| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Xanthobacter sp. DMC5 | GFF2181 | | HTH-type transcriptional regulator DmlR | insig. | 100 | 100 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS34630 | | LysR family transcriptional regulator | insig. | 50 | 98 |
| o | Serratia liquefaciens MT49 | IAI46_18390 | | LysR family transcriptional regulator | cofit | 45 | 98 |
| | Rhizobium sp. OAE497 | ABIE40_RS01525 | | LysR family transcriptional regulator | insig. | 39 | 97 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS03985 | | LysR family transcriptional regulator | insig. | 38 | 97 |
| | Ralstonia solanacearum GMI1000 | RS_RS21490 | | LysR family transcriptional regulator | insig. | 38 | 97 |
| | Bosea sp. OAE506 | ABIE41_RS06975 | | LysR family transcriptional regulator | insig. | 38 | 97 |
| o | Pseudomonas segetis P6 | ACVTMO_RS09425 | | LysR family transcriptional regulator | insig. | 37 | 97 |
| o | Pseudomonas stutzeri RCH2 | Psest_1913 | | Transcriptional regulator | insig. | 38 | 97 |
| | Rhodospirillum rubrum S1H | Rru_A2257 | | Transcriptional Regulator, LysR family (NCBI) | strong | 37 | 95 |
| | Dechlorosoma suillum PS | Dsui_0016 | | transcriptional regulator | strong | 37 | 97 |
| | Klebsiella michiganensis M5al | BWI76_RS27965 | | LysR family transcriptional regulator | insig. | 40 | 82 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS01140 | | LysR family transcriptional regulator | cofit | 38 | 99 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_274 | | Transcriptional regulator, LysR family | insig. | 37 | 99 |
| o | Pseudomonas simiae WCS417 | PS417_08500 | | LysR family transcriptional regulator | insig. | 37 | 99 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2238 | | Transcriptional regulator, LysR family | insig. | 37 | 99 |
| | Pseudomonas sp. S08-1 | OH686_22445 | | Transcriptional regulator, LysR family | insig. | 37 | 97 |
| | Rhodospirillum rubrum S1H | Rru_A1041 | | Transcriptional Regulator, LysR family (NCBI) | insig. | 37 | 97 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS08450 | | LysR family transcriptional regulator | insig. | 37 | 99 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS08450 | | LysR family transcriptional regulator | strong | 37 | 99 |
| o | Pseudomonas orientalis W4I3 | QF045_RS11220 | | LysR family transcriptional regulator | cofit | 37 | 99 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01832 | | HTH-type transcriptional regulator DmlR | insig. | 36 | 99 |
| | Pseudomonas segetis P6 | ACVTMO_RS17005 | | LysR substrate-binding domain-containing protein | insig. | 35 | 98 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_3985 | | Transcriptional regulator | insig. | 39 | 82 |
| | Bosea sp. OAE506 | ABIE41_RS22155 | | LysR family transcriptional regulator | insig. | 39 | 97 |
| | Rhizobium sp. OAE497 | ABIE40_RS28275 | | LysR family transcriptional regulator | insig. | 40 | 76 |
| | Pseudomonas stutzeri RCH2 | Psest_2817 | | Transcriptional regulator | insig. | 35 | 95 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS12295 | | LysR family transcriptional regulator | sig. | 36 | 97 |
| | Agrobacterium fabrum C58 | Atu0664 | | transcriptional regulator, LysR family | strong | 36 | 97 |
| | Rhizobium sp. OAE497 | ABIE40_RS03550 | | LysR family transcriptional regulator | strong | 35 | 97 |
| | Enterobacter sp. TBS_079 | MPMX20_00005 | | HTH-type transcriptional regulator PgrR | insig. | 38 | 82 |
| | Agrobacterium fabrum C58 | Atu5392 | | LysR family transcriptional regulator | no data | 35 | 97 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_14465 | | LysR family transcriptional regulator | insig. | 36 | 98 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS02755 | | LysR family transcriptional regulator | insig. | 36 | 98 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS32840 | | LysR family transcriptional regulator | insig. | 36 | 98 |
| | Pseudomonas sp. SVBP6 | COO64_RS19755 | | LysR substrate-binding domain-containing protein | insig. | 35 | 97 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4683 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 35 | 97 |
| | Caulobacter crescentus NA1000 | CCNA_02602 | | LysR-family transcriptional regulator | insig. | 38 | 94 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_02602 | | LysR-family transcriptional regulator | insig. | 38 | 94 |
| | Xanthobacter sp. DMC5 | GFF3690 | | HTH-type transcriptional regulator DmlR | insig. | 37 | 95 |
| | Pseudomonas putida KT2440 | PP_1861 | | Transcriptional regulator, LysR family | insig. | 35 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS06040 | | LysR family transcriptional regulator | insig. | 35 | 98 |
| o | Pseudomonas sp. BP01 | JOY50_RS17035 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS15205 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| | Pseudomonas sp. S08-1 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 34 | 97 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS11615 | | LysR family transcriptional regulator | sig. | 38 | 98 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS17325 | | LysR family transcriptional regulator | insig. | 37 | 98 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16575 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS42300 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 34 | 96 |
| | Sinorhizobium meliloti 1021 | SMc00831 | | transcriptional regulator | insig. | 35 | 97 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS14825 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 34 | 96 |
