Homologs of SO3748 from Shewanella oneidensis MR-1

LysM domain protein (NCBI ptt file)
SEED: LysM domain protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO3748 LysM domain protein (NCBI ptt file) strong 100 100
o Shewanella sp. ANA-3 Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) strong 96 100
o Shewanella amazonensis SB2B Sama_0726 ErfK/YbiS/YcfS/YnhG (RefSeq) strong 77 100
o Dickeya dadantii 3937 DDA3937_RS03570 L,D-transpeptidase family protein sig. 65 100
o Dickeya dianthicola ME23 DZA65_RS03790 L,D-transpeptidase family protein insig. 64 100
o Dickeya dianthicola 67-19 HGI48_RS03670 L,D-transpeptidase family protein strong 64 100
o Pectobacterium carotovorum WPP14 HER17_RS17580 L,D-transpeptidase family protein cofit 67 92
o Serratia liquefaciens MT49 IAI46_02600 L,D-transpeptidase family protein insig. 63 100
o Pantoea sp. MT58 IAI47_13415 L,D-transpeptidase family protein strong 63 100
o Rahnella sp. WP5 EX31_RS10780 L,D-transpeptidase family protein sig. 60 100
o Klebsiella michiganensis M5al BWI76_RS09030 transpeptidase strong 63 94
  Erwinia tracheiphila SCR3 LU632_RS09245 L,D-transpeptidase family protein strong 62 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF716 L,D-transpeptidase YbiS cofit 61 100
o Enterobacter asburiae PDN3 EX28DRAFT_2148 Uncharacterized protein conserved in bacteria strong 61 100
o Enterobacter sp. TBS_079 MPMX20_01456 putative L,D-transpeptidase YbiS sig. 61 100
o Escherichia fergusonii Becca EFB2_01899 putative L,D-transpeptidase ErfK/SrfK insig. 60 99
o Escherichia coli ECOR38 HEPCGN_03475 ldtA L,D-transpeptidase cofit 60 99
o Escherichia coli Nissle 1917 ECOLIN_RS11615 L,D-transpeptidase insig. 60 99
o Escherichia coli BL21 ECD_00786 L,D-transpeptidase linking Lpp to murein strong 63 94
  Escherichia fergusonii Becca EFB2_03286 putative L,D-transpeptidase YbiS cofit 63 94
o Escherichia coli ECOR27 NOLOHH_22515 ldtB L,D-transpeptidase cofit 63 94
  Escherichia coli ECOR38 HEPCGN_01875 ldtB L,D-transpeptidase strong 63 94
o Escherichia coli ECRC101 OKFHMN_06165 ldtB L,D-transpeptidase insig. 63 94
o Escherichia coli ECRC101 MCAODC_25380 ldtB L,D-transpeptidase insig. 63 94
o Escherichia coli ECRC102 NIAGMN_04210 ldtB L,D-transpeptidase insig. 63 94
o Escherichia coli ECRC62 BNILDI_20795 ldtB L,D-transpeptidase strong 63 94
o Escherichia coli ECRC98 JDDGAC_09800 ldtB L,D-transpeptidase no data 63 94
o Escherichia coli ECRC99 KEDOAH_21745 ldtB L,D-transpeptidase no data 63 94
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02894 putative L,D-transpeptidase YbiS cofit 63 94
  Escherichia coli Nissle 1917 ECOLIN_RS04365 L,D-transpeptidase no data 63 94
o Escherichia coli BW25113 b0819 ybiS hypothetical protein (NCBI) strong 63 94
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01718 putative L,D-transpeptidase ErfK/SrfK insig. 60 99
  Escherichia coli ECRC62 BNILDI_14880 ldtA L,D-transpeptidase insig. 60 99
  Escherichia coli ECRC101 OKFHMN_25140 ldtA L,D-transpeptidase insig. 60 99
  Escherichia coli ECRC101 MCAODC_20250 ldtA L,D-transpeptidase insig. 60 99
  Escherichia coli ECRC102 NIAGMN_22645 ldtA L,D-transpeptidase insig. 60 99
  Escherichia coli ECRC98 JDDGAC_29270 ldtA L,D-transpeptidase no data 60 99
  Escherichia coli ECRC99 KEDOAH_02970 ldtA L,D-transpeptidase no data 60 99
  Escherichia coli ECOR27 NOLOHH_16050 ldtA L,D-transpeptidase no data 59 99
  Escherichia coli BL21 ECD_01899 L,D-transpeptidase linking Lpp to murein sig. 60 99
  Escherichia coli BW25113 b1990 erfK conserved protein with NAD(P)-binding Rossmann-fold domain (NCBI) insig. 60 99
  Klebsiella michiganensis M5al BWI76_RS18620 L,D-transpeptidase insig. 60 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3970 L,D-transpeptidase YbiS insig. 58 99
  Enterobacter asburiae PDN3 EX28DRAFT_0563 Uncharacterized protein conserved in bacteria insig. 63 88
  Enterobacter sp. TBS_079 MPMX20_02985 putative L,D-transpeptidase ErfK/SrfK insig. 58 98
  Dickeya dianthicola 67-19 HGI48_RS12815 L,D-transpeptidase family protein insig. 56 99
  Dickeya dianthicola ME23 DZA65_RS13280 L,D-transpeptidase family protein insig. 56 99
  Dickeya dadantii 3937 DDA3937_RS12750 L,D-transpeptidase family protein insig. 56 99
  Pectobacterium carotovorum WPP14 HER17_RS08950 L,D-transpeptidase family protein cofit 58 94
