Homologs of SO3748 from Shewanella oneidensis MR-1

LysM domain protein (NCBI ptt file)
SEED: LysM domain protein

203 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO3748 LysM domain protein (NCBI ptt file) strong 100 100
o Shewanella sp. ANA-3 Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) strong 96 100
o Shewanella amazonensis SB2B Sama_0726 ErfK/YbiS/YcfS/YnhG (RefSeq) strong 77 100
  Dickeya dadantii 3937 DDA3937_RS03570 L,D-transpeptidase family protein sig. 65 100
  Dickeya dianthicola ME23 DZA65_RS03790 L,D-transpeptidase family protein insig. 64 100
  Dickeya dianthicola 67-19 HGI48_RS03670 L,D-transpeptidase family protein strong 64 100
o Pectobacterium carotovorum WPP14 HER17_RS17580 L,D-transpeptidase family protein cofit 67 92
o Serratia liquefaciens MT49 IAI46_02600 L,D-transpeptidase family protein insig. 63 100
  Pantoea sp. MT58 IAI47_13415 L,D-transpeptidase family protein strong 63 100
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS13525 L,D-transpeptidase family protein cofit 63 100
o Rahnella sp. WP5 EX31_RS10780 L,D-transpeptidase family protein sig. 60 100
  Erwinia amylovora T8 OLJFJH_16675 L D-transpeptidase strong 61 99
o Klebsiella michiganensis M5al BWI76_RS09030 transpeptidase strong 63 94
  Erwinia tracheiphila SCR3 LU632_RS09245 L,D-transpeptidase family protein strong 62 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF716 L,D-transpeptidase YbiS cofit 61 100
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_19675 L D-transpeptidase cofit 62 97
o Enterobacter asburiae PDN3 EX28DRAFT_2148 Uncharacterized protein conserved in bacteria strong 61 100
  Enterobacter sp. TBS_079 MPMX20_01456 putative L,D-transpeptidase YbiS sig. 61 100
o Klebsiella pneumoniae MKP103 KDGMDA_17285 L D-transpeptidase strong 62 94
o Klebsiella pneumoniae MRSN742743 GJGHJB_03398 ldtB L D-transpeptidase strong 62 94
o Escherichia fergusonii Becca EFB2_01899 putative L,D-transpeptidase ErfK/SrfK insig. 60 99
o Escherichia coli ECOR38 HEPCGN_03475 ldtA L,D-transpeptidase insig. 60 99
o Escherichia coli Nissle 1917 ECOLIN_RS11615 L,D-transpeptidase insig. 60 99
o Escherichia coli BL21 ECD_00786 L,D-transpeptidase linking Lpp to murein strong 63 94
  Escherichia fergusonii Becca EFB2_03286 putative L,D-transpeptidase YbiS cofit 63 94
o Escherichia coli ECOR27 NOLOHH_22515 ldtB L,D-transpeptidase strong 63 94
  Escherichia coli ECOR38 HEPCGN_01875 ldtB L,D-transpeptidase strong 63 94
o Escherichia coli ECRC100 OKFHMN_06165 ldtB L,D-transpeptidase cofit 63 94
o Escherichia coli ECRC101 MCAODC_25380 ldtB L,D-transpeptidase strong 63 94
o Escherichia coli ECRC102 NIAGMN_04210 ldtB L,D-transpeptidase cofit 63 94
o Escherichia coli ECRC62 BNILDI_20795 ldtB L,D-transpeptidase strong 63 94
o Escherichia coli ECRC98 JDDGAC_09800 ldtB L,D-transpeptidase strong 63 94
o Escherichia coli ECRC99 KEDOAH_21745 ldtB L,D-transpeptidase no data 63 94
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02894 putative L,D-transpeptidase YbiS cofit 63 94
  Escherichia coli Nissle 1917 ECOLIN_RS04365 L,D-transpeptidase no data 63 94
o Escherichia coli BW25113 b0819 ybiS hypothetical protein (NCBI) strong 63 94
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01718 putative L,D-transpeptidase ErfK/SrfK insig. 60 99
  Escherichia coli ECRC62 BNILDI_14880 ldtA L,D-transpeptidase cofit 60 99