| | Pseudomonas sp. RS175 | PFR28_00419 | | HTH-type transcriptional regulator DmlR | strong | 35 | 97 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3107 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 35 | 97 |
| | Azospirillum sp. SherDot2 | MPMX19_04565 | | HTH-type transcriptional regulator PgrR | insig. | 37 | 96 |
| | Ralstonia solanacearum GMI1000 | RS_RS06820 | | LysR family transcriptional regulator | insig. | 37 | 98 |
| | Paraburkholderia graminis OAS925 | ABIE53_002538 | | DNA-binding transcriptional LysR family regulator | sig. | 36 | 97 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_29570 | | LysR family transcriptional regulator | insig. | 36 | 98 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3045 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | strong | 35 | 97 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_18535 | | glutathione-dependent formaldehyde neutralization regulator | insig. | 34 | 96 |
| | Rahnella sp. WP5 | EX31_RS16730 | | LysR family transcriptional regulator | insig. | 33 | 95 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS00160 | | LysR family transcriptional regulator | no data | 37 | 98 |
| | Ralstonia solanacearum UW163 | UW163_RS13490 | | LysR family transcriptional regulator | no data | 37 | 98 |
| | Shewanella loihica PV-4 | Shew_2292 | | LysR family transcriptional regulator (RefSeq) | insig. | 34 | 94 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00578 | | transcriptional regulator, LysR family | insig. | 36 | 97 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS06390 | | LysR family transcriptional regulator | insig. | 35 | 93 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS06260 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS06390 | | LysR family transcriptional regulator | insig. | 34 | 98 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS06390 | | LysR family transcriptional regulator | cofit | 34 | 98 |
| | Pseudomonas sp. DMC3 | GFF2076 | | HTH-type transcriptional regulator DmlR | insig. | 34 | 98 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_05925 | | LysR family transcriptional regulator | strong | 34 | 97 |
| | Shewanella oneidensis MR-1 | SO3363 | | transcriptional regulator, LysR family (NCBI ptt file) | strong | 33 | 97 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08360 | | LysR family transcriptional regulator | insig. | 32 | 97 |
| | Pseudomonas simiae WCS417 | PS417_06325 | | LysR family transcriptional regulator | strong | 34 | 98 |
| | Pseudomonas sp. DMC3 | GFF4609 | | HTH-type transcriptional regulator DmlR | cofit | 37 | 99 |
| | Shewanella sp. ANA-3 | Shewana3_1186 | | LysR family transcriptional regulator (RefSeq) | strong | 32 | 97 |
| | Bosea sp. OAE506 | ABIE41_RS06370 | | LysR family transcriptional regulator | insig. | 35 | 96 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS26820 | | LysR family transcriptional regulator | insig. | 35 | 95 |
| | Pseudomonas orientalis W4I3 | QF045_RS09170 | | LysR substrate-binding domain-containing protein | insig. | 34 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01435 | | HTH-type transcriptional regulator DmlR | cofit | 34 | 98 |
| | Shewanella loihica PV-4 | Shew_3105 | | LysR family transcriptional regulator (RefSeq) | no data | 36 | 86 |
| | Paraburkholderia graminis OAS925 | ABIE53_005907 | | DNA-binding transcriptional LysR family regulator | insig. | 35 | 95 |
| | Variovorax sp. SCN45 | GFF5667 | | Transcriptional regulator, LysR family | insig. | 35 | 93 |
| | Acinetobacter baumannii LAC-4 | RR41_RS10935 | | LysR family transcriptional regulator | insig. | 35 | 82 |
| | Serratia liquefaciens MT49 | IAI46_16195 | | LysR family transcriptional regulator | insig. | 34 | 99 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21915 | | LysR family transcriptional regulator | strong | 32 | 97 |
| | Shewanella loihica PV-4 | Shew_1128 | | LysR family transcriptional regulator (RefSeq) | strong | 33 | 97 |
| | Ralstonia solanacearum GMI1000 | RS_RS16695 | | LysR family transcriptional regulator | insig. | 35 | 92 |
| | Pectobacterium carotovorum WPP14 | HER17_RS05010 | | LysR family transcriptional regulator | insig. | 33 | 93 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_06230 | | LysR family transcriptional regulator | insig. | 39 | 95 |
| | Pseudomonas sp. BP01 | JOY50_RS23715 | | LysR substrate-binding domain-containing protein | insig. | 34 | 97 |
| | Pseudomonas stutzeri RCH2 | Psest_1182 | | Transcriptional regulator | strong | 34 | 97 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS18895 | | LysR family transcriptional regulator | insig. | 38 | 95 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS53035 | | LysR family transcriptional regulator | insig. | 38 | 95 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03714 | | transcriptional regulator, LysR family | insig. | 33 | 96 |
| | Shewanella amazonensis SB2B | Sama_2485 | | LysR family transcriptional regulator (RefSeq) | strong | 32 | 97 |
| | Serratia liquefaciens MT49 | IAI46_21735 | | LysR family transcriptional regulator | insig. | 35 | 82 |
| | Klebsiella michiganensis M5al | BWI76_RS03325 | | LysR family transcriptional regulator | insig. | 30 | 97 |
| | Dickeya dianthicola ME23 | DZA65_RS14555 | | LysR family transcriptional regulator | insig. | 35 | 93 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS39085 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS05530 | | LysR family transcriptional regulator | insig. | 39 | 97 |