Conservation of cofitness between Xcc-8004.2012.1 and Xcc-8004.2931.1 in Xanthomonas campestris pv. campestris strain 8004

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.2012.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 1.0 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.77 15
Lysobacter sp. OAE881 0.72 ABIE51_RS15390 5-(carboxyamino)imidazole ribonucleotide synthase 0.80 ABIE51_RS13245 phosphoglycerate dehydrogenase low > 62
Rhodanobacter sp. FW510-T8 0.63 OKGIIK_03050 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.78 OKGIIK_10055 serA phosphoglycerate dehydrogenase — —
Rhodanobacter denitrificans MT42 0.63 LRK55_RS13530 5-(carboxyamino)imidazole ribonucleotide synthase 0.80 LRK55_RS02935 phosphoglycerate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS13815 5-(carboxyamino)imidazole ribonucleotide synthase 0.79 LRK54_RS03185 phosphoglycerate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS09830 5-(carboxyamino)imidazole ribonucleotide synthase 0.82 ABZR86_RS09635 phosphoglycerate dehydrogenase — —
Pseudomonas sp. S08-1 0.49 OH686_13380 N5-carboxyaminoimidazole ribonucleotide synthase 0.63 OH686_11280 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas sp. RS175 0.47 PFR28_04495 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 PFR28_04842 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_4081 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas stutzeri RCH2 0.46 Psest_4068 phosphoribosylaminoimidazole carboxylase, PurK protein 0.62 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Pseudomonas putida KT2440 0.46 PP_5335 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase — —
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_11075 phosphoribosylaminoimidazole carboxylase 0.64 AO356_10300 3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_747 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas simiae WCS417 0.44 PS417_28115 phosphoribosylaminoimidazole carboxylase 0.64 PS417_27040 3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 PFLU_RS28695 phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 PFLU_RS28695 phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_09935 phosphoribosylaminoimidazole carboxylase 0.64 AO353_08510 3-phosphoglycerate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_2028 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase 0.65 Psyr_4852 D-3-phosphoglycerate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase 0.65 Psyr_4852 D-3-phosphoglycerate dehydrogenase — —
Marinobacter adhaerens HP15 0.43 HP15_2350 phosphoribosylaminoimidazole carboxylase ATPase subunit 0.62 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein — —
Acinetobacter radioresistens SK82 0.42 MPMX26_03050 N5-carboxyaminoimidazole ribonucleotide synthase 0.61 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.91 1
Bosea sp. OAE506 0.38 ABIE41_RS09245 5-(carboxyamino)imidazole ribonucleotide synthase 0.53 ABIE41_RS08410 phosphoglycerate dehydrogenase low > 77
Azospirillum brasilense Sp245 0.36 AZOBR_RS06140 phosphoribosylaminoimidazole carboxylase 0.57 AZOBR_RS10940 3-phosphoglycerate dehydrogenase — —
Rhizobium sp. OAE497 0.36 ABIE40_RS16070 5-(carboxyamino)imidazole ribonucleotide synthase 0.55 ABIE40_RS30040 phosphoglycerate dehydrogenase low > 107
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_00260 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 CSW01_12555 phosphoglycerate dehydrogenase low > 62
Alteromonas macleodii MIT1002 0.34 MIT1002_00522 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.86 56
Rhodospirillum rubrum S1H 0.34 Rru_A1051 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) 0.61 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) — —
Azospirillum sp. SherDot2 0.33 MPMX19_01418 N5-carboxyaminoimidazole ribonucleotide synthase 0.57 MPMX19_00753 D-3-phosphoglycerate dehydrogenase — —
Variovorax sp. SCN45 0.32 GFF5513 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) 0.65 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 127
Kangiella aquimarina DSM 16071 0.31 B158DRAFT_0610 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS00565 5-(carboxyamino)imidazole ribonucleotide synthase 0.51 ABCV34_RS15150 phosphoglycerate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF2770 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.63 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Shewanella loihica PV-4 0.31 Shew_1249 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) 0.63 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.69 17
