Conservation of cofitness between Xcc-8004.4620.1 and Xcc-8004.2931.1 in Xanthomonas campestris pv. campestris strain 8004

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4620.1 Alanine racemase (EC 5.1.1.1) 1.0 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.67 7
Rhodanobacter denitrificans MT42 0.67 LRK55_RS00355 alanine racemase 0.80 LRK55_RS02935 phosphoglycerate dehydrogenase — —
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS00585 alanine racemase 0.79 LRK54_RS03185 phosphoglycerate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_06670 alr alanine racemase 0.78 OKGIIK_10055 serA phosphoglycerate dehydrogenase — —
Pseudomonas sp. S08-1 0.65 OH686_13695 alanine racemase 0.63 OH686_11280 D-3-phosphoglycerate dehydrogenase low > 80
Pseudomonas putida KT2440 0.64 PP_5269 alanine racemase, PLP-binding 0.64 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase — —
Pseudomonas simiae WCS417 0.62 PS417_27695 alanine racemase 0.64 PS417_27040 3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS29370 alanine racemase 0.64 PFLU_RS28695 phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_814 Alanine racemase (EC 5.1.1.1) 0.64 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas fluorescens SBW25 0.62 PFLU_RS29370 alanine racemase 0.64 PFLU_RS28695 phosphoglycerate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0237 alanine racemase 0.65 Psyr_4852 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0237 alanine racemase 0.65 Psyr_4852 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2146 Alanine racemase (EC 5.1.1.1) 0.64 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_09145 alanine racemase 0.64 AO353_08510 3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_12630 alanine racemase 0.64 AO356_10300 3-phosphoglycerate dehydrogenase — —
Pseudomonas sp. RS175 0.61 PFR28_04397 Alanine racemase 0.64 PFR28_04842 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4393 Alanine racemase (EC 5.1.1.1) 0.64 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas stutzeri RCH2 0.41 Psest_0699 alanine racemase 0.62 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Klebsiella michiganensis M5al 0.40 BWI76_RS01920 alanine racemase 0.63 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF1422 Alanine racemase (EC 5.1.1.1) 0.60 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 78
Escherichia coli Nissle 1917 0.40 ECOLIN_RS23405 alanine racemase 0.61 ECOLIN_RS16210 phosphoglycerate dehydrogenase low > 55
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2013 alanine racemase 0.63 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases low > 40
Escherichia coli ECOR38 0.40 HEPCGN_11540 alr alanine racemase 0.61 HEPCGN_18760 serA phosphoglycerate dehydrogenase low > 87
Escherichia coli ECRC62 0.40 BNILDI_06350 alr alanine racemase 0.61 BNILDI_09905 serA phosphoglycerate dehydrogenase low > 75
Escherichia coli BW25113 0.40 b4053 alr alanine racemase (NCBI) 0.61 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) low > 76
Escherichia fergusonii Becca 0.40 EFB2_04547 Alanine racemase, biosynthetic 0.61 EFB2_00990 D-3-phosphoglycerate dehydrogenase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03990 Alanine racemase, biosynthetic 0.61 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase low > 73
Escherichia coli ECOR27 0.40 NOLOHH_05175 alr alanine racemase 0.61 NOLOHH_11370 serA phosphoglycerate dehydrogenase low > 75
Escherichia coli BL21 0.40 ECD_03925 alanine racemase, biosynthetic, PLP-binding 0.61 ECD_02744 D-3-phosphoglycerate dehydrogenase low > 61
Escherichia coli ECRC102 0.40 NIAGMN_10770 alr alanine racemase 0.61 NIAGMN_17225 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC100 0.40 OKFHMN_12925 alr alanine racemase 0.61 OKFHMN_19460 serA phosphoglycerate dehydrogenase low > 80
Escherichia coli ECRC98 0.40 JDDGAC_16560 alr alanine racemase 0.61 JDDGAC_23100 serA phosphoglycerate dehydrogenase low > 86
Escherichia coli ECRC101 0.40 MCAODC_03435 alr alanine racemase 0.61 MCAODC_09980 serA phosphoglycerate dehydrogenase low > 87
