| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2045 | | two-component response regulator | insig. | 100 | 100 |
| o | Variovorax sp. SCN45 | GFF2312 | | Regulatory protein, LuxR:Response regulator receiver | insig. | 53 | 97 |
| | Variovorax sp. SCN45 | GFF4115 | | Sensor protein | no data | 47 | 92 |
| | Azospirillum sp. SherDot2 | MPMX19_01390 | | Transcriptional regulatory protein LnrK | insig. | 36 | 88 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4011 | | two-component response regulator | insig. | 38 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_04863 | | Transcriptional regulatory protein LnrK | insig. | 34 | 89 |
| | Alteromonas macleodii MIT1002 | MIT1002_03317 | | Transcriptional regulatory protein DevR (DosR) | strong | 30 | 90 |
| | Shewanella amazonensis SB2B | Sama_0522 | | response regulator receiver protein (RefSeq) | insig. | 34 | 88 |
| | Azospirillum brasilense Sp245 | AZOBR_RS10290 | | transcriptional regulator | strong | 35 | 88 |
| | Azospirillum sp. SherDot2 | MPMX19_05507 | | Transcriptional regulatory protein DegU | insig. | 34 | 90 |
| | Marinobacter adhaerens HP15 | HP15_812 | | two component transcriptional regulator, LuxR family | no data | 34 | 91 |
| | Shewanella sp. ANA-3 | Shewana3_3459 | | two component LuxR family transcriptional regulator (RefSeq) | cofit | 34 | 88 |
| | Dechlorosoma suillum PS | Dsui_0382 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 36 | 88 |
| | Lysobacter sp. OAE881 | ABIE51_RS08520 | | response regulator transcription factor | insig. | 36 | 92 |
| | Rhodospirillum rubrum S1H | Rru_A2232 | | Two Component Transcriptional Regulator, LuxR family (NCBI) | no data | 35 | 91 |
| | Azospirillum sp. SherDot2 | MPMX19_04898 | | Transcriptional regulatory protein LnrK | sig. | 34 | 88 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16835 | | LuxR family transcriptional regulator | sig. | 33 | 91 |
| | Pseudomonas segetis P6 | MPMX49_03324 | | Transcriptional regulatory protein DegU | insig. | 34 | 91 |
| | Sinorhizobium meliloti 1021 | SM_b20162 | | transcriptional regulator | insig. | 32 | 91 |
| | Azospirillum brasilense Sp245 | AZOBR_RS08280 | | regulator | strong | 34 | 91 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_06500 | citB | DNA-binding response regulator | no data | 36 | 89 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_1470 | | two component transcriptional regulator, LuxR family | insig. | 35 | 88 |
| | Pseudomonas stutzeri RCH2 | Psest_2864 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | strong | 31 | 93 |
| | Pseudomonas sp. S08-1 | OH686_18240 | | Two-component transcriptional response regulator, LuxR family | cofit | 33 | 93 |
| | Azospirillum brasilense Sp245 | AZOBR_RS08040 | | regulator | insig. | 35 | 90 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3150 | | Transcriptional regulator, LuxR family | no data | 33 | 91 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4662 | | Transcriptional regulator, LuxR family | insig. | 33 | 91 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3859.1 | | Two-component system regulatory protein | sig. | 32 | 89 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_05640 | | LuxR family transcriptional regulator | strong | 33 | 91 |
| | Xanthobacter sp. DMC5 | GFF134 | | Transcriptional regulatory protein DegU | no data | 32 | 89 |
| | Pseudomonas sp. RS175 | PFR28_00478 | | Transcriptional regulatory protein DegU | strong | 34 | 91 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.5158.1 | | Transcriptional regulator, LuxR family | strong | 34 | 90 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2986 | | Transcriptional regulator, LuxR family | strong | 33 | 91 |
| | Pseudomonas sp. DMC3 | GFF2117 | | Transcriptional regulatory protein DegU | no data | 33 | 91 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_13640 | | DNA-binding response regulator | insig. | 32 | 91 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS06185 | | response regulator protein | sig. | 31 | 89 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS19300 | | response regulator transcription factor | insig. | 33 | 89 |
| | Rhodospirillum rubrum S1H | Rru_A3229 | | Two Component Transcriptional Regulator, LuxR family (NCBI) | insig. | 34 | 88 |
| | Bosea sp. OAE506 | ABIE41_RS24085 | | response regulator transcription factor | no data | 34 | 91 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS09405 | | response regulator transcription factor | no data | 35 | 89 |
| | Pseudomonas putida KT2440 | PP_1635 | | DNA-binding response regulator | strong | 33 | 91 |
| | Marinobacter adhaerens HP15 | HP15_3183 | | two component transcriptional regulator, LuxR family | strong | 33 | 93 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS21335 | | response regulator transcription factor | sig. | 32 | 89 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05910 | | response regulator transcription factor | no data | 32 | 91 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05910 | | response regulator transcription factor | sig. | 32 | 91 |
| | Azospirillum sp. SherDot2 | MPMX19_05115 | | Transcriptional regulatory protein DegU | insig. | 31 | 91 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS13915 | | DNA-binding response regulator | cofit | 32 | 88 |
| | Lysobacter sp. OAE881 | ABIE51_RS14590 | | response regulator transcription factor | sig. | 31 | 89 |
| | Pseudomonas sp. BP01 | JOY50_RS23810 | erdR | response regulator transcription factor ErdR | insig. | 33 | 91 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1384 | | regulatory protein, LuxR:Response regulator receiver | no data | 32 | 91 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1384 | | regulatory protein, LuxR:Response regulator receiver | no data | 32 | 91 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01339 | | Transcriptional regulatory protein LnrK | no data | 32 | 91 |
