Conservation of cofitness between QEN71_RS03230 and QEN71_RS06455 in Paraburkholderia sabiae LMG 24235

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS03230 YggT family protein 1.0 QEN71_RS06455 RIP metalloprotease RseP 0.71 4
Paraburkholderia bryophila 376MFSha3.1 0.86 H281DRAFT_04033 YggT family protein 0.81 H281DRAFT_00617 site-2 protease. Metallo peptidase. MEROPS family M50B
Burkholderia phytofirmans PsJN 0.81 BPHYT_RS15440 membrane protein 0.82 BPHYT_RS12105 zinc metalloprotease
Paraburkholderia graminis OAS925 0.81 ABIE53_003258 YggT family protein 0.79 ABIE53_002496 regulator of sigma E protease low > 113
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS18295 YggT family protein 0.39 ABZR87_RS11860 RIP metalloprotease RseP low > 80
Ralstonia solanacearum GMI1000 0.53 RS_RS23805 YggT family protein 0.39 RS_RS07080 RIP metalloprotease RseP low > 80
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS36110 membrane protein 0.43 RR42_RS11840 zinc metalloprotease low > 128
Ralstonia solanacearum PSI07 0.49 RPSI07_RS06140 YggT family protein 0.39 RPSI07_RS17065 RIP metalloprotease RseP low > 81
Castellaniella sp019104865 MT123 0.49 ABCV34_RS10650 YggT family protein 0.35 ABCV34_RS04075 RIP metalloprotease RseP
Ralstonia solanacearum UW163 0.40 UW163_RS21640 YggT family protein 0.41 UW163_RS13740 RIP metalloprotease RseP
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS17510 YggT family protein 0.41 RALBFv3_RS00410 RIP metalloprotease RseP low > 76
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_02445 hypothetical protein 0.30 CSW01_11475 zinc metalloprotease
Klebsiella michiganensis M5al 0.31 BWI76_RS24105 resistance protein 0.32 BWI76_RS05250 zinc metallopeptidase RseP
Alteromonas macleodii MIT1002 0.31 MIT1002_03063 YGGT family protein 0.31 MIT1002_01011 Regulator of sigma E protease low > 70
Enterobacter asburiae PDN3 0.30 EX28DRAFT_2990 Predicted integral membrane protein 0.32 EX28DRAFT_3764 RIP metalloprotease RseP
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_08170 hypothetical protein 0.33 AO353_16495 zinc metallopeptidase RseP 0.30 67
Enterobacter sp. TBS_079 0.30 MPMX20_03810 hypothetical protein 0.31 MPMX20_00860 Regulator of sigma-E protease RseP
Pectobacterium carotovorum WPP14 0.29 HER17_RS03800 YggT family protein 0.30 HER17_RS16300 sigma E protease regulator RseP low > 75
Pantoea sp. MT58 0.29 IAI47_03590 YggT family protein 0.30 IAI47_15495 sigma E protease regulator RseP
Escherichia coli Nissle 1917 0.29 ECOLIN_RS16420 osmotic shock tolerance protein YggT 0.33 ECOLIN_RS00960 sigma E protease regulator RseP
Escherichia coli ECRC99 0.29 KEDOAH_08890 yggT osmotic shock tolerance protein YggT 0.33 KEDOAH_17980 rseP sigma E protease regulator RseP
Escherichia fergusonii Becca 0.29 EFB2_00950 hypothetical protein 0.33 EFB2_03868 Regulator of sigma-E protease RseP
Escherichia coli ECRC100 0.29 OKFHMN_19250 yggT osmotic shock tolerance protein YggT 0.33 OKFHMN_10175 rseP sigma E protease regulator RseP
Escherichia coli BW25113 0.29 b2952 yggT predicted inner membrane protein (NCBI) 0.33 b0176 yaeL zinc metallopeptidase (NCBI)
Escherichia coli ECRC101 0.29 MCAODC_09770 yggT osmotic shock tolerance protein YggT 0.33 MCAODC_00690 rseP sigma E protease regulator RseP
Escherichia coli ECRC102 0.29 NIAGMN_17015 yggT osmotic shock tolerance protein YggT 0.33 NIAGMN_08025 rseP sigma E protease regulator RseP
Escherichia coli ECRC98 0.29 JDDGAC_22880 yggT osmotic shock tolerance protein YggT 0.33 JDDGAC_13770 rseP sigma E protease regulator RseP
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00764 hypothetical protein 0.33 OHPLBJKB_03487 Regulator of sigma-E protease RseP
Escherichia coli BL21 0.29 ECD_02782 putative inner membrane protein; compensates for loss in K+ uptake 0.33 ECD_00174 inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease
Escherichia coli ECRC62 0.29 BNILDI_09700 yggT osmotic shock tolerance protein YggT 0.33 BNILDI_09150 rseP sigma E protease regulator RseP
Escherichia coli ECOR27 0.29 NOLOHH_11120 yggT osmotic shock tolerance protein YggT 0.33 NOLOHH_02520 rseP sigma E protease regulator RseP
Dechlorosoma suillum PS 0.29 Dsui_0601 putative integral membrane protein 0.36 Dsui_2687 RIP metalloprotease RseP
Escherichia coli ECOR38 0.29 HEPCGN_18555 yggT osmotic shock tolerance protein YggT 0.33 HEPCGN_08130 rseP sigma E protease regulator RseP
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF3055 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.32 GFF46 Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage
