| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Shewanella loihica PV-4 | Shew_3105 | | LysR family transcriptional regulator (RefSeq) | no data | 100 | 100 |
| | Pseudomonas segetis P6 | ACVTMO_RS17005 | | LysR substrate-binding domain-containing protein | insig. | 41 | 97 |
| | Pseudomonas orientalis W4I3 | QF045_RS09170 | | LysR substrate-binding domain-containing protein | insig. | 40 | 99 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16575 | | LysR family transcriptional regulator | insig. | 41 | 97 |
| | Pseudomonas sp. DMC3 | GFF2076 | | HTH-type transcriptional regulator DmlR | insig. | 40 | 100 |
| | Pseudomonas simiae WCS417 | PS417_06325 | | LysR family transcriptional regulator | strong | 40 | 99 |
| | Shewanella oneidensis MR-1 | SOA0165 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 37 | 97 |
| | Caulobacter crescentus NA1000 | CCNA_02602 | | LysR-family transcriptional regulator | insig. | 41 | 97 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_02602 | | LysR-family transcriptional regulator | insig. | 41 | 97 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS06390 | | LysR family transcriptional regulator | insig. | 41 | 97 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS06390 | | LysR family transcriptional regulator | cofit | 41 | 97 |
| | Pseudomonas sp. SVBP6 | COO64_RS19755 | | LysR substrate-binding domain-containing protein | insig. | 40 | 97 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4683 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 40 | 97 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3107 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 39 | 99 |
| | Pseudomonas sp. RS175 | PFR28_00419 | | HTH-type transcriptional regulator DmlR | strong | 39 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01435 | | HTH-type transcriptional regulator DmlR | cofit | 39 | 99 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3045 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | strong | 39 | 97 |
| | Pseudomonas sp. BP01 | JOY50_RS23715 | | LysR substrate-binding domain-containing protein | insig. | 39 | 97 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_05925 | | LysR family transcriptional regulator | strong | 39 | 97 |
| | Azospirillum brasilense Sp245 | AZOBR_RS16520 | | LysR family transcriptional regulator | insig. | 41 | 96 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 39 | 97 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1366 | | transcriptional regulator, LysR family | insig. | 39 | 97 |
| | Pseudomonas putida KT2440 | PP_1615 | | Transcriptional regulator, LysR family | strong | 39 | 96 |
| | Pseudomonas sp. S08-1 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 40 | 97 |
| | Pseudomonas stutzeri RCH2 | Psest_2817 | | Transcriptional regulator | insig. | 39 | 97 |
| | Shewanella loihica PV-4 | Shew_1539 | | LysR family transcriptional regulator (RefSeq) | insig. | 38 | 97 |
| | Shewanella oneidensis MR-1 | SO2053 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 38 | 97 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS42300 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 39 | 97 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS14825 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 39 | 97 |
| | Shewanella sp. ANA-3 | Shewana3_1836 | | LysR family transcriptional regulator (RefSeq) | insig. | 38 | 99 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_18535 | | glutathione-dependent formaldehyde neutralization regulator | insig. | 38 | 97 |
| o | Pantoea sp. MT58 | IAI47_01190 | | LysR family transcriptional regulator | insig. | 39 | 98 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20745 | | LysR family transcriptional regulator | insig. | 40 | 98 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21915 | | LysR family transcriptional regulator | strong | 37 | 98 |
| | Azospirillum sp. SherDot2 | MPMX19_05002 | | HTH-type transcriptional regulator DmlR | insig. | 39 | 98 |
| o | Serratia liquefaciens MT49 | IAI46_16295 | | LysR family transcriptional regulator | insig. | 40 | 98 |
| | Shewanella amazonensis SB2B | Sama_0005 | | LysR, substrate-binding (RefSeq) | insig. | 38 | 99 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS01140 | | LysR family transcriptional regulator | cofit | 39 | 98 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_959 | | Transcriptional regulator, LysR family | insig. | 37 | 99 |
| | Azospirillum sp. SherDot2 | MPMX19_05327 | | HTH-type transcriptional regulator PgrR | insig. | 39 | 97 |
| | Alteromonas macleodii MIT1002 | MIT1002_03088 | | D-malate degradation protein R | insig. | 37 | 98 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF461 | | Transcriptional regulator, LysR family | insig. | 36 | 98 |
| | Bosea sp. OAE506 | ABIE41_RS20280 | | LysR family transcriptional regulator | insig. | 37 | 95 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2751 | | Transcriptional regulator, LysR family | insig. | 40 | 95 |
| | Azospirillum sp. SherDot2 | MPMX19_06917 | | HTH-type transcriptional regulator PgrR | cofit | 38 | 98 |
| | Acinetobacter baumannii LAC-4 | RR41_RS11295 | | LysR family transcriptional regulator | insig. | 36 | 94 |
| | Agrobacterium fabrum C58 | Atu0664 | | transcriptional regulator, LysR family | strong | 39 | 94 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS15810 | | LysR family transcriptional regulator | insig. | 36 | 99 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 40 | 92 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 40 | 92 |
