Conservation of cofitness between Psyr_3856 and Psyr_5065 in Pseudomonas syringae pv. syringae B728a

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3856 Helicase c2 1.0 Psyr_5065 ATP-dependent DNA helicase UvrD 0.55 9
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3856 Helicase c2 1.00 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.88 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.48 9
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_05425 ATP-dependent DNA helicase DinG 0.88 AO356_11990 DNA helicase II 0.71 6
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_17020 ATP-dependent DNA helicase DinG 0.89 AO353_10055 DNA helicase II 0.54 7
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.89 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.30 41
Pseudomonas fluorescens SBW25 0.93 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.89 PFLU_RS29900 DNA helicase II 0.39 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.89 PFLU_RS29900 DNA helicase II 0.23 19
Pseudomonas sp. RS175 0.93 PFR28_00520 ATP-dependent DNA helicase DinG 0.88 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 0.87 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA — —
Pseudomonas sp. S08-1 0.89 OH686_04830 ATP-dependent helicase DinG/Rad3 0.82 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas putida KT2440 0.88 PP_1125 putative Helicase 0.86 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.25 23
Pseudomonas stutzeri RCH2 0.88 Psest_2857 Rad3-related DNA helicases 0.78 Psest_4098 Superfamily I DNA and RNA helicases 0.20 28
Marinobacter adhaerens HP15 0.45 HP15_1856 helicase c2 0.61 HP15_3403 UvrD/REP helicase 0.74 3
Shewanella sp. ANA-3 0.34 Shewana3_2630 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.60 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Shewanella oneidensis MR-1 0.34 SO1819 dinG ATP-dependent helicase DinG (NCBI ptt file) 0.60 SO0467 uvrD DNA helicase II (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.33 Shew_2483 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.59 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.60 12
Shewanella amazonensis SB2B 0.32 Sama_1249 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.59 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_09290 ATP-dependent DNA helicase DinG 0.60 CSW01_01015 DNA helicase II low > 62
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS16845 ATP-dependent DNA helicase DinG 0.53 ABZR86_RS16965 DNA helicase II 0.59 24
Rhodanobacter denitrificans MT42 0.29 LRK55_RS10710 ATP-dependent DNA helicase DinG 0.52 LRK55_RS06595 DNA helicase II — —
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS11005 ATP-dependent DNA helicase DinG 0.52 LRK54_RS06850 DNA helicase II low > 59
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_12870 dinG ATP-dependent DNA helicase DinG 0.52 OKGIIK_16775 DNA helicase low > 52
Acidovorax sp. GW101-3H11 0.27 Ac3H11_4422 ATP-dependent helicase DinG/Rad3 0.42 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF2695 ATP-dependent helicase DinG/Rad3 0.43 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.5017.1 ATP-dependent helicase DinG/Rad3 0.52 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Klebsiella michiganensis M5al 0.22 BWI76_RS08920 ATP-dependent DNA helicase DinG 0.62 BWI76_RS01220 DNA-dependent helicase II low > 92
Enterobacter asburiae PDN3 0.22 EX28DRAFT_2193 Rad3-related DNA helicases 0.62 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF697 ATP-dependent helicase DinG/Rad3 0.62 GFF241 ATP-dependent DNA helicase UvrD/PcrA low > 78
Escherichia coli Nissle 1917 0.22 ECOLIN_RS04255 ATP-dependent DNA helicase DinG 0.62 ECOLIN_RS21885 DNA helicase II — —
Escherichia fergusonii Becca 0.22 EFB2_03306 ATP-dependent DNA helicase DinG 0.62 EFB2_04824 DNA helicase II low > 86
