE506 | ABIE41_RS21435 | | ATP-binding protein | insig. | 29 | 18 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0858 | pixJ1 | methyl-accepting chemotaxis sensory transducer with phytochrome sensor | insig. | 26 | 32 |
| | Caulobacter crescentus NA1000 | CCNA_02637 | | PAS-family sensor histidine kinase | insig. | 30 | 28 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_02637 | | PAS-family sensor histidine kinase | cofit | 30 | 28 |
| | Sinorhizobium meliloti 1021 | SM_b20933 | | two-component sensor histidine kinase | insig. | 25 | 30 |
| | Paraburkholderia graminis OAS925 | ABIE53_005539 | | signal transduction histidine kinase/CheY-like chemotaxis protein | insig. | 29 | 21 |