| | Azospirillum brasilense Sp245 | AZOBR_RS21020 | | LysR family transcriptional regulator | no data | 38 | 98 |
| | Bosea sp. OAE506 | ABIE41_RS06370 | | LysR family transcriptional regulator | insig. | 37 | 99 |
| | Rhizobium sp. OAE497 | ABIE40_RS03550 | | LysR family transcriptional regulator | strong | 39 | 94 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2945 | | transcriptional regulator, LysR family | insig. | 36 | 99 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2945 | | transcriptional regulator, LysR family | insig. | 36 | 99 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS12490 | | LysR family transcriptional regulator | insig. | 36 | 99 |
| | Marinobacter adhaerens HP15 | HP15_936 | | transcriptional regulator, LysR family protein | insig. | 35 | 100 |
| | Agrobacterium fabrum C58 | Atu3197 | | LysR family transcriptional regulator | insig. | 38 | 98 |
| | Pseudomonas sp. S08-1 | OH686_23140 | | Transcriptional regulator, LysR family | insig. | 37 | 99 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS12790 | | LysR family transcriptional regulator | insig. | 36 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05865 | | transcriptional regulator, LysR family | insig. | 36 | 99 |
| | Sinorhizobium meliloti 1021 | SMc00831 | | transcriptional regulator | insig. | 39 | 96 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_29570 | | LysR family transcriptional regulator | insig. | 36 | 97 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1429 | | Transcriptional regulator, LysR family | insig. | 39 | 95 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS30490 | | LysR family transcriptional regulator | insig. | 34 | 98 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | insig. | 38 | 92 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5922 | | Transcriptional regulator, LysR family | insig. | 35 | 95 |
| o | Paraburkholderia graminis OAS925 | ABIE53_005852 | | DNA-binding transcriptional LysR family regulator | insig. | 33 | 100 |
| o | Variovorax sp. OAS795 | ABID97_RS03060 | | LysR substrate-binding domain-containing protein | insig. | 37 | 98 |
| | Bosea sp. OAE506 | ABIE41_RS22155 | | LysR family transcriptional regulator | insig. | 38 | 97 |
| o | Enterobacter sp. TBS_079 | MPMX20_02122 | | HTH-type transcriptional regulator DmlR | sig. | 38 | 96 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS11850 | | transcriptional regulator | no data | 36 | 95 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS15410 | | LysR family transcriptional regulator | cofit | 36 | 96 |
| | Rhizobium sp. OAE497 | ABIE40_RS28275 | | LysR family transcriptional regulator | insig. | 35 | 97 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_20020 | | transcriptional regulator | insig. | 34 | 96 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.4646.1 | | Transcriptional regulator, LysR family | insig. | 38 | 99 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS06260 | | LysR family transcriptional regulator | insig. | 37 | 97 |
| | Pseudomonas sp. DMC3 | GFF943 | | HTH-type transcriptional regulator DmlR | cofit | 39 | 92 |
| | Paraburkholderia graminis OAS925 | ABIE53_002082 | | DNA-binding transcriptional LysR family regulator | insig. | 39 | 96 |
| | Pseudomonas putida KT2440 | PP_3811 | | Transcriptional regulator, LysR family | insig. | 37 | 92 |
| | Sinorhizobium meliloti 1021 | SMc02984 | | transcriptional regulator | insig. | 37 | 98 |
| | Serratia liquefaciens MT49 | IAI46_20610 | | LysR family transcriptional regulator | insig. | 34 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02296 | | HTH-type transcriptional regulator DmlR | cofit | 32 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00866 | | transcriptional regulator, LysR family | no data | 39 | 96 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_3985 | | Transcriptional regulator | insig. | 39 | 97 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0123 | | transcriptional regulator, LysR family (RefSeq) | sig. | 37 | 99 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_21990 | | LysR family transcriptional regulator | insig. | 37 | 92 |
| | Dickeya dianthicola 67-19 | HGI48_RS19010 | | LysR family transcriptional regulator | insig. | 37 | 96 |
| | Xanthobacter sp. DMC5 | GFF3690 | | HTH-type transcriptional regulator DmlR | insig. | 37 | 96 |
| | Pseudomonas putida KT2440 | PP_2502 | | Transcriptional regulator, LysR family | insig. | 36 | 99 |
| | Shewanella loihica PV-4 | Shew_2292 | | LysR family transcriptional regulator (RefSeq) | insig. | 37 | 99 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS03175 | | LysR family transcriptional regulator | insig. | 36 | 96 |
| o | Ralstonia solanacearum UW163 | UW163_RS10550 | | LysR family transcriptional regulator | insig. | 36 | 96 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS12295 | | LysR family transcriptional regulator | sig. | 36 | 97 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_482 | | Transcriptional regulator, LysR family | insig. | 34 | 94 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3062 | | transcriptional regulator, LysR family | insig. | 32 | 98 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3062 | | transcriptional regulator, LysR family | insig. | 32 | 98 |
| | Pseudomonas sp. DMC3 | GFF1055 | | HTH-type transcriptional regulator PgrR | cofit | 36 | 96 |
| | Paraburkholderia graminis OAS925 | ABIE53_006367 | | DNA-binding transcriptional LysR family regulator | insig. | 36 | 96 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | insig. | 38 | 92 |