Enterobacter sp. TBS_079 0.40 MPMX20_02698 Alanine racemase, catabolic 0.61 MPMX20_03771 D-3-phosphoglycerate dehydrogenase low > 85
Escherichia coli ECRC99 0.40 KEDOAH_15225 alr alanine racemase 0.61 KEDOAH_08680 serA phosphoglycerate dehydrogenase — —
Dickeya dadantii 3937 0.39 DDA3937_RS17510 alanine racemase 0.61 DDA3937_RS18480 phosphoglycerate dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_01955 alanine racemase 0.61 CSW01_12555 phosphoglycerate dehydrogenase — —
Erwinia tracheiphila SCR3 0.39 LU632_RS13065 dadX catabolic alanine racemase DadX 0.62 LU632_RS05855 serA phosphoglycerate dehydrogenase — —
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4259 alanine racemase 0.62 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Pantoea sp. MT58 0.39 IAI47_08895 catabolic alanine racemase DadX 0.62 IAI47_03725 phosphoglycerate dehydrogenase — —
Dickeya dianthicola 67-19 0.39 HGI48_RS17565 alanine racemase 0.60 HGI48_RS18400 phosphoglycerate dehydrogenase low > 71
Rahnella sp. WP5 0.39 EX31_RS11885 alanine racemase 0.61 EX31_RS21470 phosphoglycerate dehydrogenase low > 89
Pectobacterium carotovorum WPP14 0.39 HER17_RS03655 alanine racemase 0.59 HER17_RS02725 phosphoglycerate dehydrogenase low > 75
Dickeya dianthicola ME23 0.39 DZA65_RS18650 alanine racemase 0.60 DZA65_RS19540 phosphoglycerate dehydrogenase low > 75
Serratia liquefaciens MT49 0.38 IAI46_22945 alanine racemase 0.62 IAI46_20900 phosphoglycerate dehydrogenase low > 86
Shewanella amazonensis SB2B 0.38 Sama_3057 alr alanine racemase (RefSeq) 0.64 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) — —
Shewanella oneidensis MR-1 0.38 SO3916 alr alanine racemase, biosynthetic (NCBI ptt file) 0.63 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.37 Shewana3_0714 alr alanine racemase (RefSeq) 0.63 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) — —
Shewanella loihica PV-4 0.37 Shew_3277 alr alanine racemase (RefSeq) 0.63 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) — —
Alteromonas macleodii MIT1002 0.37 MIT1002_00544 Alanine racemase 0.64 MIT1002_02993 D-3-phosphoglycerate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF1915 Alanine racemase (EC 5.1.1.1) 0.63 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Variovorax sp. SCN45 0.36 GFF5109 Alanine racemase (EC 5.1.1.1) 0.65 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Variovorax sp. OAS795 0.35 ABID97_RS03685 alanine racemase 0.64 ABID97_RS07235 phosphoglycerate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS12035 alanine racemase 0.47 RR42_RS27010 D-3-phosphoglycerate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3382 Alanine racemase, catabolic (EC 5.1.1.1) 0.65 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Castellaniella sp019104865 MT123 0.33 ABCV34_RS06375 alanine racemase 0.51 ABCV34_RS15150 phosphoglycerate dehydrogenase — —
Marinobacter adhaerens HP15 0.33 HP15_630 alanine racemase 0.62 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein — —
Acinetobacter radioresistens SK82 0.31 MPMX26_01153 Alanine racemase 0.61 MPMX26_02773 D-3-phosphoglycerate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS08850 alanine racemase 0.82 ABZR86_RS09635 phosphoglycerate dehydrogenase — —
Lysobacter sp. OAE881 0.25 ABIE51_RS09255 alanine racemase 0.80 ABIE51_RS13245 phosphoglycerate dehydrogenase — —
Azospirillum sp. SherDot2 0.22 MPMX19_06140 Alanine racemase, biosynthetic 0.57 MPMX19_00753 D-3-phosphoglycerate dehydrogenase — —
Bosea sp. OAE506 0.21 ABIE41_RS17795 alanine racemase 0.53 ABIE41_RS08410 phosphoglycerate dehydrogenase low > 77
Azospirillum brasilense Sp245 0.20 AZOBR_RS08350 alanine racemase 0.57 AZOBR_RS10940 3-phosphoglycerate dehydrogenase — —
Rhodospirillum rubrum S1H 0.20 Rru_A0409 Alanine racemase region (NCBI) 0.61 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) — —
Rhizobium sp. OAE497 0.18 ABIE40_RS06295 alanine racemase 0.55 ABIE40_RS30040 phosphoglycerate dehydrogenase low > 107
Bifidobacterium breve UCC2003 0.14 BBR_RS13170 alanine racemase 0.45 BBR_RS16970 phosphoglycerate dehydrogenase — —

Not shown: 27 genomes with orthologs for Xcc-8004.4620.1 only; 0 genomes with orthologs for Xcc-8004.2931.1 only