Homologs of GFF2039 from Sphingobium sp. HT1-2

RNA polymerase ECF-type sigma factor
SEED: RNA polymerase, sigma-24 subunit, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Sphingobium sp. HT1-2	GFF2039		RNA polymerase ECF-type sigma factor	cofit	100	100
o	Sphingomonas koreensis DSMZ 15582	Ga0059261_0612		RNA polymerase sigma factor, sigma-70 family	insig.	49	94
	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS02400		RNA polymerase sigma factor	cofit	33	89
	Azospirillum brasilense Sp245	AZOBR_RS26615		RNA polymerase	insig.	39	90
	Azospirillum sp. SherDot2	MPMX19_03088		putative RNA polymerase sigma factor FecI	insig.	37	70
	Pseudomonas orientalis W4I3	QF045_RS09635		RNA polymerase sigma factor	insig.	36	85
	Pseudomonas simiae WCS417	PS417_06880		RNA polymerase sigma factor	insig.	36	84
	Sphingobium sp. HT1-2	GFF5162		RNA polymerase, sigma-24 subunit, ECF subfamily	insig.	32	86
	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS09540		sigma-70 family RNA polymerase sigma factor	no data	31	86
	Pseudomonas sp. SVBP6	COO64_RS03795		RNA polymerase sigma factor	insig.	35	85
	Azospirillum brasilense Sp245	AZOBR_RS27315		RNA polymerase sigma 70	insig.	36	70
	Pseudomonas fluorescens SBW25	PFLU_RS06940		sigma-70 family RNA polymerase sigma factor	insig.	34	84
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS06940		sigma-70 family RNA polymerase sigma factor	sig.	34	84
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_3412		FIG006045: Sigma factor, ECF subfamily	insig.	33	86
	Pseudomonas sp. SVBP6	COO64_RS16360		RNA polymerase sigma factor	sig.	33	85
	Pseudomonas fluorescens FW300-N2C3	AO356_07625		RNA polymerase subunit sigma	insig.	33	87
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS09420		RNA polymerase sigma factor	sig.	31	92
	Pseudomonas putida KT2440	PP_0704		RNA polymerase sigma-70 factor, ECF subfamily	strong	33	86
	Pseudomonas lactucae CFBP13502	GEMAOFIL_01536		hypothetical protein	cofit	35	84
	Pectobacterium carotovorum WPP14	HER17_RS14055		sigma-70 family RNA polymerase sigma factor	insig.	35	75
	Dechlorosoma suillum PS	Dsui_1673		RNA polymerase sigma factor, sigma-70 family	no data	32	82
	Sphingobium sp. HT1-2	GFF5333		sigma factor	cofit	34	76
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS09360		RNA polymerase sigma factor	insig.	34	82
	Pseudomonas sp. RS175	PFR28_00037		putative RNA polymerase sigma factor FecI	insig.	32	87
	Pseudomonas stutzeri RCH2	Psest_0650		RNA polymerase sigma factor, sigma-70 family	insig.	37	81
	Pseudomonas aeruginosa MRSN321	DY961_RS18835		RNA polymerase sigma factor	sig.	35	77
	Pseudomonas aeruginosa PA14	IKLFDK_06170		RNA polymerase subunit sigma	no data	35	77
	Pseudomonas aeruginosa PUPa3	DQ20_RS52975		RNA polymerase sigma factor	insig.	35	77
	Pseudomonas sp. SVBP6	COO64_RS15350		sigma-70 family RNA polymerase sigma factor	insig.	31	87
	Pseudomonas syringae pv. syringae B728a	Psyr_1107		Sigma-70 region 2	insig.	34	80
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_1107		Sigma-70 region 2	insig.	34	80
	Pseudomonas sp. SVBP6	COO64_RS02925		RNA polymerase sigma factor	insig.	34	70
	Pseudomonas putida KT2440	PP_4244		alternative sigma factor	sig.	30	83
