Homologs of Echvi_2880 from Echinicola vietnamensis KMM 6221, DSM 17526

RNA polymerase sigma factor, sigma-70 family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2880 RNA polymerase sigma factor, sigma-70 family insig. 100 100
  Paraburkholderia sabiae LMG 24235 QEN71_RS31540 RNA polymerase sigma-70 factor insig. 32 77
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4523 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 79
  Acidovorax sp. GW101-3H11 Ac3H11_4965 RNA polymerase ECF-type sigma factor insig. 30 78
  Variovorax sp. SCN45 GFF5440 RNA polymerase ECF-type sigma factor insig. 33 77
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01268 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 78
  Burkholderia phytofirmans PsJN BPHYT_RS11635 RNA polymerase subunit sigma-24 insig. 32 77
  Variovorax sp. OAS795 ABID97_RS02030 RNA polymerase sigma-70 factor insig. 32 77
  Phaeobacter inhibens DSM 17395 PGA1_c28920 'RNA polymerase sigma factor (sigma-70 family; ECF41 subgroup)' insig. 32 76
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3501 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 79
  Paraburkholderia graminis OAS925 ABIE53_004797 RNA polymerase sigma-70 factor (ECF subfamily) insig. 30 79
  Ralstonia sp. UNC404CL21Col ABZR87_RS05500 RNA polymerase sigma-70 factor strong 30 77
  Herbaspirillum seropedicae SmR1 HSERO_RS00750 RNA polymerase subunit sigma-24 insig. 29 78
  Ralstonia solanacearum PSI07 RPSI07_RS23355 RNA polymerase sigma-70 factor insig. 30 79
  Lysobacter sp. OAE881 ABIE51_RS08425 RNA polymerase sigma-70 factor insig. 30 78
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF235 Putative RNA polymerase sigma factor insig. 32 77
  Caulobacter crescentus NA1000 CCNA_03375 RNA polymerase sigma-J factor strong 33 79
  Caulobacter crescentus NA1000 Δfur CCNA_03375 RNA polymerase sigma-J factor cofit 33 79
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS01610 RNA polymerase sigma-70 factor insig. 32 79
  Lysobacter sp. OAE881 ABIE51_RS11095 RNA polymerase sigma-70 factor insig. 33 77
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3435 RNA polymerase sigma factor, sigma-70 family insig. 33 78
  Rhodopseudomonas palustris CGA009 TX73_005735 sigma-70 family RNA polymerase sigma factor insig. 32 78
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00750 RNA polymerase sigma factor SigJ insig. 33 79
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS15060 RNA polymerase sigma factor SigJ insig. 31 78
  Rhodanobacter denitrificans MT42 LRK55_RS14775 RNA polymerase sigma factor SigJ insig. 31 78
  Rhodanobacter sp. FW510-T8 OKGIIK_03820 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 78
o Sinorhizobium meliloti 1021 SM_b20030 RNA polymerase sigma factor SigJ insig. 31 78
  Azospirillum sp. SherDot2 MPMX19_00243 ECF RNA polymerase sigma factor SigJ insig. 30 77
  Mycobacterium tuberculosis H37Rv Rv3328c Probable alternative RNA polymerase sigma factor (fragment) SigJ insig. 30 63
  Paraburkholderia graminis OAS925 ABIE53_003338 RNA polymerase sigma factor (sigma-70 family) strong 34 54
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04104 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 54
  Paraburkholderia sabiae LMG 24235 QEN71_RS02865 sigma-70 family RNA polymerase sigma factor insig. 34 44
  Magnetospirillum magneticum AMB-1 AMB_RS17600 DNA-directed RNA polymerase specialized sigma subunit cofit 31 73
  Burkholderia phytofirmans PsJN BPHYT_RS15835 RNA polymerase subunit sigma24 insig. 36 41
  Mycobacterium tuberculosis H37Rv Rv1189 Possible alternative RNA polymerase sigma factor SigI no data 25 54
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4566 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 33 43
  Variovorax sp. SCN45 GFF6705 hypothetical protein insig. 27 59
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS00075 RNA polymerase sigma factor insig. 29 47
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4205 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 27 45
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 30 41
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13725 sigma-70 family RNA polymerase sigma factor sig. 29 41
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15905 RNA polymerase sigma factor cofit 33 37
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12140 hypothetical protein insig. 29 47
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1733 RNA polymerase sigma factor, sigma-70 family insig. 30 45
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19605 RNA polymerase insig. 29 44
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19950 RNA polymerase subunit sigma-24 insig. 31 42
  Agrobacterium fabrum C58 Atu3387 sigma factor insig. 31 36
  Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 27 41
