Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| Shewanella oneidensis MR-1 | SO0997 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 100 | 100 |
o | Shewanella sp. ANA-3 | Shewana3_3293 | | LysR family transcriptional regulator (RefSeq) | insig. | 77 | 100 |
o | Shewanella amazonensis SB2B | Sama_0274 | | LysR family transcriptional regulator (RefSeq) | insig. | 46 | 96 |
o | Vibrio cholerae E7946 ATCC 55056 | CSW01_17960 | | LysR family transcriptional regulator | insig. | 44 | 96 |
o | Marinobacter adhaerens HP15 | HP15_984 | | transcriptional regulator, LysR family protein | insig. | 39 | 99 |
o | Shewanella loihica PV-4 | Shew_3655 | | LysR family transcriptional regulator (RefSeq) | insig. | 38 | 97 |
o | Alteromonas macleodii MIT1002 | MIT1002_03452 | | HTH-type transcriptional activator CmpR | insig. | 35 | 96 |
| Shewanella sp. ANA-3 | Shewana3_2430 | | LysR family transcriptional regulator (RefSeq) | insig. | 34 | 97 |
| Rhizobium sp. OAE497 | ABIE40_RS14205 | | LysR family transcriptional regulator | insig. | 31 | 83 |
| Shewanella sp. ANA-3 | Shewana3_1691 | | LysR family transcriptional regulator (RefSeq) | insig. | 28 | 94 |
| Pantoea sp. MT58 | IAI47_07570 | | nitrogen assimilation transcriptional regulator NAC | sig. | 27 | 87 |
| Enterobacter sp. TBS_079 | MPMX20_02983 | | HTH-type transcriptional regulator ArgP | strong | 28 | 87 |
| Dickeya dadantii 3937 | DDA3937_RS05335 | | LysR family transcriptional regulator | insig. | 26 | 94 |
| Enterobacter asburiae PDN3 | EX28DRAFT_0565 | | Transcriptional regulator | insig. | 28 | 87 |
| Klebsiella michiganensis M5al | BWI76_RS18630 | | nitrogen assimilation transcriptional regulator | strong | 27 | 87 |
| Shewanella oneidensis MR-1 | SO1916 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 27 | 94 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2469 | | Transcriptional regulator, LysR family | sig. | 30 | 54 |
| Pseudomonas syringae pv. syringae B728a | Psyr_3156 | | transcriptional regulator, LysR family | insig. | 34 | 47 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3156 | | transcriptional regulator, LysR family | sig. | 34 | 47 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1911 | | Hydrogen peroxide-inducible genes activator | insig. | 29 | 56 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS39470 | | LysR family transcriptional regulator | insig. | 26 | 97 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_30245 | | LysR family transcriptional regulator | insig. | 29 | 56 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF2141 | | TcuR: regulates tcuABC genes used in utilization of tricarballylate | insig. | 28 | 84 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF785 | | Transcriptional regulator ligR, LysR family | insig. | 26 | 84 |
| Pseudomonas fluorescens SBW25 | PFLU_RS10960 | | transcriptional regulator LrhA | insig. | 30 | 67 |
| Pseudomonas fluorescens SBW25-INTG | PFLU_RS10960 | | transcriptional regulator LrhA | sig. | 30 | 67 |
| Paraburkholderia graminis OAS925 | ABIE53_000065 | | DNA-binding transcriptional LysR family regulator | insig. | 32 | 47 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS27560 | | transcriptional regulator | insig. | 28 | 67 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS28745 | | LysR family transcriptional regulator | cofit | 33 | 44 |
| Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05796 | | transcriptional regulator, LysR family | insig. | 33 | 44 |
| Pseudomonas syringae pv. syringae B728a | Psyr_3111 | | transcriptional regulator, LysR family | insig. | 30 | 49 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3111 | | transcriptional regulator, LysR family | insig. | 30 | 49 |
| Rhodopseudomonas palustris CGA009 | TX73_013870 | | LysR substrate-binding domain-containing protein | insig. | 29 | 60 |
