| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Magnetospirillum magneticum AMB-1 | AMB_RS03490 | | cAMP-binding protein | insig. | 100 | 100 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS19645 | | cAMP-binding protein | insig. | 40 | 89 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS02540 | | two-component system response regulator | cofit | 38 | 88 |
| o | Rhodospirillum rubrum S1H | Rru_A0496 | | Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI) | cofit | 39 | 92 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS21535 | | cyclic nucleotide-binding domain-containing protein | cofit | 39 | 80 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS15570 | | signal transduction protein | insig. | 32 | 80 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS12845 | | cyclic nucleotide-binding domain-containing protein | insig. | 27 | 82 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS14110 | | cyclic nucleotide-binding domain-containing protein | cofit | 31 | 83 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS11745 | | Crp/Fnr family transcriptional regulator | cofit | 32 | 92 |
| | Azospirillum sp. SherDot2 | MPMX19_05815 | | hypothetical protein | insig. | 36 | 74 |
| | Pseudomonas sp. SVBP6 | COO64_RS22280 | | cyclic nucleotide-binding domain-containing protein | insig. | 35 | 71 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS07525 | | cyclic nucleotide-binding domain-containing protein | insig. | 39 | 63 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS07525 | | cyclic nucleotide-binding domain-containing protein | sig. | 39 | 63 |
| | Pseudomonas simiae WCS417 | PS417_07440 | | cyclic nucleotide-binding protein | insig. | 38 | 63 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS15175 | | EAL domain-containing protein | insig. | 34 | 67 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4485 | | Cyclic nucleotide-binding protein | insig. | 32 | 75 |
| | Pseudomonas sp. DMC3 | GFF2320 | | hypothetical protein | insig. | 31 | 86 |
| | Bifidobacterium breve UCC2003 | BBR_RS12880 | | Crp/Fnr family transcriptional regulator | strong | 28 | 82 |
| | Pseudomonas orientalis W4I3 | QF045_RS10090 | | cyclic nucleotide-binding domain-containing protein | cofit | 39 | 61 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2714 | | transcriptional regulator, Crp/Fnr family | insig. | 32 | 75 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_04365 | | cyclic nucleotide-binding protein | no data | 32 | 74 |
| | Azospirillum brasilense Sp245 | AZOBR_RS09400 | | transcriptional regulator Crp/Fnr family | insig. | 31 | 86 |
| | Pseudomonas sp. RS175 | PFR28_00722 | | hypothetical protein | insig. | 31 | 75 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1573 | | cyclic nucleotide-binding protein | sig. | 33 | 71 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1573 | | cyclic nucleotide-binding protein | insig. | 33 | 71 |
| | Azospirillum sp. SherDot2 | MPMX19_02650 | | hypothetical protein | insig. | 32 | 80 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3356 | | Cyclic nucleotide-binding protein | insig. | 30 | 75 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_17945 | | cyclic nucleotide-binding protein | insig. | 34 | 63 |
| | Dechlorosoma suillum PS | Dsui_1690 | | cAMP-binding protein | cofit | 29 | 78 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS03515 | | Crp/Fnr family transcriptional regulator | insig. | 30 | 87 |
| | Pseudomonas segetis P6 | ACVTMO_RS14760 | | cyclic nucleotide-binding domain-containing protein | insig. | 27 | 79 |
| | Sinorhizobium meliloti 1021 | SMc02175 | | transcriptional regulator | sig. | 33 | 82 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01621 | | hypothetical protein | cofit | 34 | 63 |
| | Rhodopseudomonas palustris CGA009 | TX73_020705 | | Crp/Fnr family transcriptional regulator | insig. | 28 | 76 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS17960 | | Crp/Fnr family transcriptional regulator | insig. | 29 | 79 |
| | Mycobacterium tuberculosis H37Rv | Rv3676 | | Transcriptional regulatory protein Crp (Crp/Fnr-family) | no data | 31 | 70 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3967 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | insig. | 35 | 55 |
| | Azospirillum brasilense Sp245 | AZOBR_RS09345 | | small mechanosensitive ion channel protein MscS | insig. | 30 | 62 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS20530 | | Crp/Fnr family transcriptional regulator | insig. | 32 | 62 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03782 | | bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39 | insig. | 26 | 87 |
