| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS15480 | | acyl-CoA thioesterase | 1.0 | RR42_RS14080 | | RNA polymerase sigma factor RpoE | 0.47 | 2 |
| Ralstonia solanacearum IBSBF1503 | 0.85 | RALBFv3_RS12905 | | tol-pal system-associated acyl-CoA thioesterase | 0.97 | RALBFv3_RS14445 | | RNA polymerase sigma factor RpoE | low | > 76 |
| Ralstonia solanacearum UW163 | 0.85 | UW163_RS00660 | | tol-pal system-associated acyl-CoA thioesterase | 0.97 | UW163_RS11910 | | RNA polymerase sigma factor RpoE | — | — |
| Ralstonia solanacearum PSI07 | 0.85 | RPSI07_RS20320 | | tol-pal system-associated acyl-CoA thioesterase | 0.97 | RPSI07_RS19015 | | RNA polymerase sigma factor RpoE | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.84 | ABZR87_RS08965 | | tol-pal system-associated acyl-CoA thioesterase | 0.95 | ABZR87_RS10165 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.84 | RS_RS03680 | | tol-pal system-associated acyl-CoA thioesterase | 0.97 | RS_RS05225 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.71 | ABIE53_000886 | | acyl-CoA thioester hydrolase | 0.87 | ABIE53_003043 | | RNA polymerase sigma-70 factor (ECF subfamily) | 0.44 | 23 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.70 | H281DRAFT_04723 | | (3S)-malyl-CoA thioesterase | 0.86 | H281DRAFT_04355 | | RNA polymerase, sigma-24 subunit, RpoE | — | — |
| Herbaspirillum seropedicae SmR1 | 0.60 | HSERO_RS06130 | | 4-hydroxybenzoyl-CoA thioesterase | 0.81 | HSERO_RS09625 | | RNA polymerase sigma factor RpoE | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF5172 | | 4-hydroxybenzoyl-CoA thioesterase family active site | 0.56 | GFF3339 | | RNA polymerase sigma factor RpoE | low | > 90 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS17965 | | YbgC/FadM family acyl-CoA thioesterase | 0.57 | ABID97_RS08330 | | RNA polymerase sigma factor RpoE | low | > 91 |
| Variovorax sp. SCN45 | 0.49 | GFF574 | | Tol-Pal system-associated acyl-CoA thioesterase | 0.57 | GFF3863 | | RNA polymerase sigma factor RpoE | low | > 127 |
| Dechlorosoma suillum PS | 0.48 | Dsui_0483 | | tol-pal system-associated acyl-CoA thioesterase | 0.78 | Dsui_2453 | | RNA polymerase sigma factor RpoE | — | — |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS05060 | | tol-pal system-associated acyl-CoA thioesterase | 0.59 | ABIE51_RS13890 | | RNA polymerase sigma factor RpoE | 0.76 | 32 |
| Acidovorax sp. GW101-3H11 | 0.47 | Ac3H11_3136 | | 4-hydroxybenzoyl-CoA thioesterase family active site | 0.59 | Ac3H11_1573 | | RNA polymerase sigma factor RpoE | — | — |
| Rhodanobacter sp. FW510-T8 | 0.46 | OKGIIK_01855 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.63 | OKGIIK_07900 | rpoE | RNA polymerase sigma factor RpoE | low | > 52 |
| Castellaniella sp019104865 MT123 | 0.46 | ABCV34_RS09830 | | tol-pal system-associated acyl-CoA thioesterase | 0.69 | ABCV34_RS08355 | | RNA polymerase sigma factor RpoE | low | > 48 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS04895 | | tol-pal system-associated acyl-CoA thioesterase | 0.64 | LRK54_RS16940 | | RNA polymerase sigma factor RpoE | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS04675 | | tol-pal system-associated acyl-CoA thioesterase | 0.64 | LRK55_RS16655 | | RNA polymerase sigma factor RpoE | — | — |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS06495 | | tol-pal system-associated acyl-CoA thioesterase | 0.61 | DDA3937_RS15765 | | RNA polymerase sigma factor RpoE | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.44 | MIT1002_01334 | | Acyl-CoA thioester hydrolase YbgC | 0.62 | MIT1002_02719 | | Sigma-24 | — | — |
| Rahnella sp. WP5 | 0.44 | EX31_RS23475 | | tol-pal system-associated acyl-CoA thioesterase | 0.62 | EX31_RS21800 | | RNA polymerase sigma factor RpoE | — | — |
| Pectobacterium carotovorum WPP14 | 0.44 | HER17_RS14885 | | tol-pal system-associated acyl-CoA thioesterase | 0.60 | HER17_RS05780 | | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_10480 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.62 | JDDGAC_25040 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS03920 | | tol-pal system-associated acyl-CoA thioesterase | 0.62 | ECOLIN_RS14560 | | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_04875 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.62 | NIAGMN_19145 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_23260 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.62 | NOLOHH_13050 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_21255 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.62 | BNILDI_11850 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC100 | 0.43 | OKFHMN_06825 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.62 | OKFHMN_21375 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_21140 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.62 | KEDOAH_06845 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_02977 | | Acyl-CoA thioester hydrolase YbgC | 0.62 | OHPLBJKB_01134 | | ECF RNA polymerase sigma-E factor | — | — |