  Rahnella sp. WP5 EX31_RS13880 L,D-transpeptidase family protein insig. 55 99
  Pantoea sp. MT58 IAI47_10850 L,D-transpeptidase family protein sig. 57 94
  Serratia liquefaciens MT49 IAI46_11175 L,D-transpeptidase family protein cofit 55 97
  Enterobacter asburiae PDN3 EX28DRAFT_1817 Uncharacterized protein conserved in bacteria insig. 52 94
  Escherichia fergusonii Becca EFB2_02862 putative L,D-transpeptidase YcfS insig. 53 92
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3396 L,D-transpeptidase YcfS insig. 51 98
  Escherichia coli Nissle 1917 ECOLIN_RS06420 L,D-transpeptidase LdtC insig. 53 92
  Escherichia coli ECOR38 HEPCGN_24010 ldtC L,D-transpeptidase LdtC cofit 53 92
  Escherichia coli ECOR27 NOLOHH_21000 ldtC L,D-transpeptidase LdtC no data 52 92
  Escherichia coli ECRC101 OKFHMN_03475 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC101 MCAODC_22835 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC102 NIAGMN_24355 ldtC L,D-transpeptidase LdtC no data 52 92
  Escherichia coli ECRC62 BNILDI_19165 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC98 JDDGAC_07135 ldtC L,D-transpeptidase LdtC no data 52 92
  Escherichia coli ECRC99 KEDOAH_24280 ldtC L,D-transpeptidase LdtC no data 52 92
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02553 putative L,D-transpeptidase YcfS insig. 52 92
  Escherichia coli BL21 ECD_01109 L,D-transpeptidase linking Lpp to murein insig. 52 92
  Escherichia coli BW25113 b1113 ycfS hypothetical protein (NCBI) insig. 52 92
  Klebsiella michiganensis M5al BWI76_RS11200 transpeptidase insig. 51 93
  Enterobacter sp. TBS_079 MPMX20_01794 putative L,D-transpeptidase YcfS insig. 50 94
  Enterobacter asburiae PDN3 EX28DRAFT_1681 Uncharacterized protein conserved in bacteria insig. 47 93
  Enterobacter sp. TBS_079 MPMX20_01949 putative L,D-transpeptidase YnhG insig. 47 94
o Shewanella loihica PV-4 Shew_1006 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) strong 47 93
  Klebsiella michiganensis M5al BWI76_RS16970 murein L,D-transpeptidase sig. 48 92
  Escherichia coli ECOR27 NOLOHH_17800 ldtE L,D-transpeptidase LdtE no data 47 99
  Escherichia coli ECOR38 HEPCGN_05665 ldtE L,D-transpeptidase LdtE cofit 47 99
  Escherichia coli BL21 ECD_01647 murein L,D-transpeptidase no data 47 99
  Escherichia fergusonii Becca EFB2_02314 putative L,D-transpeptidase YnhG insig. 47 99
  Escherichia coli ECRC101 OKFHMN_27280 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli ECRC101 MCAODC_18130 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli ECRC102 NIAGMN_00785 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli ECRC98 JDDGAC_01855 ldtE L,D-transpeptidase LdtE no data 47 99
  Escherichia coli ECRC99 KEDOAH_00830 ldtE L,D-transpeptidase LdtE no data 47 99
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02046 putative L,D-transpeptidase YnhG insig. 47 99
  Escherichia coli Nissle 1917 ECOLIN_RS09385 L,D-transpeptidase LdtE no data 47 99
  Escherichia coli BW25113 b1678 ynhG hypothetical protein (NCBI) insig. 47 99
  Escherichia coli ECRC62 BNILDI_16590 ldtE L,D-transpeptidase LdtE insig. 47 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3564 L,D-transpeptidase YnhG insig. 46 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_14325 peptidase sig. 43 94
o Pseudomonas sp. S08-1 OH686_01780 L,D-transpeptidase strong 40 98
  Pseudomonas sp. RS175 PFR28_00960 hypothetical protein strong 46 77
  Pseudomonas putida KT2440 PP_2320 conserved exported protein of unknown function strong 44 82
  Pseudomonas syringae pv. syringae B728a Psyr_2070 ErfK/YbiS/YcfS/YnhG strong 43 82
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2070 ErfK/YbiS/YcfS/YnhG insig. 43 82
  Pseudomonas fluorescens FW300-N2E3 AO353_19015 hypothetical protein strong 45 77
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2474 ErfK/YbiS/YcfS/YnhG family protein strong 45 77
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2221 ErfK/YbiS/YcfS/YnhG family protein strong 43 82
  Pseudomonas fluorescens FW300-N2C3 AO356_03215 hypothetical protein strong 45 77
  Pseudomonas simiae WCS417 PS417_08415 hypothetical protein strong 43 82
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_292 ErfK/YbiS/YcfS/YnhG family protein strong 43 82
  Pseudomonas fluorescens SBW25 PFLU_RS08365 L,D-transpeptidase family protein cofit 43 82