Conservation of cofitness between RR42_RS16225 and RR42_RS19530 in Cupriavidus basilensis FW507-4G11

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS16225 cytosol aminopeptidase 1.0 RR42_RS19530 general secretion pathway protein GspF 0.41 11
Ralstonia solanacearum PSI07 0.78 RPSI07_RS12825 leucyl aminopeptidase 0.78 RPSI07_RS09505 type II secretion system protein GspF low > 81
Ralstonia solanacearum GMI1000 0.77 RS_RS12120 cytosol aminopeptidase 0.78 RS_RS15650 type II secretion system protein GspF low > 80
Ralstonia sp. UNC404CL21Col 0.76 ABZR87_RS00150 leucyl aminopeptidase 0.77 ABZR87_RS03460 type II secretion system inner membrane protein GspF low > 80
Ralstonia solanacearum IBSBF1503 0.75 RALBFv3_RS04550 leucyl aminopeptidase 0.78 RALBFv3_RS07755 type II secretion system protein GspF 0.72 8
Ralstonia solanacearum UW163 0.75 UW163_RS09120 leucyl aminopeptidase 0.78 UW163_RS05870 type II secretion system protein GspF — —
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS25205 leucyl aminopeptidase 0.68 QEN71_RS29520 type II secretion system inner membrane protein GspF low > 153
Paraburkholderia graminis OAS925 0.66 ABIE53_001235 leucyl aminopeptidase 0.68 ABIE53_000298 general secretion pathway protein F low > 113
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS04795 cytosol aminopeptidase 0.69 BPHYT_RS19605 general secretion pathway protein F low > 109
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_00123 aminopeptidase A. Metallo peptidase. MEROPS family M17 0.68 H281DRAFT_02354 general secretion pathway protein F low > 103
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_12680 cytosol aminopeptidase 0.40 CSW01_13780 type II secretion system protein GspF — —
Shewanella amazonensis SB2B 0.48 Sama_0795 leucyl aminopeptidase (RefSeq) 0.39 Sama_0171 general secretion pathway protein F (RefSeq) low > 62
Pseudomonas putida KT2440 0.47 PP_0980 Probable cytosol aminopeptidase 0.30 PP_1048 putative protein secretion protein for export low > 96
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_4846 Cytosol aminopeptidase PepA (EC 3.4.11.1) 0.39 PfGW456L13_264 General secretion pathway protein F low > 87
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_04535 aminopeptidase 0.39 AO353_12555 type II secretion system protein GspF low > 101
Pseudomonas fluorescens SBW25 0.47 PFLU_RS05235 leucyl aminopeptidase 0.53 PFLU_RS11900 type II secretion system protein GspF low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS05235 leucyl aminopeptidase 0.53 PFLU_RS11900 type II secretion system protein GspF low > 109
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_5420 Cytosol aminopeptidase PepA (EC 3.4.11.1) 0.51 Pf6N2E2_653 General secretion pathway protein F low > 103
Erwinia tracheiphila SCR3 0.47 LU632_RS20855 pepA leucyl aminopeptidase 0.32 LU632_RS25240 gspF type II secretion system inner membrane protein GspF low > 74
Shewanella sp. ANA-3 0.47 Shewana3_3006 leucyl aminopeptidase (RefSeq) 0.40 Shewana3_0153 general secretion pathway protein F (RefSeq) low > 73
Shewanella loihica PV-4 0.47 Shew_0939 leucyl aminopeptidase (RefSeq) 0.43 Shew_3617 general secretion pathway protein F (RefSeq) low > 60
Shewanella oneidensis MR-1 0.47 SO1368 pepA-2 cytosol aminopeptidase (NCBI ptt file) 0.41 SO0168 gspF general secretion pathway protein F (NCBI ptt file) low > 76
Pseudomonas simiae WCS417 0.46 PS417_05165 cytosol aminopeptidase 0.51 PS417_11305 general secretion pathway protein GspF low > 88
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_17470 aminopeptidase 0.51 AO356_24800 type II secretion system protein GspF low > 104
Alteromonas macleodii MIT1002 0.46 MIT1002_03197 Cytosol aminopeptidase 0.38 MIT1002_03978 General secretion pathway protein F low > 70
Escherichia coli ECRC101 0.46 MCAODC_02295 pepA leucyl aminopeptidase 0.34 MCAODC_15275 gspF type II secretion system inner membrane protein GspF low > 87
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_1167 Leucyl aminopeptidase 0.39 B158DRAFT_0691 general secretion pathway protein F low > 40
Escherichia coli BW25113 0.46 b4260 pepA leucyl aminopeptidase (NCBI) 0.33 b3327 gspF general secretory pathway component, cryptic (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_03776 Cytosol aminopeptidase 0.33 OHPLBJKB_00376 Putative type II secretion system protein F low > 73
Pseudomonas sp. RS175 0.46 PFR28_03528 Cytosol aminopeptidase 0.50 PFR28_01752 Type II secretion system protein F low > 88