| Vibrio cholerae E7946 ATCC 55056 | CSW01_10505 | | LysR family transcriptional regulator | insig. | 31 | 53 |
| Burkholderia phytofirmans PsJN | BPHYT_RS18725 | | LysR family transcriptional regulator | insig. | 32 | 44 |
| Vibrio cholerae E7946 ATCC 55056 | CSW01_08130 | | LysR family transcriptional regulator | insig. | 29 | 54 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS13490 | | LysR family transcriptional regulator | insig. | 28 | 82 |
| Shewanella amazonensis SB2B | Sama_0586 | | LysR family transcriptional regulator (RefSeq) | strong | 29 | 64 |
o | Variovorax sp. OAS795 | ABID97_RS25860 | | LysR family transcriptional regulator | insig. | 26 | 83 |
| Sphingomonas koreensis DSMZ 15582 | Ga0059261_3000 | | Transcriptional regulator | insig. | 32 | 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS22265 | | transcriptional regulator | strong | 27 | 61 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS34015 | | LysR family transcriptional regulator | insig. | 27 | 91 |
| Bosea sp. OAE506 | ABIE41_RS23080 | | LysR substrate-binding domain-containing protein | insig. | 33 | 47 |
| Acinetobacter radioresistens SK82 | MPMX26_00326 | | Hca operon transcriptional activator HcaR | cofit | 30 | 59 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS14735 | | LysR family transcripitonal regulator | insig. | 29 | 63 |
| Herbaspirillum seropedicae SmR1 | HSERO_RS05775 | | LysR family transcriptional regulator | insig. | 34 | 51 |
| Variovorax sp. SCN45 | GFF1740 | | Transcriptional regulator, LysR family | insig. | 32 | 48 |
| Burkholderia phytofirmans PsJN | BPHYT_RS10150 | | LysR family transcriptional regulator | insig. | 31 | 47 |
| Kangiella aquimarina DSM 16071 | B158DRAFT_1318 | | Transcriptional regulator | insig. | 25 | 97 |
| Shewanella loihica PV-4 | Shew_3562 | | LysR family transcriptional regulator (RefSeq) | insig. | 33 | 53 |
| Azospirillum sp. SherDot2 | MPMX19_00088 | | HTH-type transcriptional regulator HdfR | insig. | 28 | 49 |
| Rhodanobacter sp. FW510-T8 | OKGIIK_14945 | lysR | LysR family transcriptional regulator | insig. | 23 | 95 |
| Azospirillum brasilense Sp245 | AZOBR_RS00870 | | LysR family transcriptional regulator | insig. | 31 | 47 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_09455 | | LysR family transcriptional regulator | insig. | 26 | 85 |
| Escherichia coli Nissle 1917 | ECOLIN_RS23525 | | LysR family transcriptional regulator | insig. | 26 | 91 |
| Ralstonia solanacearum IBSBF1503 | RALBFv3_RS16915 | | LysR family transcriptional regulator | insig. | 32 | 48 |
| Ralstonia solanacearum UW163 | UW163_RS18270 | | LysR family transcriptional regulator | insig. | 32 | 48 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4421 | | LysR family transcriptional regulator lrhA | no data | 29 | 55 |
| Escherichia fergusonii Becca | EFB2_04525 | | Hydrogen peroxide-inducible genes activator | insig. | 26 | 91 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS32260 | | LysR substrate-binding domain-containing protein | insig. | 36 | 40 |
| Pantoea sp. MT58 | IAI47_00930 | | DNA-binding transcriptional regulator OxyR | strong | 26 | 97 |
| Variovorax sp. SCN45 | GFF3832 | | Transcriptional regulator KPN_02830, LysR family | no data | 32 | 47 |
| Alteromonas macleodii MIT1002 | MIT1002_00554 | | HTH-type transcriptional regulator YofA | insig. | 30 | 45 |
| Pseudomonas fluorescens GW456-L13 | PfGW456L13_1396 | | Cys regulon transcriptional activator CysB | insig. | 31 | 46 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_23985 | | LysR family transcriptional regulator | insig. | 29 | 55 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1500 | | LysR family transcriptional regulator lrhA | insig. | 29 | 55 |
| Enterobacter asburiae PDN3 | EX28DRAFT_0162 | | Transcriptional regulator | insig. | 34 | 47 |