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2098		heme uptake regulator	insig.	31	84
	Pseudomonas fluorescens GW456-L13	PfGW456L13_2727		FIG006045: Sigma factor, ECF subfamily	insig.	31	85
	Pseudomonas simiae WCS417	PS417_22700		RNA polymerase subunit sigma-24	strong	29	89
	Pseudomonas sp. SVBP6	COO64_RS04025		sigma-70 family RNA polymerase sigma factor	insig.	34	83
	Pseudomonas syringae pv. syringae B728a	Psyr_1943		Sigma-70 region 2	strong	30	83
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_1943		Sigma-70 region 2	sig.	30	83
	Methylophilus sp. DMC18	GFF1078		hypothetical protein	insig.	31	74
	Pseudomonas fluorescens GW456-L13	PfGW456L13_2293		Sigma factor PvdS, controling pyoverdin biosynthesis	insig.	31	83
	Pseudomonas orientalis W4I3	QF045_RS24870		sigma-70 family RNA polymerase sigma factor	insig.	29	89
	Variovorax sp. SCN45	GFF791		RNA polymerase sigma factor RpoE	insig.	34	76
	Herbaspirillum seropedicae SmR1	HSERO_RS12165		RNA polymerase sigma factor	insig.	31	92
	Azospirillum brasilense Sp245	AZOBR_RS29160		putative RNA polymerase sigma-70 factor ECF subfamily	insig.	31	88
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_604		FIG006045: Sigma factor, ECF subfamily	insig.	31	88
	Pseudomonas fluorescens FW300-N2C3	AO356_21710		RNA polymerase subunit sigma	insig.	31	85
	Pseudomonas sp. BP01	JOY50_RS24800		sigma-70 family RNA polymerase sigma factor	insig.	32	82
	Pseudomonas sp. BP01	JOY50_RS02515		sigma-70 family RNA polymerase sigma factor	insig.	30	88
	Pseudomonas aeruginosa MRSN321	DY961_RS18585	pvdS;inference=COORDINATES	pyoverdine signaling pathway sigma factor PvdS	insig.	30	80
	Pseudomonas aeruginosa PA14	IKLFDK_11920		pyoverdine signaling pathway sigma factor PvdS	sig.	30	80
	Pseudomonas aeruginosa PUPa3	DQ20_RS59800	pvdS;inference=COORDINATES	pyoverdine signaling pathway sigma factor PvdS	insig.	30	80
	Pseudomonas sp. DMC3	GFF2767		putative RNA polymerase sigma factor FecI	insig.	32	76
	Pseudomonas fluorescens FW300-N2E3	AO353_19345		RNA polymerase subunit sigma-70	insig.	32	77
	Pseudomonas sp. DMC3	GFF4554		hypothetical protein	cofit	31	77
	Pseudomonas sp. BP01	JOY50_RS26335		sigma-70 family RNA polymerase sigma factor	insig.	30	84
	Dechlorosoma suillum PS	Dsui_0621		RNA polymerase sigma factor, sigma-70 family	insig.	29	90
	Pseudomonas aeruginosa MRSN321	DY961_RS10260		sigma-70 family RNA polymerase sigma factor	insig.	31	87
	Pseudomonas aeruginosa PUPa3	DQ20_RS51795		sigma-70 family RNA polymerase sigma factor	insig.	31	87
	Pseudomonas fluorescens SBW25	PFLU_RS24340		sigma-70 family RNA polymerase sigma factor	insig.	29	89
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS24340		sigma-70 family RNA polymerase sigma factor	strong	29	89
	Pseudomonas lactucae CFBP13502	GEMAOFIL_04694		ECF RNA polymerase sigma factor SigE	cofit	29	89
	Pseudomonas sp. RS175	PFR28_02867		putative RNA polymerase sigma factor FecI	insig.	32	78
	Pseudomonas sp. BP01	JOY50_RS18970		sigma-70 family RNA polymerase sigma factor	insig.	31	77
	Methylophilus sp. DMC18	GFF1870		hypothetical protein	insig.	30	77
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_216		Sigma factor PvdS, controling pyoverdin biosynthesis	insig.	31	77
