Homologs of PS417_11245 from Pseudomonas simiae WCS417

RNA polymerase subunit sigma-24
SEED: Extracytoplasmic function (ECF) sigma factor VreI
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_11245 RNA polymerase subunit sigma-24 insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS11840 RNA polymerase sigma factor insig. 98 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS11840 RNA polymerase sigma factor sig. 98 100
o Pseudomonas sp. RS175 PFR28_01609 hypothetical protein sig. 86 100
o Pseudomonas fluorescens FW300-N2C3 AO356_24740 RNA polymerase subunit sigma-24 insig. 86 100
o Pseudomonas sp. DMC3 GFF3003 hypothetical protein insig. 85 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_641 Extracytoplasmic function (ECF) sigma factor VreI insig. 86 100
o Pseudomonas aeruginosa MRSN321 DY961_RS09155 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 73 100
o Pseudomonas aeruginosa PA14 IKLFDK_02765 RNA polymerase sigma factor VreI insig. 73 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS58865 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 73 100
o Variovorax sp. SCN45 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 58 94
  Variovorax sp. SCN45 GFF6854 RNA polymerase ECF-type sigma factor insig. 52 100
o Rhodopseudomonas palustris CGA009 TX73_006850 RNA polymerase sigma factor insig. 50 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS05075 RNA polymerase sigma factor insig. 56 96
  Rhodopseudomonas palustris CGA009 TX73_006920 RNA polymerase sigma factor insig. 40 97
  Variovorax sp. SCN45 GFF1723 Extracytoplasmic function (ECF) sigma factor VreI no data 39 92
  Rhodopseudomonas palustris CGA009 TX73_006880 sigma-70 family RNA polymerase sigma factor insig. 39 91
  Variovorax sp. SCN45 GFF791 RNA polymerase sigma factor RpoE insig. 35 93
  Variovorax sp. SCN45 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 37 91
o Cupriavidus basilensis FW507-4G11 RR42_RS14885 DNA-directed RNA polymerase sigma-70 factor insig. 39 80
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 37 91
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 36 91
  Variovorax sp. SCN45 GFF4185 RNA polymerase ECF-type sigma factor insig. 32 93
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2986 RNA polymerase sigma factor, sigma-70 family insig. 34 93
  Variovorax sp. SCN45 GFF1727 no description insig. 32 98
  Variovorax sp. SCN45 GFF96 RNA polymerase ECF-type sigma factor insig. 33 80
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 38 82
  Agrobacterium fabrum C58 Atu5309 ECF family RNA polymerase sigma factor no data 32 87
  Variovorax sp. SCN45 GFF794 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 31 85
  Variovorax sp. SCN45 GFF4182 Extracytoplasmic function (ECF) sigma factor VreI insig. 37 77
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 32 93
  Pseudomonas orientalis W4I3 QF045_RS19140 sigma-70 family RNA polymerase sigma factor insig. 37 82
  Methylophilus sp. DMC18 GFF230 hypothetical protein insig. 33 85
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 32 88
  Ralstonia solanacearum GMI1000 RS_RS14615 RNA polymerase sigma factor insig. 34 83
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 31 88
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 31 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 34 82
  Pseudomonas aeruginosa PUPa3 DQ20_RS53290 RNA polymerase sigma factor insig. 28 91
  Pseudomonas sp. DMC3 GFF1353 putative RNA polymerase sigma factor FecI cofit 37 86
  Pseudomonas sp. SVBP6 COO64_RS16360 RNA polymerase sigma factor sig. 36 83
  Pseudomonas aeruginosa PA14 IKLFDK_06490 RNA polymerase subunit sigma-70 insig. 28 91
  Sphingobium sp. HT1-2 GFF2714 FIG006045: Sigma factor, ECF subfamily insig. 36 73
  Pseudomonas aeruginosa MRSN321 DY961_RS19165 RNA polymerase sigma factor insig. 28 91
  Xanthobacter sp. DMC5 GFF2424 putative RNA polymerase sigma factor FecI insig. 36 88
  Pseudomonas sp. DMC3 GFF759 putative RNA polymerase sigma factor FecI insig. 36 83
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 34 93
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 36 82
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 34 82
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 35 82
  Pseudomonas simiae WCS417 PS417_17630 RNA polymerase sigma factor insig. 33 82
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 33 85
  Pseudomonas fluorescens SBW25 PFLU_RS19420 sigma-70 family RNA polymerase sigma factor insig. 32 82
  Pseudomonas fluorescens SBW25-INTG PFLU_RS19420 sigma-70 family RNA polymerase sigma factor strong 32 82
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 36 82
  Pseudomonas orientalis W4I3 QF045_RS09635 RNA polymerase sigma factor insig. 34 91
  Pseudomonas aeruginosa MRSN321 DY961_RS18835 RNA polymerase sigma factor sig. 34 78
  Pseudomonas aeruginosa PA14 IKLFDK_06170 RNA polymerase subunit sigma no data 34 78
  Pseudomonas aeruginosa PUPa3 DQ20_RS52975 RNA polymerase sigma factor insig. 34 78
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 34 85
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 34 85
  Pseudomonas orientalis W4I3 QF045_RS12270 sigma-70 family RNA polymerase sigma factor insig. 33 85
  Pseudomonas sp. BP01 JOY50_RS12920 RNA polymerase sigma factor insig. 32 87
  Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 33 93
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 33 93
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 31 93
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 32 92
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 33 91
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 34 82
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 34 85
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_29 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 32 91
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 34 82
  Pseudomonas sp. SVBP6 COO64_RS18805 sigma-70 family RNA polymerase sigma factor insig. 32 82
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 32 85
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 33 76
  Sphingobium sp. HT1-2 GFF4091 hypothetical protein insig. 31 78
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01536 hypothetical protein cofit 32 91
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 31 89
  Pseudomonas sp. BP01 JOY50_RS11380 RNA polymerase sigma factor insig. 31 87
  Pseudomonas putida KT2440 PP_1008 RNA polymerase subunit sigma-24 strong 31 87
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 30 86
  Rhodospirillum rubrum S1H Rru_A2372 Sigma-24 (FecI) (NCBI) insig. 34 71
  Pseudomonas simiae WCS417 PS417_22700 RNA polymerase subunit sigma-24 strong 33 80
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0532 RNA polymerase sigma factor, sigma-70 family insig. 32 81
  Pseudomonas fluorescens SBW25 PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 29 88
  Pseudomonas fluorescens SBW25-INTG PFLU_RS18285 sigma-70 family RNA polymerase sigma factor insig. 29 88
  Ralstonia solanacearum PSI07 RPSI07_RS01670 RNA polymerase sigma factor insig. 26 86
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0766 RNA polymerase sigma factor, sigma-70 family insig. 31 72
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 28 92
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 28 87
  Ralstonia solanacearum GMI1000 RS_RS19160 RNA polymerase sigma factor sig. 26 86
  Herbaspirillum seropedicae SmR1 HSERO_RS11705 extracytoplasmic-function sigma-70 factor insig. 30 90
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 31 79
  Pseudomonas sp. SVBP6 COO64_RS04025 sigma-70 family RNA polymerase sigma factor insig. 33 85
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 31 79
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21465 RNA polymerase sigma factor insig. 25 86
  Ralstonia solanacearum UW163 UW163_RS17725 RNA polymerase sigma factor insig. 25 86
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02400 RNA polymerase sigma factor cofit 31 89
  Pseudomonas sp. BP01 JOY50_RS10270 RNA polymerase sigma factor no data 29 83
  Pseudomonas sp. BP01 JOY50_RS11985 RNA polymerase sigma factor insig. 26 91