  Escherichia coli ECRC100 OKFHMN_25140 ldtA L,D-transpeptidase insig. 60 99
  Escherichia coli ECRC101 MCAODC_20250 ldtA L,D-transpeptidase insig. 60 99
  Escherichia coli ECRC102 NIAGMN_22645 ldtA L,D-transpeptidase insig. 60 99
  Escherichia coli ECRC98 JDDGAC_29270 ldtA L,D-transpeptidase insig. 60 99
  Escherichia coli ECRC99 KEDOAH_02970 ldtA L,D-transpeptidase no data 60 99
  Escherichia coli ECOR27 NOLOHH_16050 ldtA L,D-transpeptidase insig. 59 99
  Escherichia coli BL21 ECD_01899 L,D-transpeptidase linking Lpp to murein sig. 60 99
  Escherichia coli BW25113 b1990 erfK conserved protein with NAD(P)-binding Rossmann-fold domain (NCBI) insig. 60 99
  Klebsiella michiganensis M5al BWI76_RS18620 L,D-transpeptidase insig. 60 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3970 L,D-transpeptidase YbiS insig. 58 99
  Enterobacter asburiae PDN3 EX28DRAFT_0563 Uncharacterized protein conserved in bacteria insig. 63 88
  Enterobacter sp. TBS_079 MPMX20_02985 putative L,D-transpeptidase ErfK/SrfK insig. 58 98
  Klebsiella pneumoniae MKP103 KDGMDA_25735 L D-transpeptidase insig. 57 100
  Klebsiella pneumoniae MRSN742743 GJGHJB_01736 ldtA L D-transpeptidase insig. 57 100
  Dickeya dianthicola 67-19 HGI48_RS12815 L,D-transpeptidase family protein insig. 56 99
  Dickeya dianthicola ME23 DZA65_RS13280 L,D-transpeptidase family protein insig. 56 99
  Dickeya dadantii 3937 DDA3937_RS12750 L,D-transpeptidase family protein insig. 56 99
  Pectobacterium carotovorum WPP14 HER17_RS08950 L,D-transpeptidase family protein cofit 58 94
  Rahnella sp. WP5 EX31_RS13880 L,D-transpeptidase family protein insig. 55 99
  Pantoea sp. MT58 IAI47_10850 L,D-transpeptidase family protein sig. 57 94
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS11020 L,D-transpeptidase family protein cofit 56 94
  Serratia liquefaciens MT49 IAI46_11175 L,D-transpeptidase family protein sig. 55 97
  Enterobacter asburiae PDN3 EX28DRAFT_1817 Uncharacterized protein conserved in bacteria insig. 52 94
  Escherichia fergusonii Becca EFB2_02862 putative L,D-transpeptidase YcfS insig. 53 92
  Escherichia coli Nissle 1917 ECOLIN_RS06420 L,D-transpeptidase LdtC insig. 53 92
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3396 L,D-transpeptidase YcfS insig. 51 98
  Escherichia coli ECOR38 HEPCGN_24010 ldtC L,D-transpeptidase LdtC insig. 53 92
  Escherichia coli ECOR27 NOLOHH_21000 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC100 OKFHMN_03475 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC101 MCAODC_22835 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC102 NIAGMN_24355 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC62 BNILDI_19165 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC98 JDDGAC_07135 ldtC L,D-transpeptidase LdtC insig. 52 92
  Escherichia coli ECRC99 KEDOAH_24280 ldtC L,D-transpeptidase LdtC no data 52 92
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02553 putative L,D-transpeptidase YcfS insig. 52 92
  Escherichia coli BL21 ECD_01109 L,D-transpeptidase linking Lpp to murein insig. 52 92
  Escherichia coli BW25113 b1113 ycfS hypothetical protein (NCBI) insig. 52 92
  Klebsiella michiganensis M5al BWI76_RS11200 transpeptidase insig. 51 93
  Enterobacter sp. TBS_079 MPMX20_01794 putative L,D-transpeptidase YcfS insig. 50 94
  Klebsiella pneumoniae MRSN742743 GJGHJB_02045 erfK L D-transpeptidase YnhG insig. 49 98
  Klebsiella pneumoniae MKP103 KDGMDA_18795 L D-transpeptidase insig. 51 91