Escherichia coli ECRC102 0.22 NIAGMN_04325 dinG ATP-dependent DNA helicase DinG 0.62 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli BW25113 0.22 b0799 dinG ATP-dependent DNA helicase (NCBI) 0.62 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.28 5
Escherichia coli BL21 0.22 ECD_00766 ATP-dependent DNA helicase 0.62 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECRC100 0.22 OKFHMN_06280 dinG ATP-dependent DNA helicase DinG 0.62 OKFHMN_14410 uvrD DNA helicase II low > 80
Escherichia coli ECOR27 0.22 NOLOHH_22630 dinG ATP-dependent DNA helicase DinG 0.62 NOLOHH_06540 uvrD DNA helicase II low > 75
Escherichia coli ECRC62 0.22 BNILDI_20910 dinG ATP-dependent DNA helicase DinG 0.62 BNILDI_04995 uvrD DNA helicase II low > 75
Escherichia coli ECRC101 0.22 MCAODC_25495 dinG ATP-dependent DNA helicase DinG 0.62 MCAODC_04915 uvrD DNA helicase II 0.63 3
Escherichia coli ECRC98 0.22 JDDGAC_09915 dinG ATP-dependent DNA helicase DinG 0.62 JDDGAC_18035 uvrD DNA helicase II low > 86
Escherichia coli ECOR38 0.22 HEPCGN_01765 dinG ATP-dependent DNA helicase DinG 0.62 HEPCGN_13115 uvrD DNA helicase II low > 87
Escherichia coli ECRC99 0.22 KEDOAH_21630 dinG ATP-dependent DNA helicase DinG 0.62 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.22 OHPLBJKB_02914 putative ATP-dependent helicase DinG 0.62 OHPLBJKB_04237 DNA helicase II low > 73
Enterobacter sp. TBS_079 0.22 MPMX20_01426 ATP-dependent DNA helicase DinG 0.62 MPMX20_04463 DNA helicase II low > 85
Pectobacterium carotovorum WPP14 0.21 HER17_RS13230 ATP-dependent DNA helicase DinG 0.62 HER17_RS01360 DNA helicase II low > 75
Dickeya dadantii 3937 0.21 DDA3937_RS08765 ATP-dependent DNA helicase DinG 0.62 DDA3937_RS19880 DNA helicase II low > 74
Dickeya dianthicola ME23 0.21 DZA65_RS09155 ATP-dependent DNA helicase DinG 0.62 DZA65_RS21080 DNA helicase II low > 75
Dickeya dianthicola 67-19 0.21 HGI48_RS08850 ATP-dependent DNA helicase DinG 0.61 HGI48_RS20035 DNA helicase II low > 71
Erwinia tracheiphila SCR3 0.20 LU632_RS09400 dinG ATP-dependent DNA helicase DinG 0.61 LU632_RS24125 uvrD DNA helicase II — —
Pantoea sp. MT58 0.20 IAI47_13295 ATP-dependent DNA helicase DinG 0.61 IAI47_18390 DNA helicase II low > 76
Serratia liquefaciens MT49 0.20 IAI46_07445 ATP-dependent DNA helicase DinG 0.62 IAI46_00735 DNA helicase II low > 86
Rahnella sp. WP5 0.20 EX31_RS19020 ATP-dependent DNA helicase DinG 0.60 EX31_RS15175 DNA helicase II low > 89
Kangiella aquimarina DSM 16071 0.15 B158DRAFT_2492 Rad3-related DNA helicases 0.60 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.51 19
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS07580 helicase 0.44 RR42_RS15090 DNA helicase 0.41 14
Alteromonas macleodii MIT1002 0.14 MIT1002_02593 putative ATP-dependent helicase DinG 0.60 MIT1002_00153 DNA helicase II low > 70
Paraburkholderia bryophila 376MFSha3.1 0.14 H281DRAFT_00533 ATP-dependent DNA helicase DinG 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Paraburkholderia sabiae LMG 24235 0.14 QEN71_RS06060 ATP-dependent DNA helicase 0.45 QEN71_RS05110 3'-5' exonuclease — —
Variovorax sp. OAS795 0.13 ABID97_RS14180 ATP-dependent DNA helicase 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Ralstonia solanacearum GMI1000 0.09 RS_RS08195 ATP-dependent DNA helicase 0.44 RS_RS11220 DNA-dependent helicase low > 80
Paraburkholderia graminis OAS925 0.09 ABIE53_002724 ATP-dependent DNA helicase DinG 0.43 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Ralstonia solanacearum PSI07 0.09 RPSI07_RS15960 ATP-dependent DNA helicase 0.44 RPSI07_RS13455 DNA-dependent helicase — —
Herbaspirillum seropedicae SmR1 0.09 HSERO_RS14855 helicase 0.44 HSERO_RS02160 DNA-dependent helicase low > 78
Caulobacter crescentus NA1000 0.05 CCNA_02118 ATP-dependent helicase, dinG family 0.35 CCNA_01596 DNA helicase II low > 66
Caulobacter crescentus NA1000 Δfur 0.05 CCNA_02118 ATP-dependent helicase, dinG family 0.35 CCNA_01596 DNA helicase II low > 67

Not shown: 1 genomes with orthologs for Psyr_3856 only; 33 genomes with orthologs for Psyr_5065 only