Conservation of cofitness between Xcc-8004.2886.1 and Xcc-8004.4741.1 in Xanthomonas campestris pv. campestris strain 8004

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.2886.1 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) 1.0 Xcc-8004.4741.1 hypothetical protein 0.32 8
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS10115 chemotaxis protein CheR 0.23 HSERO_RS00355 methyltransferase low > 78
Dechlorosoma suillum PS 0.54 Dsui_1711 methylase of chemotaxis methyl-accepting protein 0.26 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB low > 51
Lysobacter sp. OAE881 0.54 ABIE51_RS16950 CheR family methyltransferase 0.58 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS17405 chemotaxis protein CheR 0.26 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Ralstonia solanacearum UW163 0.50 UW163_RS21745 chemotaxis protein CheR 0.26 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS17980 CheR family methyltransferase 0.28 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Ralstonia solanacearum GMI1000 0.49 RS_RS23905 chemotaxis protein CheR 0.25 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Ralstonia solanacearum PSI07 0.49 RPSI07_RS06240 chemotaxis protein CheR 0.27 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.30 69
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF1665 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) 0.35 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Rahnella sp. WP5 0.46 EX31_RS11365 protein-glutamate O-methyltransferase CheR 0.33 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Enterobacter asburiae PDN3 0.45 EX28DRAFT_0672 Methylase of chemotaxis methyl-accepting proteins 0.34 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Enterobacter sp. TBS_079 0.45 MPMX20_02788 Chemotaxis protein methyltransferase 0.34 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Variovorax sp. SCN45 0.44 GFF5765 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) 0.23 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) low > 127
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS18980 chemotaxis protein CheR 0.23 BPHYT_RS01475 16S rRNA methyltransferase low > 109
Escherichia coli Nissle 1917 0.44 ECOLIN_RS10760 protein-glutamate O-methyltransferase CheR 0.36 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECOR38 0.44 HEPCGN_04565 cheR protein-glutamate O-methyltransferase CheR 0.36 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECRC102 0.44 NIAGMN_01915 cheR protein-glutamate O-methyltransferase CheR 0.36 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia fergusonii Becca 0.44 EFB2_02059 Chemotaxis protein methyltransferase 0.36 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Escherichia coli ECRC101 0.44 MCAODC_19260 cheR protein-glutamate O-methyltransferase CheR 0.36 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECRC98 0.44 JDDGAC_00720 cheR protein-glutamate O-methyltransferase CheR 0.36 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Escherichia coli ECRC99 0.44 KEDOAH_01960 cheR protein-glutamate O-methyltransferase CheR 0.36 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC100 0.44 OKFHMN_26145 cheR protein-glutamate O-methyltransferase CheR 0.36 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Escherichia coli ECRC62 0.44 BNILDI_15375 cheR protein-glutamate O-methyltransferase CheR 0.36 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_01844 Chemotaxis protein methyltransferase 0.36 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Escherichia coli BW25113 0.44 b1884 cheR chemotaxis regulator, protein-glutamate methyltransferase (NCBI) 0.36 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) low > 76
Escherichia coli BL21 0.44 ECD_01855 chemotaxis regulator, protein-glutamate methyltransferase 0.36 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent — —
Escherichia coli ECOR27 0.44 NOLOHH_16585 cheR protein-glutamate O-methyltransferase CheR 0.36 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Pantoea sp. MT58 0.43 IAI47_08325 protein-glutamate O-methyltransferase CheR 0.37 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Erwinia tracheiphila SCR3 0.43 LU632_RS13530 cheR protein-glutamate O-methyltransferase CheR 0.36 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Shewanella sp. ANA-3 0.42 Shewana3_2215 MCP methyltransferase, CheR-type (RefSeq) 0.37 Shewana3_0033 sun protein (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_05745 MCP methyltransferase, CheR-type 0.22 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase low > 103
