Conservation of cofitness between Xcc-8004.2326.1 and Xcc-8004.2931.1 in Xanthomonas campestris pv. campestris strain 8004

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.2326.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 1.0 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.65 18
Rhodanobacter denitrificans MT42 0.59 LRK55_RS02130 glutamate 5-kinase 0.80 LRK55_RS02935 phosphoglycerate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS02375 glutamate 5-kinase 0.79 LRK54_RS03185 phosphoglycerate dehydrogenase 0.69 31
Rhodanobacter sp. FW510-T8 0.57 OKGIIK_09420 proB glutamate 5-kinase 0.78 OKGIIK_10055 serA phosphoglycerate dehydrogenase low > 52
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS08685 glutamate 5-kinase 0.82 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.80 69
Lysobacter sp. OAE881 0.53 ABIE51_RS13370 glutamate 5-kinase 0.80 ABIE51_RS13245 phosphoglycerate dehydrogenase low > 62
Alteromonas macleodii MIT1002 0.42 MIT1002_04056 Glutamate 5-kinase 0.64 MIT1002_02993 D-3-phosphoglycerate dehydrogenase low > 70
Shewanella amazonensis SB2B 0.38 Sama_2516 gamma-glutamyl kinase (RefSeq) 0.64 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.88 53
Shewanella loihica PV-4 0.36 Shew_2848 gamma-glutamyl kinase (RefSeq) 0.63 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.98 12
Serratia liquefaciens MT49 0.36 IAI46_04430 glutamate 5-kinase 0.62 IAI46_20900 phosphoglycerate dehydrogenase 0.76 19
Rahnella sp. WP5 0.36 EX31_RS20980 glutamate 5-kinase 0.61 EX31_RS21470 phosphoglycerate dehydrogenase 0.85 76
Shewanella sp. ANA-3 0.36 Shewana3_0954 gamma-glutamyl kinase (RefSeq) 0.63 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.89 60
Escherichia coli ECOR38 0.36 HEPCGN_07780 proB Glutamate 5-kinase 0.61 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.94 32
Escherichia coli ECRC100 0.36 OKFHMN_09675 proB Glutamate 5-kinase 0.61 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.96 16
Shewanella oneidensis MR-1 0.36 SO1121 proB glutamate 5-kinase (NCBI ptt file) 0.63 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.89 58
Escherichia coli ECRC98 0.36 JDDGAC_13300 proB Glutamate 5-kinase 0.61 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.91 4
Klebsiella michiganensis M5al 0.36 BWI76_RS05840 glutamate 5-kinase 0.63 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.82 44
Escherichia coli ECRC101 0.36 MCAODC_00195 proB Glutamate 5-kinase 0.61 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.75 61
Escherichia coli ECOR27 0.36 NOLOHH_02050 proB Glutamate 5-kinase 0.61 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.99 1
Escherichia fergusonii Becca 0.36 EFB2_03778 Glutamate 5-kinase 0.61 EFB2_00990 D-3-phosphoglycerate dehydrogenase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_03398 Glutamate 5-kinase 0.61 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase low > 73
Escherichia coli BL21 0.36 ECD_00239 gamma-glutamate kinase 0.61 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.89 11
Escherichia coli ECRC102 0.36 NIAGMN_07535 proB Glutamate 5-kinase 0.61 NIAGMN_17225 serA phosphoglycerate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS17940 gamma-glutamyl kinase 0.47 RR42_RS27010 D-3-phosphoglycerate dehydrogenase low > 128
Castellaniella sp019104865 MT123 0.36 ABCV34_RS10800 glutamate 5-kinase 0.51 ABCV34_RS15150 phosphoglycerate dehydrogenase — —
Escherichia coli BW25113 0.36 b0242 proB gamma-glutamyl kinase (NCBI) 0.61 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.85 52
Escherichia coli ECRC99 0.36 KEDOAH_18480 proB Glutamate 5-kinase 0.61 KEDOAH_08680 serA phosphoglycerate dehydrogenase — —
Escherichia coli Nissle 1917 0.36 ECOLIN_RS01825 glutamate 5-kinase 0.61 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.90 15
Escherichia coli ECRC62 0.36 BNILDI_00245 proB Glutamate 5-kinase 0.61 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.91 60
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2651 glutamate 5-kinase 0.62 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4114 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.60 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 78
Pantoea sp. MT58 0.35 IAI47_15120 glutamate 5-kinase 0.62 IAI47_03725 phosphoglycerate dehydrogenase 0.87 40