| | Pseudomonas simiae WCS417 | PS417_05840 | | LuxR family transcriptional regulator | strong | 32 | 91 |
| | Variovorax sp. OAS795 | ABID97_RS22620 | | response regulator transcription factor | strong | 31 | 89 |
| | Variovorax sp. SCN45 | GFF5786 | | Transcriptional regulator, LuxR family | insig. | 31 | 92 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS14195 | | response regulator transcription factor | no data | 31 | 89 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS14480 | | response regulator transcription factor | strong | 31 | 89 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS14100 | | response regulator transcription factor | insig. | 31 | 89 |
| | Variovorax sp. OAS795 | ABID97_RS28185 | | response regulator transcription factor | insig. | 32 | 95 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_03330 | citB | DNA-binding response regulator | insig. | 32 | 89 |
| | Sphingobium sp. HT1-2 | GFF2782 | | Two-component transcriptional response regulator, LuxR family | cofit | 33 | 90 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3528 | | Transcriptional regulator, LuxR family | sig. | 33 | 89 |
| | Pseudomonas sp. SVBP6 | COO64_RS19960 | erdR | response regulator transcription factor ErdR | insig. | 33 | 91 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2397.1 | | two-component system regulatory protein | insig. | 32 | 93 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0465 | | two component transcriptional regulator, LuxR family (RefSeq) | insig. | 30 | 95 |
| | Agrobacterium fabrum C58 | Atu0484 | | two component response regulator | strong | 33 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_01612 | | Transcriptional regulatory protein DegU | insig. | 34 | 88 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS08535 | | response regulator transcription factor | insig. | 34 | 88 |
| | Azospirillum sp. SherDot2 | MPMX19_06012 | | Transcriptional regulatory protein DegU | insig. | 33 | 91 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3917 | | two component transcriptional regulator, LuxR family | insig. | 30 | 94 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_19985 | | two-component system response regulator NarL | insig. | 34 | 88 |
| | Sinorhizobium meliloti 1021 | SMc02248 | | transcriptional regulator | cofit | 35 | 66 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS11480 | | response regulator | insig. | 31 | 90 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS11480 | | response regulator | sig. | 31 | 90 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c22610 | | putative transcriptional regulator, containing response regulator domain | insig. | 31 | 89 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS08575 | | response regulator transcription factor | no data | 33 | 88 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_18400 | | DNA-binding response regulator | insig. | 32 | 91 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS15195 | | response regulator transcription factor | strong | 32 | 89 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS00525 | | response regulator transcription factor | insig. | 34 | 92 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS00750 | | response regulator transcription factor | insig. | 34 | 92 |
| | Azospirillum brasilense Sp245 | AZOBR_RS20235 | | transcriptional regulator | strong | 33 | 88 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS10560 | | hypothetical protein | insig. | 32 | 91 |
| | Sphingobium sp. HT1-2 | GFF1825 | | Two-component transcriptional response regulator, NarL/FixJ family | cofit | 33 | 90 |
| | Pseudomonas stutzeri RCH2 | Psest_2038 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | strong | 31 | 89 |
| | Acinetobacter baumannii LAC-4 | RR41_RS00990 | | response regulator transcription factor | insig. | 31 | 90 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS04765 | | DNA-binding response regulator | no data | 34 | 90 |
| | Ralstonia solanacearum UW163 | UW163_RS08905 | | DNA-binding response regulator | no data | 34 | 90 |
| | Pseudomonas stutzeri RCH2 | Psest_2048 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | strong | 32 | 90 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS11155 | | DNA-binding response regulator | cofit | 31 | 90 |
| | Azospirillum brasilense Sp245 | AZOBR_RS12455 | | transcriptional regulator | sig. | 35 | 88 |
| | Alteromonas macleodii MIT1002 | MIT1002_02224 | | Protease production enhancer protein | cofit | 27 | 92 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_28105 | | LuxR family transcriptional regulator | strong | 32 | 89 |
| | Variovorax sp. OAS795 | ABID97_RS05205 | | response regulator transcription factor | insig. | 29 | 89 |
| | Pseudomonas putida KT2440 | PP_2665 | | Glycerol metabolism activator | strong | 34 | 89 |
| | Acinetobacter radioresistens SK82 | MPMX26_02902 | | Transcriptional activator protein ExaE | strong | 31 | 90 |
| | Azospirillum brasilense Sp245 | AZOBR_RS12735 | | transcriptional regulator | cofit | 34 | 89 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS06675 | | DNA-binding response regulator | insig. | 30 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_01792 | | Putative HTH-type transcriptional regulator YhjB | insig. | 33 | 89 |
| | Pseudomonas sp. RS175 | PFR28_01803 | | Transcriptional regulatory protein DegU | sig. | 31 | 89 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22350 | | LuxR family transcriptional regulator | sig. | 31 | 89 |