	Pseudomonas sp. RS175	PFR28_01023		hypothetical protein	sig.	31	77
	Pseudomonas fluorescens GW456-L13	PfGW456L13_3565		heme uptake regulator	insig.	31	84
	Pseudomonas fluorescens FW300-N2E3	AO353_03435		RNA polymerase subunit sigma-24	insig.	32	80
	Pseudomonas fluorescens FW300-N2C3	AO356_02895		RNA polymerase subunit sigma-70	strong	31	77
	Pseudomonas fluorescens FW300-N2C3	AO356_21175		RNA polymerase subunit sigma	strong	32	78
	Pseudomonas sp. RS175	PFR28_02859		putative RNA polymerase sigma factor FecI	insig.	32	83
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_29		Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily	insig.	31	84
	Azospirillum sp. SherDot2	MPMX19_03082		ECF RNA polymerase sigma factor SigE	insig.	31	88
	Pseudomonas sp. DMC3	GFF5154		hypothetical protein	insig.	31	82
	Pseudomonas sp. BP01	JOY50_RS22200		sigma-70 family RNA polymerase sigma factor	insig.	30	88
	Pseudomonas simiae WCS417	PS417_28525		RNA polymerase sigma factor	insig.	31	81
	Sphingomonas koreensis DSMZ 15582	Ga0059261_2986		RNA polymerase sigma factor, sigma-70 family	insig.	33	69
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_21		Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis	sig.	32	78
	Pseudomonas fluorescens GW456-L13	PfGW456L13_2394		Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily	insig.	31	84
	Pseudomonas aeruginosa PUPa3	DQ20_RS41200		RNA polymerase sigma factor	insig.	31	88
	Pseudomonas lactucae CFBP13502	GEMAOFIL_04111		hypothetical protein	insig.	30	77
	Pseudomonas putida KT2440	PP_4611		RNA polymerase sigma-70 factor, ECF subfamily	sig.	28	86
	Pseudomonas simiae WCS417	PS417_09655		RNA polymerase sigma factor	insig.	34	78
	Azospirillum brasilense Sp245	AZOBR_RS23325		RNA polymerase sigma70	insig.	33	79
	Azospirillum brasilense Sp245	AZOBR_RS30810		RNA polymerase sigma70	insig.	32	92
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS15920		sigma-70 family RNA polymerase sigma factor	insig.	30	88
	Pseudomonas aeruginosa PA14	IKLFDK_29070		RNA polymerase subunit sigma	insig.	30	87
	Pseudomonas sp. SVBP6	COO64_RS04525		RNA polymerase sigma factor	insig.	33	83
	Pseudomonas fluorescens SBW25	PFLU_RS21525		RNA polymerase factor sigma-70	insig.	31	77
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS21525		RNA polymerase factor sigma-70	sig.	31	77
	Pseudomonas orientalis W4I3	QF045_RS21700		RNA polymerase factor sigma-70	no data	31	77
	Pseudomonas simiae WCS417	PS417_19555		RNA polymerase sigma70	strong	31	77
	Pseudomonas fluorescens GW456-L13	PfGW456L13_1886		FIG006045: Sigma factor, ECF subfamily	insig.	31	80
	Pseudomonas sp. S08-1	OH686_01025		hypothetical protein	insig.	29	91
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2404		Sigma factor PvdS, controling pyoverdin biosynthesis	sig.	30	75
	Pseudomonas aeruginosa MRSN321	DY961_RS28585		sigma-70 family RNA polymerase sigma factor	insig.	30	90
	Pseudomonas aeruginosa PA14	IKLFDK_09340		RNA polymerase subunit sigma	no data	30	90
	Pseudomonas aeruginosa PUPa3	DQ20_RS38070		sigma-70 family RNA polymerase sigma factor	no data	30	90
	Serratia liquefaciens MT49	IAI46_11745		sigma-70 family RNA polymerase sigma factor	no data	31	80