Variovorax sp. SCN45 0.28 GFF3880 Cell division integral membrane protein, YggT and half-length relatives 0.41 GFF386 Membrane-associated zinc metalloprotease low > 127
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_2340 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.34 Pf1N1B4_3091 Membrane-associated zinc metalloprotease
Acidovorax sp. GW101-3H11 0.28 Ac3H11_1537 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.37 Ac3H11_425 Membrane-associated zinc metalloprotease
Shewanella oneidensis MR-1 0.28 SO3355 conserved hypothetical protein (NCBI ptt file) 0.34 SO1636 membrane-associated zinc metalloprotease, putative (NCBI ptt file)
Marinobacter adhaerens HP15 0.28 HP15_286 protein of unknown function YGGT 0.31 HP15_1173 membrane-associated zinc metalloprotease low > 73
Pseudomonas stutzeri RCH2 0.28 Psest_0282 Predicted integral membrane protein 0.34 Psest_2835 RIP metalloprotease RseP
Variovorax sp. OAS795 0.28 ABID97_RS08415 YggT family protein 0.42 ABID97_RS17135 RIP metalloprotease RseP low > 91
Serratia liquefaciens MT49 0.28 IAI46_21420 YggT family protein 0.31 IAI46_20225 sigma E protease regulator RseP
Rahnella sp. WP5 0.28 EX31_RS02695 YggT family protein 0.31 EX31_RS13000 sigma E protease regulator RseP
Erwinia tracheiphila SCR3 0.27 LU632_RS05455 YggT family protein 0.31 LU632_RS19930 rseP sigma E protease regulator RseP 0.43 58
Dickeya dianthicola 67-19 0.27 HGI48_RS17355 YggT family protein 0.29 HGI48_RS05150 sigma E protease regulator RseP low > 71
Dickeya dadantii 3937 0.27 DDA3937_RS17310 YggT family protein 0.29 DDA3937_RS05150 sigma E protease regulator RseP low > 74
Dickeya dianthicola ME23 0.27 DZA65_RS18445 YggT family protein 0.29 DZA65_RS05490 sigma E protease regulator RseP low > 75
Shewanella amazonensis SB2B 0.27 Sama_2479 protein of unknown function YGGT (RefSeq) 0.34 Sama_1146 membrane-associated zinc metalloprotease, putative (RefSeq)
Pseudomonas sp. S08-1 0.27 OH686_10985 YggT-like protein 0.31 OH686_06450 RIP metalloprotease RseP
Shewanella loihica PV-4 0.27 Shew_1135 protein of unknown function YGGT (RefSeq) 0.31 Shew_2628 putative membrane-associated zinc metalloprotease (RefSeq)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0475 Protein of unknown function YGGT 0.33 Psyr_1350 site-2 protease, Metallo peptidase, MEROPS family M50B low > 86
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0475 Protein of unknown function YGGT 0.33 Psyr_1350 site-2 protease, Metallo peptidase, MEROPS family M50B low > 86
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS01900 hypothetical protein 0.41 HSERO_RS10910 peptidase
Shewanella sp. ANA-3 0.26 Shewana3_1192 protein of unknown function YGGT (RefSeq) 0.34 Shewana3_2808 peptidase RseP (RefSeq)
Pseudomonas fluorescens SBW25 0.25 PFLU_RS28380 YggT family protein 0.33 PFLU_RS06310 sigma E protease regulator RseP low > 109
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS28380 YggT family protein 0.33 PFLU_RS06310 sigma E protease regulator RseP low > 109
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_4599 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.34 Pf6N2E2_3062 Membrane-associated zinc metalloprotease low > 103
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_13415 hypothetical protein 0.34 AO356_06005 zinc metallopeptidase RseP low > 104
Pseudomonas simiae WCS417 0.25 PS417_26735 membrane protein 0.33 PS417_06245 zinc metallopeptidase RseP
Pseudomonas putida KT2440 0.25 PP_5096 putative factor involved in shape determination 0.32 PP_1598 regulatory intramembrane protein RIP zinc protease low > 96
Pseudomonas sp. RS175 0.24 PFR28_04244 hypothetical protein 0.34 PFR28_00403 Regulator of sigma-E protease RseP low > 88
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_1009 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.33 PfGW456L13_4701 Membrane-associated zinc metalloprotease low > 87
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF4919 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) 0.37 GFF4908 Membrane-associated zinc metalloprotease
Acinetobacter radioresistens SK82 0.16 MPMX26_00573 hypothetical protein 0.32 MPMX26_01300 Regulator of sigma-E protease RseP low > 36
Kangiella aquimarina DSM 16071 0.15 B158DRAFT_0198 Predicted integral membrane protein 0.29 B158DRAFT_1087 site-2 protease. Metallo peptidase. MEROPS family M50B low > 40

Not shown: 0 genomes with orthologs for QEN71_RS03230 only; 18 genomes with orthologs for QEN71_RS06455 only