| | Ralstonia solanacearum GMI1000 | RS_RS20965 | | Crp/Fnr family transcriptional regulator | insig. | 30 | 74 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS05625 | | response regulator | insig. | 31 | 82 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS03320 | | Crp/Fnr family transcriptional regulator | insig. | 29 | 74 |
| | Azospirillum sp. SherDot2 | MPMX19_03723 | | hypothetical protein | no data | 29 | 80 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0664 | | Cyclic nucleotide-binding | insig. | 31 | 68 |
| | Rhodopseudomonas palustris CGA009 | TX73_022920 | | Crp/Fnr family transcriptional regulator | insig. | 29 | 82 |
| | Dechlorosoma suillum PS | Dsui_1454 | | Rhodanese-like protein,cyclic nucleotide-binding protein | insig. | 29 | 56 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS34870 | | Crp/Fnr family transcriptional regulator | no data | 30 | 62 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS18050 | | Crp/Fnr family transcriptional regulator | no data | 30 | 62 |
| | Dechlorosoma suillum PS | Dsui_2428 | | cyclic nucleotide-binding protein | no data | 36 | 59 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c23680 | | putative transcriptional regulator, crp family | sig. | 42 | 44 |
| | Azospirillum brasilense Sp245 | AZOBR_RS32695 | | hypothetical protein | no data | 30 | 83 |
| | Azospirillum brasilense Sp245 | AZOBR_RS01960 | | cyclic nucleotide-binding protein | sig. | 29 | 65 |
| | Caulobacter crescentus NA1000 | CCNA_01478 | | CRP-family transcription regulator | sig. | 27 | 80 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01478 | | CRP-family transcription regulator | cofit | 27 | 80 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS18910 | | Crp/Fnr family transcriptional regulator | cofit | 30 | 77 |
| | Paraburkholderia graminis OAS925 | ABIE53_004469 | | subfamily B ATP-binding cassette protein HlyB/CyaB | sig. | 24 | 87 |
| | Pseudomonas segetis P6 | ACVTMO_RS06285 | | Crp/Fnr family transcriptional regulator | insig. | 25 | 89 |
| | Azospirillum brasilense Sp245 | AZOBR_RS13265 | | hypothetical protein | insig. | 26 | 81 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03624 | | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases | no data | 27 | 80 |
| | Variovorax sp. OAS795 | ABID97_RS18055 | | Crp/Fnr family transcriptional regulator | no data | 34 | 60 |
| | Pseudomonas simiae WCS417 | PS417_15940 | | mechanosensitive ion channel protein MscS | insig. | 29 | 60 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_4124 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | insig. | 23 | 77 |
| | Variovorax sp. SCN45 | GFF6037 | | Transcriptional regulator, Crp/Fnr family | cofit | 23 | 79 |
| | Pseudomonas orientalis W4I3 | QF045_RS04025 | | Crp/Fnr family transcriptional regulator | insig. | 33 | 62 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS18275 | | cyclic nucleotide-binding domain-containing protein | insig. | 32 | 67 |
| | Bosea sp. OAE506 | ABIE41_RS02530 | | Crp/Fnr family transcriptional regulator | insig. | 29 | 89 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2075 | | Cyclic nucleotide-binding domain. | sig. | 28 | 77 |
| | Azospirillum sp. SherDot2 | MPMX19_05815 | | hypothetical protein | insig. | 30 | 77 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS17745 | | mechanosensitive ion channel | insig. | 27 | 62 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS17745 | | mechanosensitive ion channel | insig. | 27 | 62 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS22830 | | cAMP-binding protein | no data | 26 | 79 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS09000 | | response regulator | insig. | 30 | 91 |
| | Mycobacterium tuberculosis H37Rv | Rv3239c | | Probable conserved transmembrane transport protein | insig. | 29 | 74 |
| | Pseudomonas stutzeri RCH2 | Psest_2550 | | Rhodanese-like domain./Cyclic nucleotide-binding domain. | insig. | 28 | 56 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS19890 | | Crp/Fnr family transcriptional regulator | insig. | 26 | 74 |
| | Ralstonia solanacearum UW163 | UW163_RS19285 | | Crp/Fnr family transcriptional regulator | insig. | 26 | 74 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS00970 | | Crp/Fnr family transcriptional regulator | insig. | 31 | 67 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS00970 | | Crp/Fnr family transcriptional regulator | insig. | 31 | 67 |
| | Agrobacterium fabrum C58 | Atu2578 | | cAMP-dependent protein kinase regulatory subunit | strong | 25 | 84 |
| | Sinorhizobium meliloti 1021 | SM_b21270 | | transcriptional regulator | sig. | 23 | 85 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS12710 | | peptidase C39 | insig. | 22 | 87 |