  Klebsiella pneumoniae MRSN742743 GJGHJB_03141 erfK L D-transpeptidase insig. 51 91
  Klebsiella pneumoniae MKP103 KDGMDA_24140 murein L D-transpeptidase insig. 48 98
  Enterobacter asburiae PDN3 EX28DRAFT_1681 Uncharacterized protein conserved in bacteria insig. 47 93
  Enterobacter sp. TBS_079 MPMX20_01949 putative L,D-transpeptidase YnhG insig. 47 94
o Shewanella loihica PV-4 Shew_1006 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) strong 47 93
  Klebsiella michiganensis M5al BWI76_RS16970 murein L,D-transpeptidase sig. 48 92
  Escherichia coli ECOR27 NOLOHH_17800 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli ECOR38 HEPCGN_05665 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia fergusonii Becca EFB2_02314 putative L,D-transpeptidase YnhG insig. 47 99
  Escherichia coli ECRC100 OKFHMN_27280 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli ECRC101 MCAODC_18130 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli ECRC102 NIAGMN_00785 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli ECRC98 JDDGAC_01855 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli ECRC99 KEDOAH_00830 ldtE L,D-transpeptidase LdtE no data 47 99
  Escherichia coli Nissle 1917 ECOLIN_RS09385 L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli BL21 ECD_01647 murein L,D-transpeptidase no data 47 99
  Escherichia coli ECRC62 BNILDI_16590 ldtE L,D-transpeptidase LdtE insig. 47 99
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02046 putative L,D-transpeptidase YnhG insig. 47 99
  Escherichia coli BW25113 b1678 ynhG hypothetical protein (NCBI) insig. 47 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3564 L,D-transpeptidase YnhG insig. 46 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_14325 peptidase sig. 43 94
o Pseudomonas sp. S08-1 OH686_01780 L,D-transpeptidase strong 40 98
  Pseudomonas sp. BP01 JOY50_RS25815 L,D-transpeptidase family protein insig. 46 82
o Pseudomonas aeruginosa MRSN321 PFGADD_02119 L D-TPase catalytic domain-containing protein strong 39 100
o Pseudomonas aeruginosa PA14 IKLFDK_14500 YkuD domain-containing protein strong 39 100
o Pseudomonas aeruginosa PUPa3 NPBIFN_02159 L D-TPase catalytic domain-containing protein strong 39 100
  Pseudomonas sp. RS175 PFR28_00960 hypothetical protein strong 46 77
  Pseudomonas putida KT2440 PP_2320 conserved exported protein of unknown function strong 44 82
  Pseudomonas syringae pv. syringae B728a Psyr_2070 ErfK/YbiS/YcfS/YnhG strong 43 82
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2070 ErfK/YbiS/YcfS/YnhG insig. 43 82
  Pseudomonas fluorescens FW300-N2E3 AO353_19015 hypothetical protein strong 45 77
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2474 ErfK/YbiS/YcfS/YnhG family protein strong 45 77
  Pseudomonas sp. SVBP6 COO64_RS09790 L,D-transpeptidase family protein cofit 46 76
  Pseudomonas fluorescens FW300-N2C3 AO356_03215 hypothetical protein strong 45 77
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01816 hypothetical protein cofit 44 82
  Pseudomonas protegens RBAN4 FABNJH_22090 ykuD YkuD domain-containing protein insig. 44 82
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2221 ErfK/YbiS/YcfS/YnhG family protein strong 43 82
  Pseudomonas orientalis W4I3 QF045_RS11135 L,D-transpeptidase family protein insig. 44 82
  Pseudomonas sp. DMC3 GFF4626 putative L,D-transpeptidase YbiS cofit 43 82
