Conservation of cofitness between RR42_RS19740 and RR42_RS37440 in Cupriavidus basilensis FW507-4G11

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS19740 16S rRNA methyltransferase 1.0 RR42_RS37440 phosphogluconate dehydratase 0.35 12
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 RALBFv3_RS16385 phosphogluconate dehydratase low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 UW163_RS17125 phosphogluconate dehydratase — —
Ralstonia solanacearum PSI07 0.63 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.78 RPSI07_RS07320 phosphogluconate dehydratase low > 81
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 ABZR87_RS22920 phosphogluconate dehydratase low > 80
Ralstonia solanacearum GMI1000 0.61 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 RS_RS24620 phosphogluconate dehydratase low > 80
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS23345 16S rRNA methyltransferase 0.63 HSERO_RS05520 phosphogluconate dehydratase — —
Variovorax sp. OAS795 0.45 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.56 ABID97_RS21300 phosphogluconate dehydratase low > 91
Pseudomonas stutzeri RCH2 0.41 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.61 Psest_1892 6-phosphogluconate dehydratase low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2715 rRNA small subunit methyltransferase I 0.60 GFF5495 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Shewanella loihica PV-4 0.41 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.60 Shew_2046 phosphogluconate dehydratase (RefSeq) — —
Marinobacter adhaerens HP15 0.41 HP15_554 tetrapyrrole methylase family protein 0.57 HP15_2174 6-phosphogluconate dehydratase low > 73
Lysobacter sp. OAE881 0.41 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.55 ABIE51_RS01610 phosphogluconate dehydratase low > 62
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.50 CSW01_01480 phosphogluconate dehydratase low > 62
Escherichia fergusonii Becca 0.40 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.59 EFB2_02092 Phosphogluconate dehydratase low > 86
Escherichia coli ECOR38 0.40 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 HEPCGN_04745 edd phosphogluconate dehydratase low > 87
Escherichia coli Nissle 1917 0.40 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 ECOLIN_RS10310 phosphogluconate dehydratase — —
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_17110 methyltransferase 0.61 AO356_05220 phosphogluconate dehydratase — —
Escherichia coli BW25113 0.40 b3146 yraL predicted methyltransferase (NCBI) 0.59 b1851 edd phosphogluconate dehydratase (NCBI) low > 76
Escherichia coli ECRC62 0.40 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 BNILDI_15645 edd phosphogluconate dehydratase low > 75
Escherichia coli BL21 0.40 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.59 ECD_01822 6-phosphogluconate dehydratase low > 61
Escherichia coli ECOR27 0.40 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 NOLOHH_16850 edd phosphogluconate dehydratase low > 75
Escherichia coli ECRC99 0.40 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 KEDOAH_01765 edd phosphogluconate dehydratase — —
Escherichia coli ECRC100 0.40 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 OKFHMN_26340 edd phosphogluconate dehydratase low > 80
Escherichia coli ECRC101 0.40 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 MCAODC_19065 edd phosphogluconate dehydratase low > 87
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_4112 Protein of unknown function UPF0011 0.60 Psyr_1109 6-phosphogluconate dehydratase low > 86
Escherichia coli ECRC98 0.40 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 JDDGAC_00915 edd phosphogluconate dehydratase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_4112 Protein of unknown function UPF0011 0.60 Psyr_1109 6-phosphogluconate dehydratase low > 86
Escherichia coli ECRC102 0.40 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 NIAGMN_01720 edd phosphogluconate dehydratase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.59 OHPLBJKB_01878 Phosphogluconate dehydratase low > 73
Shewanella sp. ANA-3 0.40 Shewana3_3879 hypothetical protein (RefSeq) 0.60 Shewana3_2149 phosphogluconate dehydratase (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.61 Pf6N2E2_2898 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.62 PFLU_RS24330 phosphogluconate dehydratase low > 109
Shewanella oneidensis MR-1 0.39 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.60 SO2487 edd 6-phosphogluconate dehydratase (NCBI ptt file) low > 76
Pseudomonas fluorescens SBW25 0.39 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.62 PFLU_RS24330 phosphogluconate dehydratase low > 109
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.60 Pf1N1B4_601 Phosphogluconate dehydratase (EC 4.2.1.12) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF1521 rRNA small subunit methyltransferase I 0.60 GFF1630 Phosphogluconate dehydratase (EC 4.2.1.12) low > 78
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_15290 methyltransferase 0.61 AO353_03420 phosphogluconate dehydratase low > 101
Pseudomonas simiae WCS417 0.39 PS417_04590 methyltransferase 0.61 PS417_22690 phosphogluconate dehydratase low > 88
Pseudomonas sp. RS175 0.38 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.61 PFR28_00561 Phosphogluconate dehydratase 0.26 35
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.57 ABZR86_RS14690 phosphogluconate dehydratase 0.34 63
Pseudomonas putida KT2440 0.38 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 0.61 PP_1010 phosphogluconate dehydratase — —
Shewanella amazonensis SB2B 0.38 Sama_3353 hypothetical protein (RefSeq) 0.58 Sama_1810 phosphogluconate dehydratase (RefSeq) — —
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.60 PfGW456L13_1889 Phosphogluconate dehydratase (EC 4.2.1.12) low > 87
Klebsiella michiganensis M5al 0.37 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.59 BWI76_RS18100 phosphogluconate dehydratase low > 92
Enterobacter asburiae PDN3 0.37 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.59 EX28DRAFT_0705 6-phosphogluconate dehydratase (EC 4.2.1.12) low > 76
Enterobacter sp. TBS_079 0.37 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.59 MPMX20_02756 Phosphogluconate dehydratase low > 85
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.57 LRK54_RS07880 phosphogluconate dehydratase — —
Rahnella sp. WP5 0.36 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.60 EX31_RS16630 phosphogluconate dehydratase low > 89
Rhodanobacter denitrificans MT42 0.36 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.57 LRK55_RS07610 phosphogluconate dehydratase — —
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.56 OKGIIK_14370 edd phosphogluconate dehydratase — —
Serratia liquefaciens MT49 0.35 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.60 IAI46_23175 phosphogluconate dehydratase low > 86
Agrobacterium fabrum C58 0.32 Atu0302 tetrapyrrole methylase family protein 0.61 Atu0598 phosphogluconate dehydratase low > 89
Alteromonas macleodii MIT1002 0.32 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I 0.60 MIT1002_02405 Phosphogluconate dehydratase low > 70
Rhizobium sp. OAE497 0.31 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.62 ABIE40_RS03190 phosphogluconate dehydratase low > 107
Sinorhizobium meliloti 1021 0.31 SMc00416 hypothetical protein 0.59 SMc03068 phosphogluconate dehydratase low > 103
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.60 CCNA_02134 phosphogluconate dehydratase low > 67
Caulobacter crescentus NA1000 0.28 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.60 CCNA_02134 phosphogluconate dehydratase low > 66
Phaeobacter inhibens DSM 17395 0.21 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.58 PGA1_c28000 phosphogluconate dehydratase Edd — —

Not shown: 24 genomes with orthologs for RR42_RS19740 only; 1 genomes with orthologs for RR42_RS37440 only