Conservation of cofitness between SMc01428 and SMc02366 in Sinorhizobium meliloti 1021

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc01428 cold shock transcription regulator protein 1.0 SMc02366 transcriptional regulator 0.31 14
Bosea sp. OAE506 0.84 ABIE41_RS07590 cold-shock protein 0.72 ABIE41_RS21440 response regulator transcription factor low > 77
Rhodopseudomonas palustris CGA009 0.84 TX73_019030 cold-shock protein 0.73 TX73_009945 response regulator transcription factor — —
Caulobacter crescentus NA1000 Δfur 0.79 CCNA_02997 cold shock protein CspA 0.60 CCNA_02845 two-component response regulator low > 67
Caulobacter crescentus NA1000 0.79 CCNA_02997 cold shock protein CspA 0.60 CCNA_02845 two-component response regulator low > 66
Azospirillum brasilense Sp245 0.78 AZOBR_RS03590 cold-shock protein 0.65 AZOBR_RS10800 XRE family transcriptional regulator low > 97
Magnetospirillum magneticum AMB-1 0.78 AMB_RS08040 cold-shock protein 0.63 AMB_RS14570 DNA-binding response regulator — —
Brevundimonas sp. GW460-12-10-14-LB2 0.73 A4249_RS00175 cold-shock protein 0.58 A4249_RS10810 response regulator transcription factor — —
Phaeobacter inhibens DSM 17395 0.66 PGA1_c26780 cold shock protein CspA 0.46 PGA1_c13010 two-component system response regulator low > 62
Pseudomonas simiae WCS417 0.64 PS417_19715 cold-shock protein 0.46 PS417_11825 transcriptional regulator — —
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS23260 cold-shock protein 0.41 RALBFv3_RS20860 DNA-binding response regulator — —
Ralstonia solanacearum UW163 0.60 UW163_RS16510 cold-shock protein 0.41 UW163_RS21995 DNA-binding response regulator — —
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS19675 cold-shock protein 0.40 ABZR87_RS21725 heavy metal response regulator transcription factor low > 80
Ralstonia solanacearum GMI1000 0.60 RS_RS17205 cold-shock protein 0.42 RS_RS20255 DNA-binding response regulator low > 80
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS20855 cold-shock protein 0.42 RR42_RS31535 transcriptional regulator low > 128
Ralstonia solanacearum PSI07 0.60 RPSI07_RS00010 cold-shock protein 0.42 RPSI07_RS02355 DNA-binding response regulator — —
Lysobacter sp. OAE881 0.59 ABIE51_RS13800 cold-shock protein 0.56 ABIE51_RS04165 response regulator transcription factor low > 62
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS07020 cold-shock protein 0.42 HSERO_RS15315 transcriptional regulator — —
Rhodanobacter denitrificans MT42 0.58 LRK55_RS16740 cold-shock protein 0.49 LRK55_RS07810 response regulator transcription factor — —
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS17025 cold-shock protein 0.49 LRK54_RS08060 response regulator transcription factor low > 59
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS02995 cold shock domain-containing protein CspD 0.42 QEN71_RS15305 heavy metal response regulator transcription factor low > 153
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS15720 cold-shock protein 0.45 BPHYT_RS25955 transcriptional regulator — —
Dechlorosoma suillum PS 0.58 Dsui_0007 cold shock protein 0.44 Dsui_2644 heavy metal response regulator low > 51
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_04084 cold-shock DNA-binding protein family 0.41 H281DRAFT_01736 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR — —
Paraburkholderia graminis OAS925 0.58 ABIE53_003308 CspA family cold shock protein 0.42 ABIE53_001506 two-component system copper resistance phosphate regulon response regulator CusR — —
Shewanella amazonensis SB2B 0.57 Sama_2058 cold-shock DNA-binding domain-containing protein (RefSeq) 0.48 Sama_3534 response regulator receiver protein (RefSeq) — —
Shewanella oneidensis MR-1 0.56 SO2628 cspD stress response protein CspD (NCBI ptt file) 0.50 SO4428 DNA-binding response regulator (NCBI ptt file) low > 76
Rhodanobacter sp. FW510-T8 0.56 OKGIIK_07815 cspC cold-shock protein 0.49 OKGIIK_14885 ompR DNA-binding response regulator — —
Shewanella sp. ANA-3 0.56 Shewana3_1751 cold-shock DNA-binding protein family protein (RefSeq) 0.50 Shewana3_0282 two component transcriptional regulator (RefSeq) low > 73
Escherichia coli ECOR27 0.55 NOLOHH_23795 cspE transcription antiterminator/RNA stability regulator CspE 0.44 NOLOHH_24085 cusR copper response regulator transcription factor CusR — —
