| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS34650 | | LacI family transcriptional regulator | 1.0 | RR42_RS02060 | | nucleotide-binding protein | 0.42 | 18 |
| Variovorax sp. OAS795 | 0.44 | ABID97_RS03270 | | LacI family DNA-binding transcriptional regulator | 0.44 | ABID97_RS23710 | | RNase adapter RapZ | low | > 91 |
| Variovorax sp. SCN45 | 0.44 | GFF3450 | | Transcriptional regulator, LacI family | 0.44 | GFF2356 | | RNase adapter protein RapZ | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.24 | ABZR86_RS01690 | | LacI family DNA-binding transcriptional regulator | 0.38 | ABZR86_RS19800 | | RNase adapter RapZ | low | > 74 |
| Enterobacter sp. TBS_079 | 0.24 | MPMX20_00737 | | Maltose regulon regulatory protein MalI | 0.39 | MPMX20_04111 | | RNase adapter protein RapZ | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.23 | HER17_RS21525 | | ribose operon transcriptional repressor RbsR | 0.39 | HER17_RS20075 | | RNase adapter RapZ | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.23 | CSW01_14670 | | transcriptional repressor PurR | 0.38 | CSW01_12830 | | RNase adaptor protein RapZ | low | > 62 |
| Serratia liquefaciens MT49 | 0.23 | IAI46_25050 | | ribose operon transcriptional repressor RbsR | 0.39 | IAI46_22485 | | RNase adapter RapZ | low | > 86 |
| Klebsiella michiganensis M5al | 0.23 | BWI76_RS00765 | | DNA-binding transcriptional regulator CytR | 0.40 | BWI76_RS25280 | | RNase adaptor protein RapZ | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.23 | GFF2316 | | Transcriptional (co)regulator CytR | 0.39 | GFF2949 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 78 |
| Escherichia coli ECRC98 | 0.23 | JDDGAC_17350 | cytR | DNA-binding transcriptional regulator CytR | 0.38 | JDDGAC_21550 | rapZ | RNase adapter RapZ | low | > 86 |
| Escherichia coli ECRC99 | 0.23 | KEDOAH_14435 | cytR | DNA-binding transcriptional regulator CytR | 0.38 | KEDOAH_10225 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.23 | OHPLBJKB_04117 | | HTH-type transcriptional repressor CytR | 0.38 | OHPLBJKB_00495 | | RNase adapter protein RapZ | low | > 73 |
| Escherichia coli BL21 | 0.23 | ECD_03819 | | Anti-activator for CytR-CRP nucleoside utilization regulon | 0.38 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | low | > 61 |
| Escherichia coli ECOR38 | 0.23 | HEPCGN_12370 | cytR | DNA-binding transcriptional regulator CytR | 0.38 | HEPCGN_16800 | rapZ | RNase adapter RapZ | low | > 87 |
| Dickeya dadantii 3937 | 0.23 | DDA3937_RS00055 | | ribose operon transcriptional repressor RbsR | 0.39 | DDA3937_RS01515 | | RNase adapter RapZ | low | > 74 |
| Escherichia coli Nissle 1917 | 0.23 | ECOLIN_RS22650 | | DNA-binding transcriptional regulator CytR | 0.38 | ECOLIN_RS18440 | | RNase adapter RapZ | 0.69 | 22 |
| Escherichia coli ECRC102 | 0.23 | NIAGMN_11480 | cytR | DNA-binding transcriptional regulator CytR | 0.38 | NIAGMN_15685 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECRC101 | 0.23 | MCAODC_04225 | cytR | DNA-binding transcriptional regulator CytR | 0.38 | MCAODC_08445 | rapZ | RNase adapter RapZ | low | > 87 |
| Escherichia coli ECRC62 | 0.23 | BNILDI_05660 | cytR | DNA-binding transcriptional regulator CytR | 0.38 | BNILDI_01810 | rapZ | RNase adapter RapZ | low | > 75 |
| Escherichia coli ECRC100 | 0.23 | OKFHMN_13725 | cytR | DNA-binding transcriptional regulator CytR | 0.38 | OKFHMN_17925 | rapZ | RNase adapter RapZ | low | > 80 |
| Escherichia coli ECOR27 | 0.23 | NOLOHH_05870 | cytR | DNA-binding transcriptional regulator CytR | 0.38 | NOLOHH_09725 | rapZ | RNase adapter RapZ | low | > 75 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS09955 | | LacI family DNA-binding transcriptional regulator | 0.78 | ABZR87_RS07035 | | RNase adapter RapZ | low | > 80 |
| Escherichia coli BW25113 | 0.23 | b3934 | cytR | DNA-binding transcriptional dual regulator (NCBI) | 0.38 | b3205 | yhbJ | hypothetical protein (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.23 | EFB2_04684 | | HTH-type transcriptional repressor CytR | 0.38 | EFB2_00618 | | RNase adapter protein RapZ | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.23 | AO353_20830 | | LacI family transcriptional regulator | 0.39 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | low | > 101 |
| Ralstonia solanacearum GMI1000 | 0.23 | RS_RS05020 | | LacI family transcriptional regulator | 0.78 | RS_RS01995 | | RNase adaptor protein RapZ | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.23 | RPSI07_RS19225 | | LacI family transcriptional regulator | 0.78 | RPSI07_RS22155 | | RNase adapter RapZ | low | > 81 |
| Ralstonia solanacearum UW163 | 0.22 | UW163_RS11705 | | LacI family transcriptional regulator | 0.78 | UW163_RS02435 | | RNase adapter RapZ | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.22 | RALBFv3_RS14240 | | LacI family transcriptional regulator | 0.78 | RALBFv3_RS11145 | | RNase adapter RapZ | low | > 76 |