| Escherichia fergusonii Becca | 0.43 | EFB2_03370 | | Acyl-CoA thioester hydrolase YbgC | 0.62 | EFB2_01323 | | ECF RNA polymerase sigma-E factor | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_01445 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.62 | HEPCGN_20520 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli BW25113 | 0.43 | b0736 | ybgC | predicted acyl-CoA thioesterase (NCBI) | 0.62 | b2573 | rpoE | RNA polymerase, sigma 24 (sigma E) factor (NCBI) | — | — |
| Escherichia coli BL21 | 0.43 | ECD_00696 | | acyl-CoA thioester hydrolase | 0.62 | ECD_02467 | | RNA polymerase sigma E factor | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_26045 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.62 | MCAODC_11905 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Serratia liquefaciens MT49 | 0.43 | IAI46_06315 | | tol-pal system-associated acyl-CoA thioesterase | 0.60 | IAI46_19585 | | RNA polymerase sigma factor RpoE | — | — |
| Dinoroseobacter shibae DFL-12 | 0.43 | Dshi_1107 | | Pol-Pal system-associated acyl-CoA thioesterase (RefSeq) | 0.18 | Dshi_3423 | | RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) | low | > 64 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_1137 | | tol-pal system-associated acyl-CoA thioesterase | 0.62 | B158DRAFT_2180 | | RNA polymerase, sigma-24 subunit, RpoE | — | — |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS06890 | | tol-pal system-associated acyl-CoA thioesterase | 0.61 | DZA65_RS16930 | | RNA polymerase sigma factor RpoE | low | > 75 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_2255 | | tol-pal system-associated acyl-CoA thioesterase | 0.61 | EX28DRAFT_0072 | | RNA polymerase sigma factor RpoE | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.42 | ABZR86_RS10825 | | tol-pal system-associated acyl-CoA thioesterase | 0.60 | ABZR86_RS07180 | | RNA polymerase sigma factor RpoE | low | > 74 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS06540 | | tol-pal system-associated acyl-CoA thioesterase | 0.61 | HGI48_RS15850 | | RNA polymerase sigma factor RpoE | low | > 71 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1440.1 | | 4-hydroxybenzoyl-CoA thioesterase family active site | 0.56 | Xcc-8004.3681.1 | | RNA polymerase sigma factor RpoE | low | > 74 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_01365 | | Acyl-CoA thioester hydrolase YbgC | 0.61 | MPMX20_03444 | | ECF RNA polymerase sigma-E factor | — | — |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS16050 | ybgC | tol-pal system-associated acyl-CoA thioesterase | 0.59 | LU632_RS15425 | rpoE | RNA polymerase sigma factor RpoE | low | > 74 |
| Pseudomonas sp. S08-1 | 0.42 | OH686_19140 | | tol-pal system-associated acyl-CoA thioesterase | 0.61 | OH686_20045 | | RNA polymerase sigma factor RpoE | 0.91 | 8 |
| Pantoea sp. MT58 | 0.41 | IAI47_13705 | | tol-pal system-associated acyl-CoA thioesterase | 0.61 | IAI47_04850 | | RNA polymerase sigma factor RpoE | — | — |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS08515 | | acyl-CoA thioesterase YbgC | 0.60 | BWI76_RS21355 | | RNA polymerase sigma factor RpoE | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_1498 | | tol-pal system-associated acyl-CoA thioesterase | 0.61 | Psest_3100 | | RNA polymerase sigma factor RpoE | low | > 67 |
| Pseudomonas fluorescens SBW25-INTG | 0.40 | PFLU_RS24080 | | tol-pal system-associated acyl-CoA thioesterase | 0.60 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.40 | PFLU_RS24080 | | tol-pal system-associated acyl-CoA thioesterase | 0.60 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | low | > 109 |
| Shewanella loihica PV-4 | 0.39 | Shew_1523 | | 4-hydroxybenzoyl-CoA thioesterase (RefSeq) | 0.61 | Shew_1048 | | RNA polymerase sigma factor RpoE (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.38 | Shewana3_2535 | | 4-hydroxybenzoyl-CoA thioesterase (RefSeq) | 0.62 | Shewana3_3032 | | RNA polymerase sigma factor RpoE (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.37 | SO2752 | | conserved hypothetical protein TIGR00051 (NCBI ptt file) | 0.62 | SO1342 | rpoE | RNA polymerase sigma-24 factor (NCBI ptt file) | — | — |
| Shewanella amazonensis SB2B | 0.36 | Sama_2090 | | hypothetical protein (RefSeq) | 0.56 | Sama_0874 | | RNA polymerase sigma factor RpoE (RefSeq) | 0.28 | 61 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.32 | GFF4650 | | 4-hydroxybenzoyl-CoA thioesterase family active site | 0.62 | GFF2107 | | RNA polymerase sigma factor RpoE | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.26 | ABZR88_RS14780 | | thioesterase family protein | 0.26 | ABZR88_RS19220 | | sigma-70 family RNA polymerase sigma factor | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_0373 | | acyl-CoA thioester hydrolase, YbgC/YbaW family | 0.26 | Echvi_2047 | | RNA polymerase sigma factor, sigma-70 family | low | > 79 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.24 | CA264_13075 | | thioesterase | 0.25 | CA264_00665 | | RNA polymerase subunit sigma-24 | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.22 | CA265_RS08080 | | thioesterase | 0.23 | CA265_RS15190 | | RNA polymerase sigma factor | low | > 88 |
| Synechococcus elongatus PCC 7942 | 0.19 | Synpcc7942_1744 | | hypothetical protein | 0.27 | Synpcc7942_1923 | sigG | RNA polymerase sigma factor RpoE | — | — |
Not shown: 8 genomes with orthologs for RR42_RS15480 only; 23 genomes with orthologs for RR42_RS14080 only