  Pseudomonas simiae WCS417 PS417_08415 hypothetical protein strong 43 82
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_292 ErfK/YbiS/YcfS/YnhG family protein strong 43 82
  Pseudomonas fluorescens SBW25 PFLU_RS08365 L,D-transpeptidase family protein cofit 43 82
  Pseudomonas fluorescens SBW25-INTG PFLU_RS08365 L,D-transpeptidase family protein strong 43 82
o Pseudomonas segetis P6 ACVTMO_RS13160 L,D-transpeptidase family protein strong 43 82
o Pseudomonas stutzeri RCH2 Psest_2334 Uncharacterized protein conserved in bacteria strong 38 99
  Marinobacter adhaerens HP15 HP15_3824 ErfK/YbiS/YcfS/YnhG family protein strong 36 85
  Sinorhizobium meliloti 1021 SMc00924 hypothetical protein insig. 35 48
  Rhizobium sp. OAE497 ABIE40_RS03580 L,D-transpeptidase insig. 37 48
  Rhizobium sp. OAE497 ABIE40_RS03585 L,D-transpeptidase insig. 35 48
  Bosea sp. OAE506 ABIE41_RS21100 L,D-transpeptidase insig. 38 50
  Sinorhizobium meliloti 1021 SMc00925 signal peptide protein insig. 37 43
  Rhodopseudomonas palustris CGA009 TX73_018480 L,D-transpeptidase insig. 38 49
  Agrobacterium fabrum C58 Atu0669 hypothetical protein insig. 34 48
  Azospirillum sp. SherDot2 MPMX19_04296 hypothetical protein insig. 41 44
  Rhodopseudomonas palustris CGA009 TX73_001100 L,D-transpeptidase cofit 40 43
  Rhodopseudomonas palustris CGA009 TX73_021875 L,D-transpeptidase insig. 38 47
  Bosea sp. OAE506 ABIE41_RS22060 L,D-transpeptidase insig. 44 35
  Xanthobacter sp. DMC5 GFF3051 hypothetical protein insig. 38 43
  Dinoroseobacter shibae DFL-12 Dshi_3496 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) insig. 29 47
  Bosea sp. OAE506 ABIE41_RS14200 L,D-transpeptidase insig. 39 45
  Xanthobacter sp. DMC5 GFF3088 hypothetical protein insig. 40 43
  Rhizobium sp. OAE497 ABIE40_RS26600 L,D-transpeptidase insig. 41 36
  Rhodopseudomonas palustris CGA009 TX73_005880 L,D-transpeptidase insig. 35 47
  Phaeobacter inhibens DSM 17395 PGA1_c34770 Uncharacterized protein conserved in bacteria sig. 32 44
  Rhizobium sp. OAE497 ABIE40_RS12005 L,D-transpeptidase cofit 31 61
  Rhodopseudomonas palustris CGA009 TX73_018715 L,D-transpeptidase family protein no data 37 43
  Dinoroseobacter shibae DFL-12 Dshi_3781 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 41 31
  Dinoroseobacter shibae DFL-12 Dshi_4057 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 41 31
  Rhodopseudomonas palustris CGA009 TX73_024925 L,D-transpeptidase insig. 35 45
  Sinorhizobium meliloti 1021 SMc01200 hypothetical protein sig. 35 44
  Xanthobacter sp. DMC5 GFF4262 hypothetical protein strong 34 45
  Bosea sp. OAE506 ABIE41_RS22050 L,D-transpeptidase sig. 35 47
  Xanthobacter sp. DMC5 GFF1823 hypothetical protein insig. 35 43
  Bosea sp. OAE506 ABIE41_RS10175 L,D-transpeptidase insig. 36 48
  Agrobacterium fabrum C58 Atu2336 hypothetical protein insig. 34 43
  Phaeobacter inhibens DSM 17395 PGA1_c17320 Uncharacterized protein conserved in bacteria strong 31 44
  Rhodopseudomonas palustris CGA009 TX73_008305 L,D-transpeptidase insig. 35 49
  Sinorhizobium meliloti 1021 SMc04338 hypothetical protein insig. 36 43
  Rhodopseudomonas palustris CGA009 TX73_023050 L,D-transpeptidase sig. 45 27
  Xanthobacter sp. DMC5 GFF2633 putative L,D-transpeptidase YbiS insig. 39 35
  Dinoroseobacter shibae DFL-12 Dshi_3406 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) insig. 31 43