| | Pseudomonas sp. S08-1 | OH686_04305 | | hypothetical protein | insig. | 29 | 65 |
| | Dechlorosoma suillum PS | Dsui_3120 | | cAMP-binding protein | cofit | 28 | 71 |
| | Agrobacterium fabrum C58 | Atu2394 | | Regulator of Biofilm formation, Fnr Family | strong | 27 | 76 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS17880 | | STAS domain-containing protein | insig. | 32 | 64 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_124 | | Mechanosensitive ion channel | insig. | 26 | 74 |
| | Rhodopseudomonas palustris CGA009 | TX73_001470 | | cyclic nucleotide-binding domain-containing protein | insig. | 26 | 88 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS19925 | | peptidase C39 | insig. | 22 | 87 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0264 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | strong | 25 | 84 |
| | Azospirillum sp. SherDot2 | MPMX19_03330 | | hypothetical protein | insig. | 37 | 44 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF774 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | insig. | 29 | 58 |
| | Azospirillum sp. SherDot2 | MPMX19_03039 | | Cyclic AMP receptor protein | insig. | 25 | 83 |
| | Variovorax sp. OAS795 | ABID97_RS07820 | | Crp/Fnr family transcriptional regulator | strong | 22 | 80 |
| | Rhodospirillum rubrum S1H | Rru_A3460 | | Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI) | cofit | 30 | 89 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_481 | | transcriptional regulator, Crp/Fnr family | insig. | 30 | 68 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0993 | | transcriptional regulator, Crp/Fnr family (RefSeq) | insig. | 28 | 74 |
| | Rhodopseudomonas palustris CGA009 | TX73_021475 | | Crp/Fnr family transcriptional regulator | insig. | 31 | 86 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2947 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | insig. | 27 | 74 |
| | Rhodopseudomonas palustris CGA009 | TX73_020015 | | Crp/Fnr family transcriptional regulator | insig. | 27 | 89 |
| | Paraburkholderia graminis OAS925 | ABIE53_004632 | | CRP/FNR family cyclic AMP-dependent transcriptional regulator | insig. | 24 | 67 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS14520 | | peptidase domain-containing ABC transporter | insig. | 22 | 87 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS29000 | | Crp/Fnr family transcriptional regulator | insig. | 28 | 86 |
| | Xanthobacter sp. DMC5 | GFF3038 | | Glutaminase | insig. | 27 | 76 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS16350 | | Crp/Fnr family transcriptional regulator | insig. | 26 | 68 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_1053 | | transcriptional regulator, Crp/Fnr family | no data | 27 | 77 |
| | Pseudomonas sp. DMC3 | GFF4042 | | hypothetical protein | insig. | 26 | 83 |
| | Caulobacter crescentus NA1000 | CCNA_01476 | | CRP-family transcription regulator FtrB | sig. | 24 | 66 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01476 | | CRP-family transcription regulator FtrB | cofit | 24 | 66 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_1699 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | insig. | 24 | 70 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0236 | | cyclic nucleotide-binding domain (cNMP-BD) protein | insig. | 33 | 53 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS04635 | | cyclic nucleotide-binding domain-containing protein | cofit | 33 | 56 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0127 | ntcA | transcriptional regulator, Crp/Fnr family | no data | 28 | 75 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_19680 | | mechanosensitive ion channel protein MscS | insig. | 27 | 73 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS08100 | | cyclic nucleotide-binding protein | insig. | 25 | 89 |
| | Rhizobium sp. OAE497 | ABIE40_RS19795 | | cyclic nucleotide-binding domain-containing protein | sig. | 28 | 65 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1950 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | insig. | 30 | 45 |
| | Xanthobacter sp. DMC5 | GFF3775 | | putative NTE family protein | insig. | 27 | 81 |
| | Paraburkholderia graminis OAS925 | ABIE53_002244 | | thioredoxin reductase (NADPH) | insig. | 31 | 62 |
| | Bosea sp. OAE506 | ABIE41_RS06710 | | FAD-dependent oxidoreductase | insig. | 26 | 65 |
| | Xanthobacter sp. DMC5 | GFF3680 | | hypothetical protein | insig. | 27 | 62 |
| | Dechlorosoma suillum PS | Dsui_3374 | | cyclic nucleotide-binding protein | cofit | 27 | 67 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS21020 | | FAD-dependent oxidoreductase | insig. | 34 | 59 |