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28995 CheR family methyltransferase 0.24 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Paraburkholderia graminis OAS925 0.42 ABIE53_000121 chemotaxis protein methyltransferase CheR 0.22 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase low > 113
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1423 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) 0.23 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 79
Shewanella oneidensis MR-1 0.41 SO2124 cheR-1 chemotaxis protein methyltransferase CheR (NCBI ptt file) 0.36 SO0030 sun sun protein (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF1477 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) 0.29 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 90
Pectobacterium carotovorum WPP14 0.41 HER17_RS08115 protein-glutamate O-methyltransferase CheR 0.34 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Dickeya dianthicola ME23 0.41 DZA65_RS14060 protein-glutamate O-methyltransferase CheR 0.35 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Dickeya dadantii 3937 0.41 DDA3937_RS13530 protein-glutamate O-methyltransferase CheR 0.36 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Dickeya dianthicola 67-19 0.41 HGI48_RS13575 protein-glutamate O-methyltransferase CheR 0.35 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Serratia liquefaciens MT49 0.39 IAI46_16020 protein-glutamate O-methyltransferase CheR 0.36 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Castellaniella sp019104865 MT123 0.38 ABCV34_RS05820 CheR family methyltransferase 0.28 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 48
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_00444 chemotaxis protein methyltransferase 0.20 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 67
Caulobacter crescentus NA1000 0.37 CCNA_00444 chemotaxis protein methyltransferase 0.20 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 66
Shewanella loihica PV-4 0.34 Shew_0110 MCP methyltransferase, CheR-type (RefSeq) 0.37 Shew_3738 sun protein (RefSeq) low > 60
Rhodanobacter denitrificans MT42 0.34 LRK55_RS13400 protein-glutamate O-methyltransferase 0.32 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 63
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS13660 protein-glutamate O-methyltransferase 0.32 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_19530 Chemotaxis protein methyltransferase 3 0.38 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Shewanella amazonensis SB2B 0.32 Sama_3498 protein-glutamate O-methyltransferase (RefSeq) 0.36 Sama_0041 sun protein (RefSeq) low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS15575 protein-glutamate O-methyltransferase 0.19 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 48
Azospirillum brasilense Sp245 0.31 AZOBR_RS14250 chemotaxis protein 0.22 AZOBR_RS00235 MFS transporter low > 97
Bosea sp. OAE506 0.31 ABIE41_RS12300 protein-glutamate O-methyltransferase CheR 0.20 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 77
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_1083 Methylase of chemotaxis methyl-accepting proteins 0.18 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases low > 68
Rhodospirillum rubrum S1H 0.30 Rru_A1405 MCP methyltransferase, CheR-type (NCBI) 0.21 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) low > 58
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS22215 protein-glutamate O-methyltransferase CheR 0.35 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_02905 Chemotaxis protein methyltransferase 0.35 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Agrobacterium fabrum C58 0.29 Atu0518 chemotaxis methyltransferase 0.20 Atu2825 Sun protein low > 89
Sinorhizobium meliloti 1021 0.29 SMc03009 chemotaxis protein methyltransferase 0.18 SMc04090 sun protein low > 103
Rhizobium sp. OAE497 0.28 ABIE40_RS02885 protein-glutamate O-methyltransferase CheR 0.19 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 107
Azospirillum sp. SherDot2 0.28 MPMX19_01951 Chemotaxis protein methyltransferase 0.22 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B low > 112
Magnetospirillum magneticum AMB-1 0.23 AMB_RS01630 methyltransferase domain-containing protein 0.19 AMB_RS00745 MFS transporter low > 64
Alteromonas macleodii MIT1002 0.22 MIT1002_01038 Chemotaxis protein methyltransferase 0.37 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B low > 70
Kangiella aquimarina DSM 16071 0.18 B158DRAFT_0184 Methylase of chemotaxis methyl-accepting proteins 0.34 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB low > 40

Not shown: 2 genomes with orthologs for Xcc-8004.2886.1 only; 25 genomes with orthologs for Xcc-8004.4741.1 only