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2800 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.64 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Enterobacter sp. TBS_079 0.35 MPMX20_00927 Glutamate 5-kinase 0.61 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.89 34
Erwinia tracheiphila SCR3 0.35 LU632_RS01185 proB glutamate 5-kinase 0.62 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.82 24
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS25360 glutamate 5-kinase 0.64 PFLU_RS28695 phosphoglycerate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS25360 glutamate 5-kinase 0.64 PFLU_RS28695 phosphoglycerate dehydrogenase low > 109
Pseudomonas simiae WCS417 0.34 PS417_23545 gamma-glutamyl kinase 0.64 PS417_27040 3-phosphoglycerate dehydrogenase 0.66 10
Azospirillum brasilense Sp245 0.34 AZOBR_RS04095 glutamate 5-kinase 0.57 AZOBR_RS10940 3-phosphoglycerate dehydrogenase — —
Variovorax sp. OAS795 0.34 ABID97_RS23400 glutamate 5-kinase 0.64 ABID97_RS07235 phosphoglycerate dehydrogenase — —
Dickeya dadantii 3937 0.34 DDA3937_RS16535 glutamate 5-kinase 0.61 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.64 69
Pseudomonas putida KT2440 0.34 PP_0691 Glutamate 5-kinase 0.64 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.35 46
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4771 Glutamate 5-kinase (EC 2.7.2.11) 0.65 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 79
Dickeya dianthicola 67-19 0.34 HGI48_RS16605 glutamate 5-kinase 0.60 HGI48_RS18400 phosphoglycerate dehydrogenase low > 71
Dickeya dianthicola ME23 0.33 DZA65_RS17695 glutamate 5-kinase 0.60 DZA65_RS19540 phosphoglycerate dehydrogenase low > 75
Pseudomonas sp. RS175 0.33 PFR28_03769 Glutamate 5-kinase 0.64 PFR28_04842 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5103 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.64 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 103
Pseudomonas sp. S08-1 0.33 OH686_16305 Glutamate 5-kinase / RNA-binding C-terminal domain PUA 0.63 OH686_11280 D-3-phosphoglycerate dehydrogenase low > 80
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_15815 gamma-glutamyl kinase 0.64 AO356_10300 3-phosphoglycerate dehydrogenase 0.61 42
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_1472 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.64 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.84 38
Pectobacterium carotovorum WPP14 0.33 HER17_RS04700 glutamate 5-kinase 0.59 HER17_RS02725 phosphoglycerate dehydrogenase 0.88 41
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_0704 glutamate 5-kinase 0.65 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.94 3
Azospirillum sp. SherDot2 0.33 MPMX19_01933 Glutamate 5-kinase 0.57 MPMX19_00753 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_0704 glutamate 5-kinase 0.65 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.90 4
Rhizobium sp. OAE497 0.33 ABIE40_RS18920 glutamate 5-kinase 0.55 ABIE40_RS30040 phosphoglycerate dehydrogenase low > 107
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_11575 glutamate 5-kinase 0.61 CSW01_12555 phosphoglycerate dehydrogenase low > 62
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_14115 gamma-glutamyl kinase 0.64 AO353_08510 3-phosphoglycerate dehydrogenase 0.75 28
Variovorax sp. SCN45 0.32 GFF2515 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.65 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 127
Pseudomonas stutzeri RCH2 0.32 Psest_3384 glutamate 5-kinase 0.62 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Rhodospirillum rubrum S1H 0.30 Rru_A1239 Glutamate 5-kinase, ProB-related (NCBI) 0.61 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF1274 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.63 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 90
Bosea sp. OAE506 0.30 ABIE41_RS07585 glutamate 5-kinase 0.53 ABIE41_RS08410 phosphoglycerate dehydrogenase — —
Acinetobacter radioresistens SK82 0.30 MPMX26_02135 Glutamate 5-kinase 0.61 MPMX26_02773 D-3-phosphoglycerate dehydrogenase low > 36
Marinobacter adhaerens HP15 0.29 HP15_508 gamma-glutamyl kinase 0.62 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein — —
Bifidobacterium breve UCC2003 0.26 BBR_RS19445 glutamate 5-kinase 0.45 BBR_RS16970 phosphoglycerate dehydrogenase 0.72 6

Not shown: 35 genomes with orthologs for Xcc-8004.2326.1 only; 1 genomes with orthologs for Xcc-8004.2931.1 only