Variovorax sp. OAS795 0.30 ABID97_RS01700 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 ABID97_RS07235 phosphoglycerate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS03230 phosphoribosylaminoimidazole carboxylase 0.47 RR42_RS27010 D-3-phosphoglycerate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.27 Ac3H11_675 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.65 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Enterobacter asburiae PDN3 0.27 EX28DRAFT_2460 phosphoribosylaminoimidazole carboxylase, PurK protein 0.62 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases — —
Rahnella sp. WP5 0.27 EX31_RS22620 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 EX31_RS21470 phosphoglycerate dehydrogenase 0.86 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF4438 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.60 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 78
Escherichia coli ECRC62 0.27 BNILDI_22260 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 BNILDI_09905 serA phosphoglycerate dehydrogenase low > 75
Serratia liquefaciens MT49 0.27 IAI46_05370 5-(carboxyamino)imidazole ribonucleotide synthase 0.62 IAI46_20900 phosphoglycerate dehydrogenase 0.78 19
Klebsiella michiganensis M5al 0.27 BWI76_RS07065 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.75 48
Bifidobacterium breve UCC2003 0.27 BBR_RS13300 5-(carboxyamino)imidazole ribonucleotide synthase 0.45 BBR_RS16970 phosphoglycerate dehydrogenase low > 34
Escherichia coli Nissle 1917 0.27 ECOLIN_RS03025 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 ECOLIN_RS16210 phosphoglycerate dehydrogenase low > 55
Escherichia coli BL21 0.27 ECD_00472 N5-carboxyaminoimidazole ribonucleotide synthase 0.61 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.53 48
Escherichia coli ECOR38 0.27 HEPCGN_06480 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 HEPCGN_18760 serA phosphoglycerate dehydrogenase low > 87
Escherichia fergusonii Becca 0.26 EFB2_03540 N5-carboxyaminoimidazole ribonucleotide synthase 0.61 EFB2_00990 D-3-phosphoglycerate dehydrogenase low > 86
Escherichia coli BW25113 0.26 b0522 purK phosphoribosylaminoimidazole carboxylase (NCBI) 0.61 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.82 23
Escherichia coli ECOR27 0.26 NOLOHH_00830 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 NOLOHH_11370 serA phosphoglycerate dehydrogenase low > 75
Escherichia coli ECRC102 0.26 NIAGMN_05895 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 NIAGMN_17225 serA phosphoglycerate dehydrogenase — —
Escherichia coli ECRC100 0.26 OKFHMN_07840 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 OKFHMN_19460 serA phosphoglycerate dehydrogenase low > 80
Escherichia coli ECRC98 0.26 JDDGAC_11490 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 JDDGAC_23100 serA phosphoglycerate dehydrogenase low > 86
Escherichia coli ECRC101 0.26 MCAODC_27060 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 MCAODC_09980 serA phosphoglycerate dehydrogenase low > 87
Escherichia coli ECRC99 0.26 KEDOAH_20130 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 KEDOAH_08680 serA phosphoglycerate dehydrogenase — —
Enterobacter sp. TBS_079 0.26 MPMX20_01097 N5-carboxyaminoimidazole ribonucleotide synthase 0.61 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.79 45
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_03159 N5-carboxyaminoimidazole ribonucleotide synthase 0.61 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase low > 73
Dickeya dadantii 3937 0.26 DDA3937_RS15110 5-(carboxyamino)imidazole ribonucleotide synthase 0.61 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.86 8
Pantoea sp. MT58 0.25 IAI47_14355 5-(carboxyamino)imidazole ribonucleotide synthase 0.62 IAI47_03725 phosphoglycerate dehydrogenase 0.71 66
Dickeya dianthicola 67-19 0.25 HGI48_RS15190 5-(carboxyamino)imidazole ribonucleotide synthase 0.60 HGI48_RS18400 phosphoglycerate dehydrogenase 0.69 18
Dickeya dianthicola ME23 0.25 DZA65_RS15995 5-(carboxyamino)imidazole ribonucleotide synthase 0.60 DZA65_RS19540 phosphoglycerate dehydrogenase 0.67 33
Shewanella oneidensis MR-1 0.25 SO3555 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI ptt file) 0.63 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.81 75
Erwinia tracheiphila SCR3 0.25 LU632_RS15250 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.62 LU632_RS05855 serA phosphoglycerate dehydrogenase low > 74
Shewanella sp. ANA-3 0.24 Shewana3_3156 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) 0.63 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.81 72
Shewanella amazonensis SB2B 0.24 Sama_1063 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) 0.64 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.23 HER17_RS06470 5-(carboxyamino)imidazole ribonucleotide synthase 0.59 HER17_RS02725 phosphoglycerate dehydrogenase 0.84 75

Not shown: 27 genomes with orthologs for Xcc-8004.2012.1 only; 0 genomes with orthologs for Xcc-8004.2931.1 only