| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS20450 | | 16S rRNA methyltransferase | 1.0 | RR42_RS06585 | | GTP pyrophosphokinase | 0.43 | 15 |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS23575 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.76 | RPSI07_RS15685 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS04950 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.77 | ABZR87_RS13745 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS01475 | | 16S rRNA methyltransferase | 0.66 | BPHYT_RS13655 | | GTP pyrophosphokinase | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS00175 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.68 | QEN71_RS05265 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_02237 | | 16S rRNA (cytosine967-C5)-methyltransferase | 0.66 | H281DRAFT_04499 | | GTP pyrophosphokinase | low | > 103 |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS00375 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.76 | RS_RS07930 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_000392 | | 16S rRNA (cytosine967-C5)-methyltransferase | 0.66 | ABIE53_002905 | | GTP pyrophosphokinase | low | > 113 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS03790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.75 | UW163_RS15115 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS09790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.75 | RALBFv3_RS01805 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS00355 | | methyltransferase | 0.59 | HSERO_RS09855 | | GTP pyrophosphokinase | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS14225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.52 | ABCV34_RS08440 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_4461 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.52 | Ac3H11_362 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 79 |
| Dechlorosoma suillum PS | 0.37 | Dsui_0812 | | ribosomal RNA small subunit methyltransferase RsmB | 0.53 | Dsui_2816 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 51 |
| Variovorax sp. SCN45 | 0.36 | GFF5878 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) | 0.49 | GFF403 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF1789 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.50 | GFF4925 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | 0.53 | 8 |
| Escherichia fergusonii Becca | 0.31 | EFB2_00535 | | Ribosomal RNA small subunit methyltransferase B | 0.37 | EFB2_01133 | | GTP pyrophosphokinase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.31 | ECOLIN_RS18875 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | ECOLIN_RS15515 | | GTP diphosphokinase | low | > 55 |
| Enterobacter sp. TBS_079 | 0.31 | MPMX20_04196 | | Ribosomal RNA small subunit methyltransferase B | 0.37 | MPMX20_03653 | | GTP pyrophosphokinase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.31 | GFF2390 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 | 0.37 | GFF4837 | | 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 | low | > 78 |
| Escherichia coli BW25113 | 0.31 | b3289 | rsmB | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | 0.37 | b2784 | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.31 | ECD_03139 | | 16S rRNA m(5)C967 methyltransferase, SAM-dependent | 0.37 | ECD_02629 | | (p)ppGpp synthetase I/GTP pyrophosphokinase | low | > 61 |
| Escherichia coli ECRC62 | 0.31 | BNILDI_02200 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | BNILDI_10630 | relA | GTP diphosphokinase | low | > 75 |
| Escherichia coli ECOR27 | 0.31 | NOLOHH_09320 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | NOLOHH_12125 | relA | GTP diphosphokinase | low | > 75 |
| Pantoea sp. MT58 | 0.31 | IAI47_02280 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | IAI47_04120 | | GTP diphosphokinase | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.31 | OHPLBJKB_00415 | | Ribosomal RNA small subunit methyltransferase B | 0.37 | OHPLBJKB_00947 | | GTP pyrophosphokinase | low | > 73 |
| Escherichia coli ECOR38 | 0.31 | HEPCGN_16350 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | HEPCGN_19500 | relA | GTP diphosphokinase | low | > 87 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_0039 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.36 | EX28DRAFT_2864 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 76 |
| Escherichia coli ECRC102 | 0.31 | NIAGMN_15290 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | NIAGMN_18020 | relA | GTP diphosphokinase | — | — |
| Escherichia coli ECRC101 | 0.31 | MCAODC_08050 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | MCAODC_10775 | relA | GTP diphosphokinase | low | > 87 |
| Escherichia coli ECRC100 | 0.31 | OKFHMN_17520 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | OKFHMN_20250 | relA | GTP diphosphokinase | low | > 80 |
| Escherichia coli ECRC98 | 0.31 | JDDGAC_21150 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | JDDGAC_23915 | relA | GTP diphosphokinase | low | > 86 |