  Kangiella aquimarina DSM 16071 B158DRAFT_1843 RNA polymerase sigma factor, sigma-70 family insig. 25 49
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19085 RNA polymerase subunit sigma-24 insig. 33 37
  Burkholderia phytofirmans PsJN BPHYT_RS20215 RNA polymerase sigma 70 sig. 32 37
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0726 RNA polymerase sigma factor, sigma-70 family insig. 27 43
  Acidovorax sp. GW101-3H11 Ac3H11_1193 RNA polymerase ECF-type sigma factor insig. 26 51
  Marinobacter adhaerens HP15 HP15_342 RNA polymerase sigma factor SigE insig. 26 41
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11705 hypothetical protein insig. 34 41
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 32 39
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 31 39
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4578 RNA polymerase sigma factor, sigma-70 family insig. 24 42
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS07720 sigma-70 family RNA polymerase sigma factor strong 29 47
  Phocaeicola dorei CL03T12C01 ABI39_RS00235 sigma-70 family RNA polymerase sigma factor sig. 29 47
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0358 RNA polymerase sigma factor, sigma-70 family strong 29 40
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1682 RNA polymerase sigma-70 factor, ECF subfamily insig. 28 37
  Azospirillum brasilense Sp245 AZOBR_RS23325 RNA polymerase sigma70 insig. 31 37
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0603 RNA polymerase sigma factor, sigma-70 family sig. 31 40
  Phocaeicola dorei CL03T12C01 ABI39_RS06270 RNA polymerase sigma-70 factor insig. 30 42
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10800 RNA polymerase sigma-70 factor insig. 30 42
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 32 41
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04025 RNA polymerase sigma factor insig. 30 42
  Kangiella aquimarina DSM 16071 B158DRAFT_0015 RNA polymerase sigma factor, sigma-70 family insig. 29 45
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS14245 RNA polymerase sigma-70 factor insig. 29 46
  Pseudomonas fluorescens FW300-N2C3 AO356_28820 RNA polymerase subunit sigma insig. 28 39
  Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 29 37
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3485 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 29 44
  Rhodospirillum rubrum S1H Rru_A0883 Sigma-24 (FecI) (NCBI) insig. 29 38
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02095 RNA polymerase sigma factor insig. 29 42
  Pseudomonas putida KT2440 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily strong 27 43
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10380 RNA polymerase subunit sigma-70 insig. 26 48
  Phocaeicola dorei CL03T12C01 ABI39_RS03415 RNA polymerase sigma-70 factor insig. 26 45
  Pseudomonas fluorescens FW300-N2E3 AO353_20305 RNA polymerase subunit sigma-24 no data 22 46
  Bacteroides thetaiotaomicron VPI-5482 BT4720 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) cofit 31 39
  Bacteroides ovatus ATCC 8483 BACOVA_00098 RNA polymerase sigma-70 factor insig. 26 45
  Azospirillum sp. SherDot2 MPMX19_03247 putative RNA polymerase sigma factor FecI insig. 30 37
  Phocaeicola dorei CL03T12C01 ABI39_RS08620 RNA polymerase sigma-70 factor insig. 29 41
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2891 RNA polymerase sigma factor, sigma-70 family insig. 31 37
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 28 45
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 28 37
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09110 RNA polymerase sigma-70 factor insig. 25 45
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4818 RNA polymerase sigma-70 factor, ECF subfamily insig. 27 37
  Bacteroides ovatus ATCC 8483 BACOVA_00284 RNA polymerase sigma-70 factor insig. 27 45
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 26 40
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 26 40
  Cupriavidus basilensis FW507-4G11 RR42_RS31145 RNA polymerase sigma factor insig. 29 37
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04435 RNA polymerase sigma factor insig. 31 38
  Pseudomonas simiae WCS417 PS417_09655 RNA polymerase sigma factor insig. 30 37
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2139 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 29 43
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS12860 RNA polymerase sigma-70 factor insig. 26 42
  Variovorax sp. SCN45 GFF2126 hypothetical protein no data 25 42
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 30 38
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08220 RNA polymerase sigma-70 factor insig. 28 43
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00850 hypothetical protein insig. 28 47