| Dickeya dianthicola 67-19 | 0.22 | HGI48_RS21310 | | ribose operon transcriptional repressor RbsR | 0.39 | HGI48_RS01430 | | RNase adapter RapZ | low | > 71 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.22 | H281DRAFT_03227 | | transcriptional regulator, LacI family | 0.58 | H281DRAFT_01931 | | UPF0042 nucleotide-binding protein | low | > 103 |
| Dinoroseobacter shibae DFL-12 | 0.22 | Dshi_2238 | | transcriptional regulator, LacI family (RefSeq) | 0.27 | Dshi_0209 | | hypothetical protein (RefSeq) | low | > 64 |
| Rhodanobacter denitrificans FW104-10B01 | 0.22 | LRK54_RS08670 | | LacI family transcriptional regulator | 0.37 | LRK54_RS12860 | | RNase adapter RapZ | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.22 | LRK55_RS08435 | | LacI family DNA-binding transcriptional regulator | 0.37 | LRK55_RS12560 | | RNase adapter RapZ | low | > 63 |
| Herbaspirillum seropedicae SmR1 | 0.22 | HSERO_RS11495 | | LacI family transcription regulator | 0.53 | HSERO_RS19535 | | nucleotide-binding protein | low | > 78 |
| Lysobacter sp. OAE881 | 0.22 | ABIE51_RS08800 | | LacI family DNA-binding transcriptional regulator | 0.37 | ABIE51_RS15975 | | RNase adapter RapZ | low | > 62 |
| Pantoea sp. MT58 | 0.22 | IAI47_00375 | | ribose operon transcriptional repressor RbsR | 0.39 | IAI47_17200 | | RNase adapter RapZ | low | > 76 |
| Paraburkholderia graminis OAS925 | 0.22 | ABIE53_004064 | | DNA-binding LacI/PurR family transcriptional regulator | 0.58 | ABIE53_000714 | | UPF0042 nucleotide-binding protein | low | > 113 |
| Pseudomonas fluorescens FW300-N1B4 | 0.22 | Pf1N1B4_6032 | | Ribose operon repressor | 0.40 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.22 | GFF4377 | | Galactose operon repressor, GalR-LacI family of transcriptional regulators | 0.42 | GFF828 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 90 |
| Sphingomonas koreensis DSMZ 15582 | 0.21 | Ga0059261_2309 | | transcriptional regulator, LacI family | 0.26 | Ga0059261_0917 | | Predicted P-loop-containing kinase | low | > 68 |
| Paraburkholderia sabiae LMG 24235 | 0.21 | QEN71_RS38555 | | substrate-binding domain-containing protein | 0.60 | QEN71_RS01735 | | RNase adapter RapZ | low | > 153 |
| Pseudomonas fluorescens FW300-N2E2 | 0.21 | Pf6N2E2_164 | | Ribose operon repressor | 0.40 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 103 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.21 | Xcc-8004.5254.1 | | Transcriptional regulator, LacI family | 0.37 | Xcc-8004.1658.1 | | hypothetical protein | low | > 74 |
| Pseudomonas sp. RS175 | 0.21 | PFR28_02734 | | Ribose operon repressor | 0.39 | PFR28_00170 | | RNase adapter protein RapZ | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.21 | PFLU_RS15195 | | LacI family transcriptional regulator | 0.39 | PFLU_RS04385 | | RNase adapter RapZ | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.21 | PFLU_RS15195 | | LacI family transcriptional regulator | 0.39 | PFLU_RS04385 | | RNase adapter RapZ | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.21 | Psyr_2154 | | transcriptional regulator, LacI family | 0.38 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.21 | Psyr_2154 | | transcriptional regulator, LacI family | 0.38 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | low | > 86 |
| Azospirillum sp. SherDot2 | 0.21 | MPMX19_05875 | | Catabolite control protein A | 0.30 | MPMX19_02622 | | Nucleotide-binding protein | low | > 112 |
| Pseudomonas fluorescens GW456-L13 | 0.20 | PfGW456L13_3909 | | Ribose operon repressor | 0.39 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 87 |
| Acidovorax sp. GW101-3H11 | 0.20 | Ac3H11_1840 | | Ribose operon repressor | 0.44 | Ac3H11_3459 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 79 |
| Pseudomonas simiae WCS417 | 0.20 | PS417_13650 | | LacI family transcriptional regulator | 0.38 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.20 | OKGIIK_15435 | | LacI family transcriptional regulator | 0.37 | OKGIIK_02250 | rapZ | RNase adapter RapZ | low | > 52 |
| Bifidobacterium breve UCC2003 | 0.18 | BBR_RS17775 | | LacI family DNA-binding transcriptional regulator | 0.29 | BBR_RS15525 | | RNase adapter RapZ | low | > 34 |
| Shewanella loihica PV-4 | 0.17 | Shew_1111 | | LacI family transcription regulator (RefSeq) | 0.39 | Shew_3314 | | hypothetical protein (RefSeq) | — | — |
| Mycobacterium tuberculosis H37Rv | 0.16 | Rv3575c | | Transcriptional regulatory protein (probably LacI-family) | 0.30 | Rv1421 | | Conserved protein | low | > 58 |
| Pseudomonas stutzeri RCH2 | 0.15 | Psest_3356 | | D-fructose-responsive transcription factor | 0.39 | Psest_3316 | | Predicted P-loop-containing kinase | low | > 67 |
Not shown: 11 genomes with orthologs for RR42_RS34650 only; 24 genomes with orthologs for RR42_RS02060 only