Escherichia coli ECRC102 0.46 NIAGMN_09640 pepA leucyl aminopeptidase 0.34 NIAGMN_28595 gspF type II secretion system inner membrane protein GspF — —
Escherichia coli Nissle 1917 0.46 ECOLIN_RS24695 leucyl aminopeptidase 0.33 ECOLIN_RS19070 type II secretion system inner membrane protein GspF low > 55
Escherichia coli BL21 0.46 ECD_04126 multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site-specific recombination factor 0.33 ECD_03178 general secretory pathway component, cryptic low > 61
Escherichia coli ECRC100 0.46 OKFHMN_11790 pepA leucyl aminopeptidase 0.34 OKFHMN_00275 gspF type II secretion system inner membrane protein GspF low > 80
Escherichia coli ECRC98 0.46 JDDGAC_15430 pepA leucyl aminopeptidase 0.34 JDDGAC_30305 gspF type II secretion system inner membrane protein GspF low > 86
Escherichia coli ECOR27 0.46 NOLOHH_04055 pepA leucyl aminopeptidase 0.33 NOLOHH_10985 gspF general secretion pathway protein F low > 75
Escherichia fergusonii Becca 0.46 EFB2_04275 Cytosol aminopeptidase 0.33 EFB2_00496 Putative type II secretion system protein F low > 86
Enterobacter asburiae PDN3 0.46 EX28DRAFT_3267 Leucyl aminopeptidase 0.34 EX28DRAFT_2077 type II secretion system protein F low > 76
Escherichia coli ECOR38 0.46 HEPCGN_09980 pepA leucyl aminopeptidase 0.33 HEPCGN_18060 gspF general secretion pathway protein F low > 87
Dickeya dianthicola ME23 0.46 DZA65_RS02060 leucyl aminopeptidase 0.40 DZA65_RS15670 type II secretion system inner membrane protein GspF low > 75
Dickeya dianthicola 67-19 0.46 HGI48_RS01955 leucyl aminopeptidase 0.40 HGI48_RS14725 type II secretion system inner membrane protein GspF low > 71
Enterobacter sp. TBS_079 0.46 MPMX20_04118 Cytosol aminopeptidase 0.35 MPMX20_01517 Putative type II secretion system protein F low > 85
Dickeya dadantii 3937 0.46 DDA3937_RS01995 leucyl aminopeptidase 0.40 DDA3937_RS14790 type II secretion system inner membrane protein GspF low > 74
Klebsiella michiganensis M5al 0.45 BWI76_RS03040 leucyl aminopeptidase 0.38 BWI76_RS05080 type II secretion protein F low > 92
Rahnella sp. WP5 0.45 EX31_RS04385 leucyl aminopeptidase 0.33 EX31_RS16175 type II secretion system inner membrane protein GspF low > 89
Pseudomonas sp. S08-1 0.45 OH686_07810 Cytosol aminopeptidase PepA 0.40 OH686_11780 type II secretion system protein F — —
Pseudomonas stutzeri RCH2 0.45 Psest_1235 Leucyl aminopeptidase 0.43 Psest_4201 general secretion pathway protein F low > 67
Pectobacterium carotovorum WPP14 0.45 HER17_RS19450 leucyl aminopeptidase 0.41 HER17_RS06695 type II secretion system inner membrane protein GspF low > 75
Marinobacter adhaerens HP15 0.44 HP15_1315 leucyl aminopeptidase 0.46 HP15_1603 general secretion pathway protein F — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF4309 Cytosol aminopeptidase PepA (EC 3.4.11.1) 0.46 GFF1392 General secretion pathway protein F / Type II secretory pathway, component PulF low > 90
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.4446.1 Cytosol aminopeptidase PepA (EC 3.4.11.1) 0.32 Xcc-8004.944.1 General secretion pathway protein F low > 74
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2399 Cytosol aminopeptidase PepA (EC 3.4.11.1) 0.49 Ac3H11_4054 General secretion pathway protein F / Type II secretory pathway, component PulF low > 79
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_11560 pepB leucyl aminopeptidase 0.25 OKGIIK_16220 gspF type II secretion system inner membrane protein GspF low > 52
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19105 leucyl aminopeptidase 0.27 ABZR86_RS13110 type II secretion system inner membrane protein GspF low > 74
Rhodanobacter denitrificans MT42 0.39 LRK55_RS12110 leucyl aminopeptidase 0.26 LRK55_RS09605 type II secretion system inner membrane protein GspF low > 63
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS12375 leucyl aminopeptidase 0.27 LRK54_RS09965 type II secretion system inner membrane protein GspF low > 59
Caulobacter crescentus NA1000 0.32 CCNA_01763 multifunctional aminopeptidase 0.29 CCNA_00174 type II secretion pathway protein F low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_01763 multifunctional aminopeptidase 0.29 CCNA_00174 type II secretion pathway protein F low > 67
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0875 Leucyl aminopeptidase 0.31 Ga0059261_3953 Type II secretory pathway, component PulF low > 68

Not shown: 22 genomes with orthologs for RR42_RS16225 only; 3 genomes with orthologs for RR42_RS19530 only