| Escherichia coli ECRC99 | 0.31 | KEDOAH_10620 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | KEDOAH_07880 | relA | GTP diphosphokinase | — | — |
| Klebsiella michiganensis M5al | 0.31 | BWI76_RS25680 | | 16S rRNA m5C967 methyltransferase | 0.37 | BWI76_RS22805 | | GTP diphosphokinase | low | > 92 |
| Marinobacter adhaerens HP15 | 0.31 | HP15_3742 | | Fmu, rRNA SAM-dependent methyltransferase | 0.39 | HP15_791 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | low | > 73 |
| Serratia liquefaciens MT49 | 0.30 | IAI46_23275 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.35 | IAI46_03600 | | GTP diphosphokinase | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.30 | CSW01_00225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.38 | CSW01_12405 | | GTP diphosphokinase | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.30 | Psest_0021 | | ribosomal RNA small subunit methyltransferase RsmB | 0.39 | Psest_1640 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 67 |
| Erwinia tracheiphila SCR3 | 0.30 | LU632_RS22480 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.39 | LU632_RS06350 | relA | GTP diphosphokinase | 0.39 | 69 |
| Dickeya dadantii 3937 | 0.29 | DDA3937_RS19135 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | DDA3937_RS17015 | | GTP diphosphokinase | low | > 74 |
| Shewanella amazonensis SB2B | 0.29 | Sama_0041 | | sun protein (RefSeq) | 0.37 | Sama_1033 | | GTP diphosphokinase (RefSeq) | low | > 62 |
| Pseudomonas fluorescens FW300-N1B4 | 0.29 | Pf1N1B4_1914 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.39 | Pf1N1B4_3508 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_10630 | | 16S rRNA methyltransferase | 0.39 | AO353_02710 | | (p)ppGpp synthetase | low | > 101 |
| Dickeya dianthicola 67-19 | 0.29 | HGI48_RS19225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | HGI48_RS17070 | | GTP diphosphokinase | low | > 71 |
| Pseudomonas simiae WCS417 | 0.29 | PS417_00085 | | 16S rRNA methyltransferase | 0.39 | PS417_20150 | | (p)ppGpp synthetase | — | — |
| Dickeya dianthicola ME23 | 0.29 | DZA65_RS20350 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | DZA65_RS18145 | | GTP diphosphokinase | 0.48 | 5 |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.39 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Pseudomonas putida KT2440 | 0.29 | PP_0066 | | Ribosomal RNA small subunit methyltransferase B | 0.40 | PP_1656 | | ATP:GTP 3'-pyrophosphotransferase | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.29 | Pf6N2E2_4121 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.39 | Pf6N2E2_5723 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | low | > 103 |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.39 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Rahnella sp. WP5 | 0.28 | EX31_RS15985 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.36 | EX31_RS07955 | | GTP diphosphokinase | low | > 89 |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.40 | Psyr_3695 | | RelA/SpoT protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.40 | Psyr_3695 | | RelA/SpoT protein | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.28 | AO356_11275 | | 16S rRNA methyltransferase | 0.39 | AO356_19060 | | (p)ppGpp synthetase | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.28 | PfGW456L13_652 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.40 | PfGW456L13_2035 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | low | > 87 |
| Pseudomonas sp. S08-1 | 0.28 | OH686_12525 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.40 | OH686_18960 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase , (p)ppGpp synthetase I | low | > 80 |
| Pseudomonas sp. RS175 | 0.28 | PFR28_04663 | | Ribosomal RNA small subunit methyltransferase B | 0.39 | PFR28_03223 | | GTP pyrophosphokinase | low | > 88 |
| Pectobacterium carotovorum WPP14 | 0.28 | HER17_RS02215 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | HER17_RS04115 | | GTP diphosphokinase | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.27 | MIT1002_00018 | | Ribosomal RNA small subunit methyltransferase B | 0.37 | MIT1002_00794 | | GTP pyrophosphokinase | low | > 70 |
| Shewanella loihica PV-4 | 0.27 | Shew_3738 | | sun protein (RefSeq) | 0.37 | Shew_1202 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_0033 | | sun protein (RefSeq) | 0.37 | Shewana3_1111 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.26 | B158DRAFT_0396 | | ribosomal RNA small subunit methyltransferase RsmB | 0.34 | B158DRAFT_2277 | | (p)ppGpp synthetase, RelA/SpoT family | 0.36 | 8 |
| Shewanella oneidensis MR-1 | 0.26 | SO0030 | sun | sun protein (NCBI ptt file) | 0.37 | SO3455 | relA | GTP pyrophosphokinase (NCBI ptt file) | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.25 | MPMX26_03021 | | Ribosomal RNA small subunit methyltransferase B | 0.33 | MPMX26_00539 | | GTP pyrophosphokinase | low | > 36 |
Not shown: 6 genomes with orthologs for RR42_RS20450 only; 12 genomes with orthologs for RR42_RS06585 only