  Sinorhizobium meliloti 1021 SMc01575 hypothetical protein strong 32 60
  Sinorhizobium meliloti 1021 SMc02636 hypothetical protein strong 37 43
  Rhizobium sp. OAE497 ABIE40_RS05790 L,D-transpeptidase insig. 33 43
  Phaeobacter inhibens DSM 17395 PGA1_c26350 Uncharacterized protein conserved in bacteria insig. 34 39
  Agrobacterium fabrum C58 Atu2133 hypothetical protein strong 30 60
  Xanthobacter sp. DMC5 GFF4149 hypothetical protein no data 34 43
  Bosea sp. OAE506 ABIE41_RS08190 L,D-transpeptidase insig. 35 43
  Dinoroseobacter shibae DFL-12 Dshi_3595 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 38 35
  Dinoroseobacter shibae DFL-12 Dshi_3933 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 38 35
  Synechococcus elongatus PCC 7942 Synpcc7942_0647 hypothetical protein sig. 33 43
  Rhizobium sp. OAE497 ABIE40_RS13175 L,D-transpeptidase insig. 30 43
  Agrobacterium fabrum C58 Atu3331 hypothetical protein insig. 33 47
  Agrobacterium fabrum C58 Atu0845 hypothetical protein sig. 26 74
  Rhizobium sp. OAE497 ABIE40_RS04660 L,D-transpeptidase insig. 33 45
  Agrobacterium fabrum C58 Atu0844 hypothetical protein insig. 32 43
  Sinorhizobium meliloti 1021 SMc02582 hypothetical protein strong 32 49
  Sinorhizobium meliloti 1021 SM_b21516 hypothetical protein strong 29 48
  Sinorhizobium meliloti 1021 SMc00039 hypothetical protein insig. 33 41
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS03880 L,D-transpeptidase family protein insig. 30 60
  Dinoroseobacter shibae DFL-12 Dshi_3598 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 29 47
  Dinoroseobacter shibae DFL-12 Dshi_3936 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 29 47
  Agrobacterium fabrum C58 Atu5196 hypothetical protein insig. 30 46
  Agrobacterium fabrum C58 Atu0048 hypothetical protein strong 28 44
  Rhizobium sp. OAE497 ABIE40_RS19495 L,D-transpeptidase strong 34 41
  Synechocystis sp000284455 PCC 6803 SGL_RS13015 L,D-transpeptidase sig. 30 45
  Rhizobium sp. OAE497 ABIE40_RS27810 L,D-transpeptidase insig. 28 59
  Rhizobium sp. OAE497 ABIE40_RS04655 L,D-transpeptidase insig. 31 41
  Bosea sp. OAE506 ABIE41_RS06555 L,D-transpeptidase insig. 24 64
  Acinetobacter baumannii LAC-4 RR41_RS05540 L,D-transpeptidase insig. 24 71
  Methylophilus sp. DMC18 GFF919 hypothetical protein insig. 35 35
  Dinoroseobacter shibae DFL-12 Dshi_3607 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 25 59
  Dinoroseobacter shibae DFL-12 Dshi_3945 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) no data 25 59
  Sinorhizobium meliloti 1021 SM_b21573 hypothetical protein insig. 27 64
  Bosea sp. OAE506 ABIE41_RS13445 L,D-transpeptidase insig. 32 30
  Xanthobacter sp. DMC5 GFF2879 hypothetical protein insig. 32 30
  Lysobacter sp. OAE881 ABIE51_RS10880 L,D-transpeptidase insig. 25 64
  Pseudomonas sp. SVBP6 COO64_RS09440 L,D-transpeptidase insig. 29 39
  Sphingobium sp. HT1-2 GFF2124 L,D-transpeptidase cofit 27 44
  Acinetobacter radioresistens SK82 MPMX26_00975 hypothetical protein strong 26 71
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1169.1 ErfK/YbiS/YcfS/YnhG family protein insig. 27 57
  Pseudomonas sp. BP01 JOY50_RS25080 L,D-transpeptidase insig. 31 28
  Pseudomonas stutzeri RCH2 Psest_2644 Uncharacterized protein conserved in bacteria no data 32 32
  Pseudomonas segetis P6 ACVTMO_RS14790 L,D-transpeptidase family protein no data 28 42