| Agrobacterium fabrum C58 | Atu0654 | | transcriptional regulator, LysR family | strong | 28 | 49 |
| Variovorax sp. OAS795 | ABID97_RS01235 | | LysR family transcriptional regulator | insig. | 27 | 84 |
| Rhodanobacter denitrificans FW104-10B01 | LRK54_RS08130 | | LysR family transcriptional regulator | insig. | 26 | 95 |
| Azospirillum sp. SherDot2 | MPMX19_03927 | | HTH-type transcriptional activator CmpR | insig. | 33 | 54 |
| Ralstonia solanacearum PSI07 | RPSI07_RS16750 | | LysR family transcriptional regulator | insig. | 31 | 53 |
| Enterobacter asburiae PDN3 | EX28DRAFT_3294 | | Transcriptional regulator | insig. | 30 | 54 |
| Enterobacter sp. TBS_079 | MPMX20_04149 | | HTH-type transcriptional regulator DmlR | insig. | 30 | 54 |
| Parabacteroides merdae CL09T00C40 | HMPREF1078_RS00720 | | LysR family transcriptional regulator | insig. | 29 | 59 |
| Rhodanobacter denitrificans MT42 | LRK55_RS07880 | | LysR family transcriptional regulator | cofit | 26 | 95 |
| Escherichia coli ECOR38 | HEPCGN_03485 | nac | nitrogen assimilation transcriptional regulator NAC | cofit | 25 | 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01720 | | HTH-type transcriptional regulator GltC | insig. | 25 | 86 |
| Pseudomonas sp. RS175 | PFR28_02134 | | HTH-type transcriptional regulator CysB | insig. | 29 | 49 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_10440 | | LysR family transcriptional regulator | insig. | 27 | 85 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS19075 | | LysR substrate-binding domain-containing protein | cofit | 32 | 45 |
| Pseudomonas fluorescens FW300-N2E3 | AO353_20245 | | LysR family transcriptional regulator | insig. | 28 | 59 |
| Rhizobium sp. OAE497 | ABIE40_RS03500 | | LysR substrate-binding domain-containing protein | strong | 26 | 62 |
| Escherichia coli BL21 | ECD_01898 | | nitrogen assimilation regulon transcriptional regulator; autorepressor | insig. | 25 | 86 |
| Escherichia coli BW25113 | b1988 | nac | DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI) | strong | 25 | 86 |
| Enterobacter sp. TBS_079 | MPMX20_02334 | | HTH-type transcriptional regulator GltC | insig. | 34 | 45 |
| Cupriavidus basilensis FW507-4G11 | RR42_RS17780 | | LysR family transcriptional regulator | insig. | 34 | 47 |
| Shewanella sp. ANA-3 | Shewana3_3435 | | LysR family transcriptional regulator (RefSeq) | insig. | 31 | 53 |
| Pseudomonas fluorescens FW300-N2C3 | AO356_25410 | | LysR family transcriptional regulator | insig. | 30 | 49 |
| Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1337 | | Cys regulon transcriptional activator CysB | insig. | 30 | 49 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS08630 | | LysR family transcriptional regulator | insig. | 29 | 82 |
| Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3960 | | Phosphonate uptake and metabolism regulator, LysR-family | no data | 27 | 55 |
| Paraburkholderia sabiae LMG 24235 | QEN71_RS34110 | | LysR substrate-binding domain-containing protein | insig. | 25 | 82 |
| Escherichia coli ECRC101 | OKFHMN_25150 | nac | nitrogen assimilation transcriptional regulator NAC | insig. | 25 | 86 |
| Escherichia coli ECRC101 | MCAODC_20240 | nac | nitrogen assimilation transcriptional regulator NAC | insig. | 25 | 86 |
| Escherichia coli ECRC102 | NIAGMN_22655 | nac | nitrogen assimilation transcriptional regulator NAC | no data | 25 | 86 |
| Escherichia coli ECRC62 | BNILDI_14890 | nac | nitrogen assimilation transcriptional regulator NAC | insig. | 25 | 86 |
| Escherichia coli ECRC98 | JDDGAC_29280 | nac | nitrogen assimilation transcriptional regulator NAC | no data | 25 | 86 |
| Escherichia coli ECRC99 | KEDOAH_02960 | nac | nitrogen assimilation transcriptional regulator NAC | no data | 25 | 86 |
| Enterobacter sp. TBS_079 | MPMX20_00697 | | HTH-type transcriptional regulator PgrR | insig. | 28 | 55 |