Escherichia coli ECRC102 0.55 NIAGMN_05475 cspE transcription antiterminator/RNA stability regulator CspE 0.44 NIAGMN_05760 cusR copper response regulator transcription factor CusR — —
Escherichia coli ECOR38 0.55 HEPCGN_00855 cspE transcription antiterminator/RNA stability regulator CspE 0.44 HEPCGN_00585 cusR copper response regulator transcription factor CusR low > 85
Escherichia coli ECRC101 0.55 MCAODC_26635 cspE transcription antiterminator/RNA stability regulator CspE 0.44 MCAODC_26920 cusR copper response regulator transcription factor CusR — —
Escherichia fergusonii Becca 0.55 EFB2_03468 Cold shock-like protein CspE 0.44 EFB2_03523 Transcriptional regulatory protein CusR low > 86
Escherichia coli ECRC99 0.55 KEDOAH_20550 cspE transcription antiterminator/RNA stability regulator CspE 0.44 KEDOAH_20265 cusR copper response regulator transcription factor CusR — —
Escherichia coli ECRC62 0.55 BNILDI_21805 cspE transcription antiterminator/RNA stability regulator CspE 0.44 BNILDI_22095 cusR copper response regulator transcription factor CusR — —
Escherichia coli ECRC101 0.55 OKFHMN_07420 cspE transcription antiterminator/RNA stability regulator CspE 0.44 OKFHMN_07705 cusR copper response regulator transcription factor CusR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03082 Cold shock-like protein CspE 0.44 OHPLBJKB_03138 Transcriptional regulatory protein CusR low > 73
Escherichia coli BW25113 0.55 b0623 cspE cold shock protein E (NCBI) 0.44 b0571 cusR DNA-binding response regulator in two-component regulatory system with CusS (NCBI) low > 76
Escherichia coli BL21 0.55 ECD_00593 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein 0.44 ECD_00532 response regulator in two-component regulatory system with CusS low > 60
Escherichia coli ECRC98 0.55 JDDGAC_11065 cspE transcription antiterminator/RNA stability regulator CspE 0.44 JDDGAC_11350 cusR copper response regulator transcription factor CusR — —
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03400 transcription antiterminator/RNA stability regulator CspE 0.44 ECOLIN_RS03125 copper response regulator transcription factor CusR — —
Rahnella sp. WP5 0.54 EX31_RS23030 transcription antiterminator/RNA stability regulator CspE 0.42 EX31_RS18870 heavy metal response regulator transcription factor low > 89
Shewanella loihica PV-4 0.54 Shew_1564 cold-shock DNA-binding domain-containing protein (RefSeq) 0.51 Shew_0097 two component transcriptional regulator (RefSeq) low > 60
Klebsiella michiganensis M5al 0.54 BWI76_RS07980 cold-shock protein 0.39 BWI76_RS18590 DNA-binding response regulator — —
Mycobacterium tuberculosis H37Rv 0.54 Rv3648c Probable cold shock protein A CspA 0.37 Rv0602c Two component DNA binding transcriptional regulatory protein TcrA — —
Serratia liquefaciens MT49 0.54 IAI46_05870 transcription antiterminator/RNA stability regulator CspE 0.39 IAI46_16745 heavy metal response regulator transcription factor low > 86
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS21685 cold-shock protein 0.46 PFLU_RS12570 response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25 0.52 PFLU_RS21685 cold-shock protein 0.46 PFLU_RS12570 response regulator transcription factor low > 109
Alteromonas macleodii MIT1002 0.51 MIT1002_01832 Cold shock-like protein CspD 0.51 MIT1002_03097 Transcriptional activator protein CopR low > 70
Pseudomonas sp. S08-1 0.50 OH686_17410 Cold shock protein of CSP family 0.42 OH686_22680 Copper-sensing two-component system response regulator CusR — —
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_18795 cold-shock protein CspV 0.38 CSW01_15165 DNA-binding response regulator low > 62
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_1310 Cold shock proteins 0.40 B158DRAFT_1663 heavy metal response regulator low > 40
Pseudomonas stutzeri RCH2 0.48 Psest_1239 Cold shock proteins 0.39 Psest_0611 heavy metal response regulator — —
Acinetobacter radioresistens SK82 0.46 MPMX26_01659 Cold shock-like protein CspG 0.41 MPMX26_03114 Transcriptional regulatory protein CusR low > 36
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS06265 cold-shock protein 0.40 CA265_RS03060 DNA-binding response regulator low > 88

Not shown: 2 genomes with orthologs for SMc01428 only; 34 genomes with orthologs for SMc02366 only